RchiOBHm_Chr6g0286201

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011288
Physical Location & Seq
Reverse (-)
49517378 .. 49521146
3769 bp
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UTR
Exon/CDS
Intron
PRQ25672

Sequence Viewer

Length: 282 bp
ATGATTGGACCGCCGGCGCCGGGGAGGTCCAATAGAGACGATTGGGATTCCGATGCGGAAGAGGAGAACAAGTACCGGATTCCGGTGAGCAATGAGATTGTGCTGAAGGGACACACCAAGGTGGTTTCGGCCCTCGCCATTGATCACACTGGTTCTAGAGTTATATCTGGTAGCTATGACCATTCTGTGAGAATGTACGATTTTCAAGGAATGAATGCAAAGTTGCAATCTTTCCGGCAGCTGGAGCCGTCTGAAGGTCATCAAGTGAGGACTATAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

93

Amino Acids

10.41

Weight (kDa)

6.04

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 31 - 69 2.7e-07 WDR3 first beta-propeller domain
WD40 PF00400 34 - 67 1.1e-07 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 34 - 70 2.8e-06 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AciI CCGC 2 cut(s) 11, 56
AcuI CTGAAG 2 cut(s) 125, 273
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 2 cut(s) 74, 197
AfiI CCNNNNNNNGG 4 cut(s) 20, 82, 241, 254
AgsI TTSAA 1 cut(s) 206
AleI CACNNNNGTG 1 cut(s) 119
AluBI AGCT 3 cut(s) 174, 241, 279
AluI AGCT 3 cut(s) 174, 241, 279
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 3 cut(s) 8, 27, 130
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 2 cut(s) 8, 27
BanI GGYRCC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 232
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 20
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 2 cut(s) 8, 27
BmgT120I GGNCC 3 cut(s) 8, 27, 130
BmiI GGNNCC 2 cut(s) 18, 246
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 20, 117
BsaWI WCCGGW 2 cut(s) 75, 82
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 82, 241, 254
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 20, 117
BseLI CCNNNNNNNGG 4 cut(s) 20, 82, 241, 254
BseMI GCAATG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 16
BsiSI CCGG 5 cut(s) 14, 20, 76, 83, 235
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 4 cut(s) 20, 82, 241, 254
BsmAI GTCTC 1 cut(s) 30
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 2 cut(s) 11, 56
BspANI GGCC 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 18, 246
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 20, 117
BssMI GATC 1 cut(s) 142
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 3 cut(s) 8, 27, 130
Csp6I GTAC 2 cut(s) 73, 196
CviJI RGCY 5 cut(s) 131, 174, 241, 247, 279
CviKI_1 RGCY 5 cut(s) 131, 174, 241, 247, 279
CviQI GTAC 2 cut(s) 73, 196
DinI GGCGCC 1 cut(s) 18
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 8, 27
Eco57I CTGAAG 2 cut(s) 125, 273
EcoT14I CCWWGG 1 cut(s) 117
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 30
FaiI YATR 3 cut(s) 164, 177, 275
FaqI GGGAC 1 cut(s) 123
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 239
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 1 cut(s) 131
HapII CCGG 5 cut(s) 14, 20, 76, 83, 235
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 2 cut(s) 47, 79
HpaII CCGG 5 cut(s) 14, 20, 76, 83, 235
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 52, 253
Hpy188III TCNNGA 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 100, 248
HpyCH4V TGCA 2 cut(s) 218, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
Hsp92I GRCGYC 1 cut(s) 17
HspAI GCGC 1 cut(s) 17
KasI GGCGCC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 8 cut(s) 27, 33, 89, 96, 135, 153, 227, 248
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 156
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 71
Mly113I GGCGCC 1 cut(s) 17
MnlI CCTC 4 cut(s) 18, 55, 143, 261
MreI CGCCGGCG 1 cut(s) 13
MroNI GCCGGC 1 cut(s) 13
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 5 cut(s) 14, 20, 76, 83, 235
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 244
NaeI GCCGGC 1 cut(s) 15
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 13
NlaIV GGNNCC 2 cut(s) 18, 246
OliI CACNNNNGTG 1 cut(s) 119
PctI GAATGC 1 cut(s) 220
PdiI GCCGGC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 47, 79
PkrI GCNGC 1 cut(s) 240
PluTI GGCGCC 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 18, 246
PspPI GGNCC 3 cut(s) 8, 27, 130
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 2 cut(s) 74, 197
RsaNI GTAC 2 cut(s) 73, 196
RseI CAYNNNNRTG 1 cut(s) 119
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 3 cut(s) 8, 27, 130
ScrFI CCNGG 1 cut(s) 21
SetI ASST 6 cut(s) 29, 123, 176, 243, 259, 281
SfaNI GCATC 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 18
SgrAI CRCCGGYG 1 cut(s) 13
SinI GGWCC 2 cut(s) 8, 27
SmiMI CAYNNNNRTG 1 cut(s) 119
SsiI CCGC 2 cut(s) 11, 56
SspDI GGCGCC 1 cut(s) 16
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 117
TfiI GAWTC 2 cut(s) 47, 79
TscAI CASTG 1 cut(s) 154
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 2 cut(s) 8, 27
XbaI TCTAGA 1 cut(s) 155
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.