RLG00000012583

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011288
Physical Location & Seq
Forward (+)
20219797 .. 20223121
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012583

Sequence Viewer

Length: 1791 bp
ATGGCGGACGACGCGGCGGAGATCTACGACGGAGTCAGAGCCGAATTTCCTCTCACATTCGGTAAGCAATCCAAATCTCAAACCCCTCTCGAAGCCATCCACAATACGACTCGTCGTAACCAGAACCTTCAACAACAGCAACGACAACCACCGCCACCCTCCTCCGCCGACCTCCCTTCTCTCTCCTCCTCCTCCAAAACCTGGCTCAATTCCCTCCGTACCGCCAAAACCCCCAACGCTAACCCTAACCCTAGCGATTCTGACGCAACCCTTATCGGACCGCCTCGTCCACCGCAGCCTAATTGGGCCTCCGACGACGATGGCGATGCCCTTATCGGACCTCCGCCACCGCCGCCGTCCGGGAGTGGCGAGAGCGACGACGATGGTGAGATGATTGGACCGCCGCCGCCGGCGAGGTCCAATAGAGACGATTGGGATTCCGATGCGGAAGAGGAGAACAAGTACCGGATTCCGGTGAGCAATGAGATTGTGCTGAAGGGACACACCAAGGTGGTTTCGGCCCTGGCCATTGATCACACTGGGTCTAGAGTTATATCTGGTAGCTATGACTACTCTGTGAGAATGTACGATTTTCAAGGAATGAATGCAAAGTTGCAATCTTTCCGGCAGCTGGAGCCGTCTGAAGGTCATCAAGTGAGAACTATAAGCTGGAGCCCCACCGCCGACCGGTTTCTGTGTGTCACCGGCTCAGCTCAGGCAAAGATTTATGATCGTGACGGACTTACACTAGGAGAGTTTGTCAAAGGGGACATGTATATTCGTGATCTTAAGAATACCAAGGGGCATATTACTGGATTGACCTGTGGACAGTGGCACCCTAGAAAGAAGGACGAAATCTTGACATCGTCGGAGGATGGGTCACTGCGCATTTGGGATGTCAATAACTTCAATACTCAGAAACAGGTAATCAAGCCAAAACTTGCTAGGCCTGGAAGAGTTCCAGTCACCACTTGTACTTGGGATCATGAAGGACAACGGATTGCAGGTGGTATAGGAGATGGTTCTATGCAGGTTTGGAACATTAAGCCCGGATGGGGAAGTAGGCCGGACATACACGTTCAGGAAGCTCATTCAGATGATATTACTGGGCTTAAGTTTTCTAGGGATGGGAGAATCTTACTCTCAAGAAGCTGTGATGGCACTTTGAAGGTTTGGGACTTACGTCAGATGAAAGATCCTCTCAAGGTGTTTCAGGATCTCCCAAATAACTATGCACAAACCAATGTCGCATTTAGTCCTGATGAGAAACTCTTTCTGACTGGAACCTCAATTGAAAGGGAGAGCACAACTGGAGGTTTACTATGCTTCTTTGATCGAGCAAAACTGGAACTTGTTTCAAAAGTTGGGATATCCCCTACTTGTAGTGTTGTGCAATGTGCCTGGCACCCAAAACTGAATCAGATCTTTGCAACATCAGGAGATAAAAGCCAAGGCGGAACTCATGTACTATATGATCCAACTCTTAGTGAAAGAGGAGCTCTTGTCTGCGTTGCACGTGCCCCTAGGAAAAAATCTGTTGATGATTTTGTGGCAAACCCAGTCATACACAACCCTCATGCTCTACCCTTGTTTAGAGATCAACCAAGCCGTAAACGTGAGCGAGAGAAAACATTGAAGGATCCAGTTAAATCCCATAAGCCTGACCTTCCTATGACAGGACCAGGCTTTGGTGGAAGAGTTGGTGCAAGTAAAGGAAGCTTATTGACCCAGTACCTTATGAAGGTATGCTATTTGTCCAATTCAGTAGTCTTCTTTCCTTTTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

597

Amino Acids

65.7

Weight (kDa)

7.98

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 160 - 246 1.1e-06 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 162 - 239 1.8e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 164 - 244 5.1e-06 WDR5 beta-propeller domain
Beta-prop_EML PF23409 167 - 430 1.4e-08 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 168 - 243 5.1e-06 THOC3 beta-propeller domain
Beta-prop_THOC3 PF25174 217 - 308 2.3e-07 THOC3 beta-propeller domain
WD40_Gbeta PF25391 260 - 427 2.4e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 264 - 429 1.5e-21 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 267 - 430 6e-16 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 267 - 427 6.9e-09 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 271 - 430 1e-14 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 273 - 483 1.7e-13 CDC20/Fizzy WD40 domain
Beta-prop_Aladin PF25460 273 - 398 2e-08 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 279 - 423 2.6e-11 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 282 - 394 5.9e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 283 - 399 7.9e-08 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 284 - 427 6e-07 WDR36/Utp21 first beta-propeller
WDR55 PF24796 285 - 398 2.4e-06 WDR55
WDR90_beta-prop_4th PF23342 285 - 391 6.1e-06 WDR90, 4th beta-propeller
Beta-prop_TEP1_2nd PF25047 286 - 395 1.1e-10 TEP-1 second beta-propeller
Beta-prop_TEP1_2nd PF25047 287 - 398 4.9e-11 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 322 - 483 2.7e-15 THOC3 beta-propeller domain
WD40 PF00400 358 - 393 1.9e-07 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 359 - 410 5.2e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 995
AasI GACNNNNNNGTC 1 cut(s) 285
Acc16I TGCGCA 1 cut(s) 887
Acc36I ACCTGC 2 cut(s) 995, 1021
AccB1I GGYRCC 2 cut(s) 834, 1404
AccB7I CCANNNNNTGG 2 cut(s) 201, 1688
AccII CGCG 1 cut(s) 14
AclWI GGATC 6 cut(s) 990, 1190, 1224, 1469, 1634, 1647
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 2 cut(s) 515, 663
AcvI CACGTG 1 cut(s) 1517
AfaI GTAC 6 cut(s) 220, 464, 587, 976, 1467, 1733
AflII CTTAAG 2 cut(s) 788, 1112
AflIII ACRYGT 2 cut(s) 771, 1075
AgeI ACCGGT 1 cut(s) 687
AgsI TTSAA 7 cut(s) 131, 596, 910, 1168, 1295, 1359, 1636
AjnI CCWGG 5 cut(s) 200, 522, 949, 1400, 1681
AleI CACNNNNGTG 1 cut(s) 509
AluBI AGCT 8 cut(s) 564, 631, 669, 713, 1088, 1152, 1499, 1719
AluI AGCT 8 cut(s) 564, 631, 669, 713, 1088, 1152, 1499, 1719
Alw21I GWGCWC 2 cut(s) 1307, 1501
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 6 cut(s) 990, 1190, 1224, 1469, 1634, 1647
AoxI GGCC 5 cut(s) 306, 519, 525, 947, 1064
ApeKI GCWGC 2 cut(s) 295, 628
ApoI RAATTY 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 687
AspA2I CCTAGG 1 cut(s) 1523
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 7 cut(s) 278, 306, 338, 398, 417, 520, 1679
AsuC2I CCSGG 2 cut(s) 361, 1050
AsuHPI GGTGA 4 cut(s) 398, 487, 694, 958
AvaII GGWCC 5 cut(s) 278, 338, 398, 417, 1679
AvrII CCTAGG 1 cut(s) 1523
BaeGI GKGCMC 1 cut(s) 1522
BalI TGGCCA 1 cut(s) 527
BamHI GGATCC 1 cut(s) 1639
BanI GGYRCC 2 cut(s) 834, 1404
BanII GRGCYC 2 cut(s) 677, 1501
BbrPI CACGTG 1 cut(s) 1517
BbsI GAAGAC 1 cut(s) 1762
Bbv12I GWGCWC 2 cut(s) 1307, 1501
BbvI GCAGC 2 cut(s) 307, 640
BccI CCATC 8 cut(s) 104, 314, 377, 869, 1013, 1047, 1121, 1151
BceAI ACGGC 3 cut(s) 340, 622, 1593
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 5 cut(s) 202, 524, 951, 1402, 1683
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 2 cut(s) 361, 1050
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 7 cut(s) 252, 546, 749, 840, 945, 1122, 1524
BfrI CTTAAG 2 cut(s) 788, 1112
BfuAI ACCTGC 2 cut(s) 995, 1021
BglII AGATCT 2 cut(s) 21, 1422
BisI GCNGC 6 cut(s) 15, 296, 353, 404, 407, 629
BlnI CCTAGG 1 cut(s) 1523
BlpI GCTNAGC 1 cut(s) 709
BlsI GCNGC 6 cut(s) 16, 297, 354, 405, 408, 630
Bme1390I CCNGG 7 cut(s) 202, 361, 524, 951, 1050, 1402, 1683
Bme18I GGWCC 5 cut(s) 278, 338, 398, 417, 1679
BmgT120I GGNCC 7 cut(s) 278, 306, 338, 398, 417, 520, 1679
BmiI GGNNCC 6 cut(s) 636, 674, 836, 1285, 1406, 1641
BmrFI CCNGG 7 cut(s) 202, 361, 524, 951, 1050, 1402, 1683
BmrI ACTGGG 4 cut(s) 549, 1116, 1553, 1723
BmsI GCATC 2 cut(s) 316, 433
BmuI ACTGGG 4 cut(s) 549, 1116, 1553, 1723
BoxI GACNNNNGTC 1 cut(s) 1182
BpiI GAAGAC 1 cut(s) 1762
BpmI CTGGAG 3 cut(s) 653, 691, 1332
Bpu10I CCTNAGC 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 709
BpuEI CTTGAG 2 cut(s) 1129, 1187
BpuMI CCSGG 2 cut(s) 361, 1050
BsaAI YACGTR 1 cut(s) 1517
BsaJI CCNNGG 5 cut(s) 507, 522, 798, 1450, 1523
BsaWI WCCGGW 3 cut(s) 465, 472, 687
BsaXI ACNNNNNCTCC 8 cut(s) 446, 476, 744, 774, 863, 893, 1488, 1518
Bse118I RCCGGY 3 cut(s) 409, 687, 704
Bse3DI GCAATG 2 cut(s) 487, 1400
BseBI CCWGG 5 cut(s) 202, 524, 951, 1402, 1683
BseDI CCNNGG 5 cut(s) 507, 522, 798, 1450, 1523
BseGI GGATG 5 cut(s) 96, 880, 901, 1058, 1132
BseMI GCAATG 2 cut(s) 487, 1400
BseMII CTCAG 3 cut(s) 723, 728, 929
BseRI GAGGAG 6 cut(s) 151, 175, 178, 181, 467, 1509
BseSI GKGCMC 1 cut(s) 1522
BseXI GCAGC 2 cut(s) 307, 640
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 688
BshFI GGCC 5 cut(s) 308, 521, 527, 949, 1066
BshNI GGYRCC 2 cut(s) 834, 1404
BshTI ACCGGT 1 cut(s) 687
BsiEI CGRYCG 1 cut(s) 688
BsiHKAI GWGCWC 2 cut(s) 1307, 1501
BsiSI CCGG 9 cut(s) 360, 410, 466, 473, 625, 688, 705, 1050, 1067
BslFI GGGAC 3 cut(s) 513, 782, 1190
BsmAI GTCTC 1 cut(s) 420
BsmBI CGTCTC 1 cut(s) 420
BsmFI GGGAC 3 cut(s) 513, 782, 1190
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 5 cut(s) 308, 521, 527, 949, 1066
Bsp1286I GDGCHC 4 cut(s) 677, 1307, 1501, 1522
Bsp1720I GCTNAGC 1 cut(s) 709
BspANI GGCC 5 cut(s) 308, 521, 527, 949, 1066
BspCNI CTCAG 3 cut(s) 722, 727, 928
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 985
BspLI GGNNCC 6 cut(s) 636, 674, 836, 1285, 1406, 1641
BspMI ACCTGC 2 cut(s) 995, 1021
BspPI GGATC 6 cut(s) 990, 1190, 1224, 1469, 1634, 1647
BspT107I GGYRCC 2 cut(s) 834, 1404
BspTI CTTAAG 2 cut(s) 788, 1112
BsrDI GCAATG 2 cut(s) 487, 1400
BsrFI RCCGGY 3 cut(s) 409, 687, 704
BssAI RCCGGY 3 cut(s) 409, 687, 704
BssECI CCNNGG 5 cut(s) 507, 522, 798, 1450, 1523
BssT1I CCWWGG 4 cut(s) 507, 798, 1450, 1523
Bst2UI CCWGG 5 cut(s) 202, 524, 951, 1402, 1683
Bst4CI ACNGT 1 cut(s) 831
Bst6I CTCTTC 3 cut(s) 444, 949, 1690
BstAFI CTTAAG 2 cut(s) 788, 1112
BstBAI YACGTR 1 cut(s) 1517
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 4 cut(s) 709, 714, 915, 1484
BstENI CCTNNNNNAGG 2 cut(s) 1674, 1739
BstF5I GGATG 5 cut(s) 96, 880, 901, 1058, 1132
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 888
BstMAI GTCTC 1 cut(s) 420
BstMCI CGRYCG 1 cut(s) 688
BstMWI GCNNNNNNNGC 4 cut(s) 11, 352, 634, 1158
BstNI CCWGG 5 cut(s) 202, 524, 951, 1402, 1683
BstNSI RCATGY 1 cut(s) 775
BstPAI GACNNNNGTC 1 cut(s) 1182
BstSCI CCNGG 7 cut(s) 200, 359, 522, 949, 1048, 1400, 1681
BstSLI GKGCMC 1 cut(s) 1522
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 307, 640
BstV2I GAAGAC 1 cut(s) 1762
BstX2I RGATCY 5 cut(s) 21, 1195, 1216, 1422, 1639
BstYI RGATCY 5 cut(s) 21, 1195, 1216, 1422, 1639
BsuRI GGCC 5 cut(s) 308, 521, 527, 949, 1066
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 5 cut(s) 96, 880, 901, 1058, 1132
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 3 cut(s) 537, 836, 881
BveI ACCTGC 2 cut(s) 995, 1021
Cac8I GCNNGC 1 cut(s) 411
CciI TCATGA 1 cut(s) 985
CfoI GCGC 1 cut(s) 888
Cfr10I RCCGGY 3 cut(s) 409, 687, 704
Cfr13I GGNCC 7 cut(s) 278, 306, 338, 398, 417, 520, 1679
CpoI CGGWCCG 1 cut(s) 278
CseI GACGC 2 cut(s) 20, 272
Csp6I GTAC 6 cut(s) 219, 463, 586, 975, 1466, 1732
CspAI ACCGGT 1 cut(s) 687
CspI CGGWCCG 1 cut(s) 278
CviAII CATG 4 cut(s) 772, 986, 1463, 1577
CviQI GTAC 6 cut(s) 219, 463, 586, 975, 1466, 1732
DdeI CTNAG 4 cut(s) 709, 714, 915, 1484
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 3 cut(s) 444, 949, 1690
EarI CTCTTC 3 cut(s) 444, 949, 1690
EciI GGCGGA 5 cut(s) 20, 32, 154, 333, 1470
Ecl136II GAGCTC 1 cut(s) 1499
Eco130I CCWWGG 4 cut(s) 507, 798, 1450, 1523
Eco147I AGGCCT 1 cut(s) 949
Eco24I GRGCYC 2 cut(s) 677, 1501
Eco32I GATATC 1 cut(s) 1371
Eco47I GGWCC 5 cut(s) 278, 338, 398, 417, 1679
Eco53kI GAGCTC 1 cut(s) 1499
Eco57I CTGAAG 2 cut(s) 515, 663
Eco72I CACGTG 1 cut(s) 1517
EcoICRI GAGCTC 1 cut(s) 1499
EcoNI CCTNNNNNAGG 2 cut(s) 1674, 1739
EcoRII CCWGG 5 cut(s) 200, 522, 949, 1400, 1681
EcoRV GATATC 1 cut(s) 1371
EcoT14I CCWWGG 4 cut(s) 507, 798, 1450, 1523
EcoT38I GRGCYC 2 cut(s) 677, 1501
ErhI CCWWGG 4 cut(s) 507, 798, 1450, 1523
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 4 cut(s) 775, 989, 1466, 1580
FaqI GGGAC 3 cut(s) 513, 782, 1190
FatI CATG 4 cut(s) 771, 985, 1462, 1576
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 6 cut(s) 15, 296, 353, 404, 407, 629
FokI GGATG 5 cut(s) 83, 887, 908, 1065, 1139
FriOI GRGCYC 2 cut(s) 677, 1501
Fsp4HI GCNGC 6 cut(s) 15, 296, 353, 404, 407, 629
FspBI CTAG 7 cut(s) 252, 546, 749, 840, 945, 1122, 1524
FspI TGCGCA 1 cut(s) 887
GlaI GCGC 1 cut(s) 887
GluI GCNGC 6 cut(s) 15, 296, 353, 404, 407, 629
GsuI CTGGAG 3 cut(s) 653, 691, 1332
HaeIII GGCC 5 cut(s) 308, 521, 527, 949, 1066
HapII CCGG 9 cut(s) 360, 410, 466, 473, 625, 688, 705, 1050, 1067
HgaI GACGC 2 cut(s) 20, 272
HhaI GCGC 1 cut(s) 888
Hin1II CATG 4 cut(s) 775, 989, 1466, 1580
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HindIII AAGCTT 1 cut(s) 1717
HinfI GANTC 7 cut(s) 33, 109, 257, 437, 469, 1134, 1417
HpaII CCGG 9 cut(s) 360, 410, 466, 473, 625, 688, 705, 1050, 1067
HphI GGTGA 4 cut(s) 398, 487, 694, 958
Hpy166II GTNNAC 4 cut(s) 290, 827, 1319, 1613
Hpy8I GTNNAC 4 cut(s) 290, 827, 1319, 1613
Hpy99I CGWCG 8 cut(s) 14, 32, 117, 317, 320, 380, 383, 871
HpyCH4III ACNGT 1 cut(s) 831
HpyCH4IV ACGT 4 cut(s) 1077, 1183, 1516, 1615
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 352, 634, 1158
HpyF3I CTNAG 4 cut(s) 709, 714, 915, 1484
HpySE526I ACGT 4 cut(s) 1077, 1183, 1516, 1615
Hsp92II CATG 4 cut(s) 775, 989, 1466, 1580
HspAI GCGC 1 cut(s) 886
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 532
LmnI GCTCC 3 cut(s) 634, 672, 1496
Lsp1109I GCAGC 2 cut(s) 307, 640
LweI GCATC 2 cut(s) 316, 433
MaeI CTAG 7 cut(s) 252, 546, 749, 840, 945, 1122, 1524
MaeII ACGT 4 cut(s) 1077, 1183, 1516, 1615
MaeIII GTNAC 5 cut(s) 116, 700, 734, 879, 964
MboII GAAGA 4 cut(s) 461, 966, 1707, 1762
MfeI CAATTG 1 cut(s) 1290
MflI RGATCY 5 cut(s) 21, 1195, 1216, 1422, 1639
MhlI GDGCHC 4 cut(s) 677, 1307, 1501, 1522
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 6 cut(s) 44, 208, 301, 1290, 1759, 1786
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 2 cut(s) 42, 103
MmeI TCCRAC 3 cut(s) 336, 849, 1502
Mox20I TGGCCA 1 cut(s) 527
MreI CGCCGGCG 1 cut(s) 409
MroNI GCCGGC 1 cut(s) 409
MscI TGGCCA 1 cut(s) 527
MseI TTAA 5 cut(s) 789, 1044, 1113, 1647, 1789
MslI CAYNNNNRTG 2 cut(s) 509, 1095
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 631
MspCI CTTAAG 2 cut(s) 788, 1112
MspI CCGG 9 cut(s) 360, 410, 466, 473, 625, 688, 705, 1050, 1067
MspR9I CCNGG 7 cut(s) 202, 361, 524, 951, 1050, 1402, 1683
MunI CAATTG 1 cut(s) 1290
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 5 cut(s) 202, 524, 951, 1402, 1683
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 11, 352, 634, 1158
NaeI GCCGGC 1 cut(s) 411
NciI CCSGG 2 cut(s) 361, 1050
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 4 cut(s) 775, 989, 1466, 1580
NlaIV GGNNCC 6 cut(s) 636, 674, 836, 1285, 1406, 1641
NmuCI GTSAC 4 cut(s) 700, 734, 879, 964
NsbI TGCGCA 1 cut(s) 887
NspI RCATGY 1 cut(s) 775
OliI CACNNNNGTG 1 cut(s) 509
PagI TCATGA 1 cut(s) 985
PaqCI CACCTGC 1 cut(s) 995
PceI AGGCCT 1 cut(s) 949
PciI ACATGT 1 cut(s) 771
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 411
PfeI GAWTC 5 cut(s) 257, 437, 469, 1134, 1417
PflFI GACNNNGTC 2 cut(s) 32, 865
PflMI CCANNNNNTGG 2 cut(s) 201, 1688
PfoI TCCNGGA 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 687
PkrI GCNGC 6 cut(s) 16, 297, 354, 405, 408, 630
PleI GAGTC 2 cut(s) 41, 103
PmaCI CACGTG 1 cut(s) 1517
PmlI CACGTG 1 cut(s) 1517
PpsI GAGTC 2 cut(s) 41, 103
Ppu21I YACGTR 1 cut(s) 1517
PscI ACATGT 1 cut(s) 771
PshAI GACNNNNGTC 1 cut(s) 1182
Psp124BI GAGCTC 1 cut(s) 1501
Psp6I CCWGG 5 cut(s) 200, 522, 949, 1400, 1681
PspCI CACGTG 1 cut(s) 1517
PspGI CCWGG 5 cut(s) 200, 522, 949, 1400, 1681
PspN4I GGNNCC 6 cut(s) 636, 674, 836, 1285, 1406, 1641
PspPI GGNCC 7 cut(s) 278, 306, 338, 398, 417, 520, 1679
PsuI RGATCY 5 cut(s) 21, 1195, 1216, 1422, 1639
PsyI GACNNNGTC 2 cut(s) 32, 865
PvuII CAGCTG 1 cut(s) 631
RsaI GTAC 6 cut(s) 220, 464, 587, 976, 1467, 1733
RsaNI GTAC 6 cut(s) 219, 463, 586, 975, 1466, 1732
RseI CAYNNNNRTG 2 cut(s) 509, 1095
Rsr2I CGGWCCG 1 cut(s) 278
RsrII CGGWCCG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 1501
SaqAI TTAA 5 cut(s) 789, 1044, 1113, 1647, 1789
SatI GCNGC 6 cut(s) 15, 296, 353, 404, 407, 629
Sau96I GGNCC 7 cut(s) 278, 306, 338, 398, 417, 520, 1679
SchI GAGTC 2 cut(s) 42, 103
ScrFI CCNGG 7 cut(s) 202, 361, 524, 951, 1050, 1402, 1683
SduI GDGCHC 4 cut(s) 677, 1307, 1501, 1522
SfaNI GCATC 2 cut(s) 316, 433
SgrAI CRCCGGYG 1 cut(s) 409
SinI GGWCC 5 cut(s) 278, 338, 398, 417, 1679
SmiMI CAYNNNNRTG 2 cut(s) 509, 1095
SmlI CTYRAG 4 cut(s) 788, 1112, 1144, 1202
SmoI CTYRAG 4 cut(s) 788, 1112, 1144, 1202
Sse9I AATT 6 cut(s) 44, 208, 301, 1290, 1759, 1786
SseBI AGGCCT 1 cut(s) 949
SspMI CTAG 7 cut(s) 252, 546, 749, 840, 945, 1122, 1524
SstI GAGCTC 1 cut(s) 1501
StuI AGGCCT 1 cut(s) 949
StyD4I CCNGG 7 cut(s) 200, 359, 522, 949, 1048, 1400, 1681
StyI CCWWGG 4 cut(s) 507, 798, 1450, 1523
TaaI ACNGT 1 cut(s) 831
TaiI ACGT 4 cut(s) 1080, 1186, 1519, 1618
TaqI TCGA 2 cut(s) 90, 1336
TasI AATT 6 cut(s) 44, 208, 301, 1290, 1759, 1786
TatI WGTACW 2 cut(s) 974, 1465
TauI GCSGC 4 cut(s) 17, 355, 406, 409
TfiI GAWTC 5 cut(s) 257, 437, 469, 1134, 1417
Tru1I TTAA 5 cut(s) 789, 1044, 1113, 1647, 1789
Tru9I TTAA 5 cut(s) 789, 1044, 1113, 1647, 1789
TscAI CASTG 3 cut(s) 544, 836, 888
TseFI GTSAC 4 cut(s) 700, 734, 879, 964
TseI GCWGC 2 cut(s) 295, 628
Tsp45I GTSAC 4 cut(s) 700, 734, 879, 964
TspDTI ATGAA 4 cut(s) 617, 1002, 1205, 1754
TspGWI ACGGA 4 cut(s) 45, 206, 753, 1012
TspRI CASTG 3 cut(s) 544, 836, 888
Tth111I GACNNNGTC 2 cut(s) 32, 865
Van91I CCANNNNNTGG 2 cut(s) 201, 1688
Vha464I CTTAAG 2 cut(s) 788, 1112
VpaK11BI GGWCC 5 cut(s) 278, 338, 398, 417, 1679
XagI CCTNNNNNAGG 2 cut(s) 1674, 1739
XapI RAATTY 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 545
XceI RCATGY 1 cut(s) 775
XmaJI CCTAGG 1 cut(s) 1523
XspI CTAG 7 cut(s) 252, 546, 749, 840, 945, 1122, 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.