pycom05g17160

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011288
Physical Location & Seq
Reverse (-)
20395789 .. 20397246
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17160.1

Sequence Viewer

Length: 1047 bp
ATGGGTACGAAAGTACATTGGGCTTTAGAATTTGGGCTCAGTCCGAGAAACACAAAAATTGAGCTAGCCCACCAGCTATTTCTCACGGTTAATGGCGGTGGAGCCTGGACGCATAAGTCTTCGTCGGAAAACACCAGAAAAACGTCGAAGTTTCAGCCATCGACGACGAGAAGAGAAGAAGAAAAAGAAAAGTGCAGTGAAGAAATACAGAGACAAAGTCCAGTGGCGGACGACGAGGCGGAGATATACGACGTAATTAGAGCTGCGTTTCCTCTCTCATTCGGGAAGCAATCGAAGTCTCAAACCTCTCTCGAAGCCATTCATAACACGACTCGTCGTTCCGTCACCAACAAACCTCCGGAAAAACCCTCCTCCGACGCTGTCAAAACGAATGGCCTCCCTTCTCTCTCCCCCTCCTCCCAAACCTGGCGCAGCTCCCTCCGCGCCCCCAAAAACCTTAACCCTGACCCCAACTCTAACGAGAACGACGATGACGATGCCATGGTTGGACCACCCCCTCCGCCGCCGCAGTCCGATCTTGGCGACGACAATGACGACGAGCGCGATATGATTGGACCACCGAGGCCGCCGGCGGGGTCCAGTAGGGACGACTCCGATTCGGAGGCGAATTTCGAGAACAGGTTTCGGATTCCGCTGAGCAATGAGATTGTTCTCAAGGGCCACACAAAAGTTGTTTCTGCCCTGGCCGTCGATCACACTGGGTCTAGAGTTGTTTCCGGCAGCTACGACTACTCTGTGCGGATGTACGATTTCCAGGGAATGGATTCAAAGTTGCAGTCTTTCCGGCAGCTCGAGCCGTCGGAAGGCCACCAAGTTCGAACCATCAGCTGGAGCCCCACTGCGGGACGGTTTCTCTGTGTTACGGGCTCAGCTACGGCAAAGATTTATGATCGTGATGGACTTACTCTGGGGGAGTTTGTCAAAGGGGACATGTATATTCGTGATCTCAAGAACACCAAGGGCCACATTTCGGGATTGACTTGTGGAGAGTGGAATCCTAAAAGTAATCAAGCCAAAACTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

349

Amino Acids

38.43

Weight (kDa)

6.11

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 220 - 306 1.4e-07 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 221 - 299 9e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 221 - 260 3.8e-06 WDR3 first beta-propeller domain
WD40 PF00400 224 - 257 5.2e-06 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 225 - 343 6.1e-07 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 228 - 294 2.8e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
AccB7I CCANNNNNTGG 2 cut(s) 781, 849
AccII CGCG 2 cut(s) 444, 564
AccIII TCCGGA 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 2 cut(s) 29, 628
AfaI GTAC 3 cut(s) 7, 15, 767
AfiI CCNNNNNNNGG 8 cut(s) 426, 593, 781, 824, 849, 862, 863, 991
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 1 cut(s) 789
AjnI CCWGG 4 cut(s) 104, 425, 702, 774
AluBI AGCT 8 cut(s) 64, 76, 263, 435, 744, 811, 849, 893
AluI AGCT 8 cut(s) 64, 76, 263, 435, 744, 811, 849, 893
Alw26I GTCTC 2 cut(s) 205, 303
Ama87I CYCGRG 1 cut(s) 812
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 6 cut(s) 394, 584, 679, 705, 826, 982
ApeKI GCWGC 4 cut(s) 263, 432, 741, 808
ApoI RAATTY 2 cut(s) 29, 628
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
Asp700I GAANNNNTTC 2 cut(s) 318, 784
AspLEI GCGC 3 cut(s) 432, 446, 564
AspS9I GGNCC 5 cut(s) 509, 575, 597, 679, 982
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 838
AsuNHI GCTAGC 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 812
AvaII GGWCC 3 cut(s) 509, 575, 597
BaeI ACNNNNGTAYC 1 cut(s) 30
BanII GRGCYC 3 cut(s) 39, 857, 890
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 4 cut(s) 250, 444, 753, 820
BccI CCATC 3 cut(s) 166, 851, 911
BceAI ACGGC 3 cut(s) 692, 802, 912
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 4 cut(s) 106, 427, 704, 776
BcoDI GTCTC 2 cut(s) 205, 303
BfaI CTAG 3 cut(s) 65, 726, 1045
BisI GCNGC 7 cut(s) 264, 433, 524, 527, 587, 742, 809
BlpI GCTNAGC 2 cut(s) 656, 889
BlsI GCNGC 7 cut(s) 265, 434, 525, 528, 588, 743, 810
Bme1390I CCNGG 4 cut(s) 106, 427, 704, 776
Bme18I GGWCC 3 cut(s) 509, 575, 597
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 5 cut(s) 509, 575, 597, 679, 982
BmiI GGNNCC 3 cut(s) 103, 598, 854
BmrFI CCNGG 4 cut(s) 106, 427, 704, 776
BmrI ACTGGG 1 cut(s) 729
BmsI GCATC 1 cut(s) 487
BmtI GCTAGC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 729
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 871
Bpu1102I GCTNAGC 2 cut(s) 656, 889
Bpu14I TTCGAA 1 cut(s) 838
BpuEI CTTGAG 2 cut(s) 659, 953
BsaJI CCNNGG 5 cut(s) 501, 581, 702, 775, 978
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 8 cut(s) 426, 593, 781, 824, 849, 862, 863, 991
Bse118I RCCGGY 1 cut(s) 589
Bse1I ACTGG 3 cut(s) 221, 600, 724
Bse3DI GCAATG 1 cut(s) 667
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 4 cut(s) 106, 427, 704, 776
BseDI CCNNGG 5 cut(s) 501, 581, 702, 775, 978
BseGI GGATG 1 cut(s) 768
BseLI CCNNNNNNNGG 8 cut(s) 426, 593, 781, 824, 849, 862, 863, 991
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 3 cut(s) 52, 647, 903
BseNI ACTGG 3 cut(s) 221, 600, 724
BseRI GAGGAG 2 cut(s) 361, 406
BseXI GCAGC 4 cut(s) 250, 444, 753, 820
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 2 cut(s) 444, 564
BshFI GGCC 6 cut(s) 396, 586, 681, 707, 828, 984
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 4 cut(s) 359, 590, 738, 805
BslFI GGGAC 3 cut(s) 620, 879, 962
BslI CCNNNNNNNGG 8 cut(s) 426, 593, 781, 824, 849, 862, 863, 991
BsmAI GTCTC 2 cut(s) 205, 303
BsmFI GGGAC 3 cut(s) 620, 879, 962
BsnI GGCC 6 cut(s) 396, 586, 681, 707, 828, 984
BsoBI CYCGRG 1 cut(s) 812
Bsp119I TTCGAA 1 cut(s) 838
Bsp1286I GDGCHC 3 cut(s) 39, 857, 890
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 4 cut(s) 535, 712, 910, 964
Bsp1720I GCTNAGC 2 cut(s) 656, 889
Bsp19I CCATGG 1 cut(s) 501
BspANI GGCC 6 cut(s) 396, 586, 681, 707, 828, 984
BspCNI CTCAG 3 cut(s) 51, 648, 902
BspEI TCCGGA 1 cut(s) 358
BspFNI CGCG 2 cut(s) 444, 564
BspLI GGNNCC 3 cut(s) 103, 598, 854
BspOI GCTAGC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 838
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 589
BsrI ACTGG 3 cut(s) 221, 600, 724
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 5 cut(s) 501, 581, 702, 775, 978
BssMI GATC 4 cut(s) 535, 712, 910, 964
BssT1I CCWWGG 2 cut(s) 501, 978
Bst2UI CCWGG 4 cut(s) 106, 427, 704, 776
Bst4CI ACNGT 2 cut(s) 88, 870
Bst6I CTCTTC 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 838
BstC8I GCNNGC 2 cut(s) 66, 591
BstDEI CTNAG 3 cut(s) 38, 656, 889
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 768
BstFNI CGCG 2 cut(s) 444, 564
BstHHI GCGC 3 cut(s) 432, 446, 564
BstKTI GATC 4 cut(s) 538, 715, 913, 967
BstMAI GTCTC 2 cut(s) 205, 303
BstMBI GATC 4 cut(s) 535, 712, 910, 964
BstMWI GCNNNNNNNGC 2 cut(s) 441, 814
BstNI CCWGG 4 cut(s) 106, 427, 704, 776
BstNSI RCATGY 1 cut(s) 955
BstSCI CCNGG 4 cut(s) 104, 425, 702, 774
BstUI CGCG 2 cut(s) 444, 564
BstV1I GCAGC 4 cut(s) 250, 444, 753, 820
BstV2I GAAGAC 1 cut(s) 111
BsuRI GGCC 6 cut(s) 396, 586, 681, 707, 828, 984
BtgI CCRYGG 1 cut(s) 501
BtsCI GGATG 1 cut(s) 768
BtsI GCAGTG 2 cut(s) 202, 858
BtsIMutI CAGTG 4 cut(s) 202, 228, 717, 858
Cac8I GCNNGC 2 cut(s) 66, 591
CfoI GCGC 3 cut(s) 432, 446, 564
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 5 cut(s) 509, 575, 597, 679, 982
CseI GACGC 2 cut(s) 118, 386
Csp6I GTAC 3 cut(s) 6, 14, 766
CviAII CATG 2 cut(s) 502, 952
CviQI GTAC 3 cut(s) 6, 14, 766
DdeI CTNAG 3 cut(s) 38, 656, 889
DpnI GATC 4 cut(s) 537, 714, 912, 966
DpnII GATC 4 cut(s) 535, 712, 910, 964
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
EciI GGCGGA 3 cut(s) 242, 254, 510
Eco130I CCWWGG 2 cut(s) 501, 978
Eco24I GRGCYC 3 cut(s) 39, 857, 890
Eco47I GGWCC 3 cut(s) 509, 575, 597
Eco88I CYCGRG 1 cut(s) 812
EcoRII CCWGG 4 cut(s) 104, 425, 702, 774
EcoT14I CCWWGG 2 cut(s) 501, 978
EcoT38I GRGCYC 3 cut(s) 39, 857, 890
ErhI CCWWGG 2 cut(s) 501, 978
FaeI CATG 2 cut(s) 505, 955
FaiI YATR 8 cut(s) 114, 247, 324, 503, 569, 909, 953, 957
FaqI GGGAC 3 cut(s) 620, 879, 962
FatI CATG 2 cut(s) 501, 951
FauI CCCGC 2 cut(s) 586, 856
Fnu4HI GCNGC 7 cut(s) 264, 433, 524, 527, 587, 742, 809
FokI GGATG 1 cut(s) 775
FriOI GRGCYC 3 cut(s) 39, 857, 890
Fsp4HI GCNGC 7 cut(s) 264, 433, 524, 527, 587, 742, 809
FspBI CTAG 3 cut(s) 65, 726, 1045
GlaI GCGC 3 cut(s) 431, 445, 563
GluI GCNGC 7 cut(s) 264, 433, 524, 527, 587, 742, 809
GsuI CTGGAG 1 cut(s) 871
HaeIII GGCC 6 cut(s) 396, 586, 681, 707, 828, 984
HapII CCGG 4 cut(s) 359, 590, 738, 805
HgaI GACGC 2 cut(s) 118, 386
HhaI GCGC 3 cut(s) 432, 446, 564
Hin1II CATG 2 cut(s) 505, 955
Hin6I GCGC 3 cut(s) 430, 444, 562
HinP1I GCGC 3 cut(s) 430, 444, 562
HinfI GANTC 6 cut(s) 331, 611, 617, 649, 785, 1015
HpaII CCGG 4 cut(s) 359, 590, 738, 805
HphI GGTGA 1 cut(s) 337
Hpy188I TCNGA 8 cut(s) 45, 127, 376, 535, 616, 622, 648, 823
Hpy188III TCNNGA 9 cut(s) 283, 311, 359, 634, 726, 914, 962, 970, 993
HpyAV CCTTC 2 cut(s) 411, 818
HpyCH4III ACNGT 2 cut(s) 88, 870
HpyCH4IV ACGT 2 cut(s) 143, 252
HpyCH4V TGCA 2 cut(s) 195, 796
HpyF10VI GCNNNNNNNGC 2 cut(s) 441, 814
HpyF3I CTNAG 3 cut(s) 38, 656, 889
HpySE526I ACGT 2 cut(s) 143, 252
Hsp92II CATG 2 cut(s) 505, 955
HspAI GCGC 3 cut(s) 430, 444, 562
Kpn2I TCCGGA 1 cut(s) 358
KroI GCCGGC 1 cut(s) 589
KroNI GCCGGC 1 cut(s) 591
Kzo9I GATC 4 cut(s) 535, 712, 910, 964
LmnI GCTCC 3 cut(s) 101, 440, 852
Lsp1109I GCAGC 4 cut(s) 250, 444, 753, 820
LweI GCATC 1 cut(s) 487
MaeI CTAG 3 cut(s) 65, 726, 1045
MaeII ACGT 2 cut(s) 143, 252
MaeIII GTNAC 2 cut(s) 343, 880
MalI GATC 4 cut(s) 537, 714, 912, 966
MboI GATC 4 cut(s) 535, 712, 910, 964
MboII GAAGA 5 cut(s) 111, 183, 188, 191, 212
MhlI GDGCHC 3 cut(s) 39, 857, 890
MluCI AATT 4 cut(s) 29, 57, 255, 628
MlyI GAGTC 2 cut(s) 325, 605
MmeI TCCRAC 4 cut(s) 105, 399, 487, 801
MreI CGCCGGCG 1 cut(s) 589
MroI TCCGGA 1 cut(s) 358
MroNI GCCGGC 1 cut(s) 589
MroXI GAANNNNTTC 2 cut(s) 318, 784
MseI TTAA 2 cut(s) 90, 459
MspA1I CMGCKG 2 cut(s) 655, 849
MspI CCGG 4 cut(s) 359, 590, 738, 805
MspR9I CCNGG 4 cut(s) 106, 427, 704, 776
MvaI CCWGG 4 cut(s) 106, 427, 704, 776
MvnI CGCG 2 cut(s) 444, 564
MwoI GCNNNNNNNGC 2 cut(s) 441, 814
NaeI GCCGGC 1 cut(s) 591
NcoI CCATGG 1 cut(s) 501
NdeII GATC 4 cut(s) 535, 712, 910, 964
NgoMIV GCCGGC 1 cut(s) 589
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 2 cut(s) 505, 955
NlaIV GGNNCC 3 cut(s) 103, 598, 854
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 955
NspV TTCGAA 1 cut(s) 838
PaeR7I CTCGAG 1 cut(s) 812
PciI ACATGT 1 cut(s) 951
PcsI WCGNNNNNNNCGW 4 cut(s) 486, 492, 552, 561
PdiI GCCGGC 1 cut(s) 591
PdmI GAANNNNTTC 2 cut(s) 318, 784
PfeI GAWTC 4 cut(s) 617, 649, 785, 1015
PflFI GACNNNGTC 2 cut(s) 216, 380
PflMI CCANNNNNTGG 2 cut(s) 781, 849
PkrI GCNGC 7 cut(s) 265, 434, 525, 528, 588, 743, 810
PleI GAGTC 2 cut(s) 325, 605
PpsI GAGTC 2 cut(s) 325, 605
PscI ACATGT 1 cut(s) 951
Psp6I CCWGG 4 cut(s) 104, 425, 702, 774
PspGI CCWGG 4 cut(s) 104, 425, 702, 774
PspN4I GGNNCC 3 cut(s) 103, 598, 854
PspPI GGNCC 5 cut(s) 509, 575, 597, 679, 982
PspXI VCTCGAGB 1 cut(s) 812
PsyI GACNNNGTC 2 cut(s) 216, 380
PvuII CAGCTG 1 cut(s) 849
RsaI GTAC 3 cut(s) 7, 15, 767
RsaNI GTAC 3 cut(s) 6, 14, 766
SaqAI TTAA 2 cut(s) 90, 459
SatI GCNGC 7 cut(s) 264, 433, 524, 527, 587, 742, 809
Sau3AI GATC 4 cut(s) 535, 712, 910, 964
Sau96I GGNCC 5 cut(s) 509, 575, 597, 679, 982
SchI GAGTC 2 cut(s) 325, 605
ScrFI CCNGG 4 cut(s) 106, 427, 704, 776
SduI GDGCHC 3 cut(s) 39, 857, 890
SfaNI GCATC 1 cut(s) 487
Sfr274I CTCGAG 1 cut(s) 812
SfuI TTCGAA 1 cut(s) 838
SgrAI CRCCGGYG 1 cut(s) 589
SinI GGWCC 3 cut(s) 509, 575, 597
SlaI CTCGAG 1 cut(s) 812
SmlI CTYRAG 3 cut(s) 674, 812, 968
SmoI CTYRAG 3 cut(s) 674, 812, 968
Sse9I AATT 4 cut(s) 29, 57, 255, 628
SspMI CTAG 3 cut(s) 65, 726, 1045
StyD4I CCNGG 4 cut(s) 104, 425, 702, 774
StyI CCWWGG 2 cut(s) 501, 978
TaaI ACNGT 2 cut(s) 88, 870
TaiI ACGT 2 cut(s) 146, 255
TaqI TCGA 8 cut(s) 146, 161, 293, 312, 633, 711, 813, 838
TasI AATT 4 cut(s) 29, 57, 255, 628
TatI WGTACW 1 cut(s) 13
TauI GCSGC 3 cut(s) 526, 529, 589
TfiI GAWTC 4 cut(s) 617, 649, 785, 1015
Tru1I TTAA 2 cut(s) 90, 459
Tru9I TTAA 2 cut(s) 90, 459
TscAI CASTG 4 cut(s) 202, 228, 724, 865
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 4 cut(s) 263, 432, 741, 808
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 4 cut(s) 202, 228, 724, 865
Tth111I GACNNNGTC 2 cut(s) 216, 380
Van91I CCANNNNNTGG 2 cut(s) 781, 849
VpaK11BI GGWCC 3 cut(s) 509, 575, 597
XapI RAATTY 2 cut(s) 29, 628
XbaI TCTAGA 1 cut(s) 725
XceI RCATGY 1 cut(s) 955
XhoI CTCGAG 1 cut(s) 812
XmnI GAANNNNTTC 2 cut(s) 318, 784
XspI CTAG 3 cut(s) 65, 726, 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.