pycom10g15070

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011288
Physical Location & Seq
Reverse (-)
18393094 .. 18394910
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15070.5

Sequence Viewer

Length: 1170 bp
ATGGCGGACGACGAGGCAGAGATGTGCGACGGAATCAGAGCTGCTTTTCCTATCTCGTTCGGGAAGCAATCTAAGTCTCAAACCCCTCTCGAAGCCATTCACAACACGACTCGTCGTTCCGTCAGCAACAACCCTCCTGAAAAATCCTCCTCCGCCGCCTCCAAAACGAGCGACCTCCCTTCTCTCTCCTCCTCCTCCCAAACCTGGCTCAGCTCCATCCGCGCCCCCAAAAACCCTAACCCCAACCCCAACTCCAACCCTAACGAGAACGACGATGGCGATGCCATGGTTGGACCGCCCCCTCCGCCGCCACGATCCGAGCTTGGAGACGACGACGATGGTGAGTTGATTGGACCGCCGAGACCGCCGGCGGGGTCCAATAGGGACGATTCCGATTCTGATTCGGAGGCGAATTTCGTAAACAGGTTTCGAATCCCGGTGAGCAATGAGATTGTTCTCAAGGGACACACAAAAGTCGTTTCCGCCCTCGCCATCGATCACACTGGGTCTCGAGTTGTTTCAGGCAGCTACGACTACTCCGTGCGGATGTACGATTTCCAGGGAATGAATTCAAAGTTGCAGTCTTTCCGGCAGCTCGAGCCATCAGAAGGCCACCAAGTTCGAACCATCAGCTGGAGCCCGACGGCGGACCGGTTTCTCTGTGTTACTGGCTCGGCTACGGCGAAGATTTATGATCGTGATGGACTTACATTGGGGGAGTTTGTAAAAGGGGAAATGTATATTCGTGATCTCAAGAACACCAAGGGCCACATAACTGGATTGACTTGTGGAGAGTGGAATCCTAAAAGTAAAGACACGATTTTGACTTCATCTGAGGATGGATCACTGCGTATTTGGGATGTCAATGACTTCAAAACTCAGAAACAGGTAATCAAGCCAAAACTTGCTCGGCCTGGAAGAGTTCCAGTCACCACTTGTGCTTGGGATCGCGACGGAAAACGTATTGCAGGTGGTATAGGAGATGGTTCTATACAGGTATGGAACCTTAAGCCTGGATGGGGAAGCAGGCCAGATATACACGTTCAGAATAGTCATTCAGACGATATTACCGGGCTTAAATTTTCTATGGATGGGAGAATATTACTATCAAGAAGCCTTGATGGTACATTGAAGGTTTGGGATTTGCGTCAGATGAAGGATCGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

390

Amino Acids

42.62

Weight (kDa)

6.41

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 959
Acc36I ACCTGC 1 cut(s) 959
AccB7I CCANNNNNTGG 1 cut(s) 633
AccII CGCG 2 cut(s) 222, 951
AclWI GGATC 4 cut(s) 309, 850, 954, 1167
AcsI RAATTY 3 cut(s) 412, 568, 1079
AfaI GTAC 2 cut(s) 551, 1126
AfiI CCNNNNNNNGG 6 cut(s) 204, 371, 608, 633, 646, 1019
AflII CTTAAG 1 cut(s) 1007
AflIII ACRYGT 1 cut(s) 1039
AgeI ACCGGT 1 cut(s) 651
AgsI TTSAA 3 cut(s) 573, 874, 1132
AjnI CCWGG 4 cut(s) 203, 558, 913, 1012
AluBI AGCT 6 cut(s) 41, 213, 322, 528, 595, 633
AluI AGCT 6 cut(s) 41, 213, 322, 528, 595, 633
Alw26I GTCTC 4 cut(s) 81, 321, 355, 513
AlwI GGATC 4 cut(s) 309, 850, 954, 1167
Ama87I CYCGRG 2 cut(s) 510, 596
AoxI GGCC 4 cut(s) 610, 766, 911, 1028
ApeKI GCWGC 3 cut(s) 41, 525, 592
ApoI RAATTY 3 cut(s) 412, 568, 1079
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
AsiGI ACCGGT 1 cut(s) 651
Asp700I GAANNNNTTC 2 cut(s) 96, 568
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 5 cut(s) 293, 353, 375, 649, 766
AsuC2I CCSGG 2 cut(s) 437, 1072
AsuHPI GGTGA 3 cut(s) 353, 451, 922
AsuII TTCGAA 2 cut(s) 430, 622
AvaI CYCGRG 2 cut(s) 510, 596
AvaII GGWCC 4 cut(s) 293, 353, 375, 649
BanII GRGCYC 1 cut(s) 641
BbvI GCAGC 3 cut(s) 28, 537, 604
BceAI ACGGC 2 cut(s) 660, 696
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 4 cut(s) 205, 560, 915, 1014
BcnI CCSGG 2 cut(s) 437, 1072
BcoDI GTCTC 4 cut(s) 81, 321, 355, 513
BfrI CTTAAG 1 cut(s) 1007
BfuAI ACCTGC 1 cut(s) 959
BisI GCNGC 5 cut(s) 42, 156, 308, 526, 593
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 5 cut(s) 43, 157, 309, 527, 594
Bme1390I CCNGG 6 cut(s) 205, 437, 560, 915, 1014, 1072
Bme18I GGWCC 4 cut(s) 293, 353, 375, 649
BmeT110I CYCGRG 2 cut(s) 510, 596
BmgT120I GGNCC 5 cut(s) 293, 353, 375, 649, 766
BmiI GGNNCC 3 cut(s) 376, 638, 1004
BmrFI CCNGG 6 cut(s) 205, 437, 560, 915, 1014, 1072
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 655
Bpu1102I GCTNAGC 1 cut(s) 209
Bpu14I TTCGAA 2 cut(s) 430, 622
BpuEI CTTGAG 2 cut(s) 443, 737
BpuMI CCSGG 2 cut(s) 437, 1072
Bsa29I ATCGAT 1 cut(s) 495
BsaI GGTCTC 2 cut(s) 355, 513
BsaJI CCNNGG 3 cut(s) 285, 559, 762
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 521, 551
Bsc4I CCNNNNNNNGG 6 cut(s) 204, 371, 608, 633, 646, 1019
Bse118I RCCGGY 2 cut(s) 367, 651
Bse1I ACTGG 4 cut(s) 508, 673, 781, 926
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 4 cut(s) 205, 560, 915, 1014
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 285, 559, 762
BseGI GGATG 6 cut(s) 216, 552, 844, 865, 1022, 1096
BseLI CCNNNNNNNGG 6 cut(s) 204, 371, 608, 633, 646, 1019
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 3 cut(s) 223, 825, 893
BseNI ACTGG 4 cut(s) 508, 673, 781, 926
BseRI GAGGAG 4 cut(s) 139, 178, 181, 184
BseXI GCAGC 3 cut(s) 28, 537, 604
Bsh1236I CGCG 2 cut(s) 222, 951
BshFI GGCC 4 cut(s) 612, 768, 913, 1030
BshTI ACCGGT 1 cut(s) 651
BshVI ATCGAT 1 cut(s) 495
BsiHKCI CYCGRG 2 cut(s) 510, 596
BsiSI CCGG 5 cut(s) 368, 437, 589, 652, 1071
BslFI GGGAC 2 cut(s) 398, 477
BslI CCNNNNNNNGG 6 cut(s) 204, 371, 608, 633, 646, 1019
BsmAI GTCTC 4 cut(s) 81, 321, 355, 513
BsmBI CGTCTC 1 cut(s) 321
BsmFI GGGAC 2 cut(s) 398, 477
BsnI GGCC 4 cut(s) 612, 768, 913, 1030
Bso31I GGTCTC 2 cut(s) 355, 513
BsoBI CYCGRG 2 cut(s) 510, 596
Bsp119I TTCGAA 2 cut(s) 430, 622
Bsp1286I GDGCHC 1 cut(s) 641
Bsp143I GATC 7 cut(s) 314, 496, 694, 748, 842, 946, 1159
Bsp1720I GCTNAGC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 285
Bsp68I TCGCGA 1 cut(s) 951
BspANI GGCC 4 cut(s) 612, 768, 913, 1030
BspCNI CTCAG 3 cut(s) 222, 826, 892
BspDI ATCGAT 1 cut(s) 495
BspFNI CGCG 2 cut(s) 222, 951
BspLI GGNNCC 3 cut(s) 376, 638, 1004
BspMI ACCTGC 1 cut(s) 959
BspPI GGATC 4 cut(s) 309, 850, 954, 1167
BspT104I TTCGAA 2 cut(s) 430, 622
BspTI CTTAAG 1 cut(s) 1007
BspTNI GGTCTC 2 cut(s) 355, 513
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 2 cut(s) 367, 651
BsrI ACTGG 4 cut(s) 508, 673, 781, 926
BssAI RCCGGY 2 cut(s) 367, 651
BssECI CCNNGG 3 cut(s) 285, 559, 762
BssMI GATC 7 cut(s) 314, 496, 694, 748, 842, 946, 1159
BssT1I CCWWGG 2 cut(s) 285, 762
Bst2UI CCWGG 4 cut(s) 205, 560, 915, 1014
Bst6I CTCTTC 1 cut(s) 913
BstAFI CTTAAG 1 cut(s) 1007
BstBI TTCGAA 2 cut(s) 430, 622
BstC8I GCNNGC 2 cut(s) 369, 1028
BstDEI CTNAG 4 cut(s) 72, 209, 834, 879
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 6 cut(s) 216, 552, 844, 865, 1022, 1096
BstFNI CGCG 2 cut(s) 222, 951
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 7 cut(s) 317, 499, 697, 751, 845, 949, 1162
BstMAI GTCTC 4 cut(s) 81, 321, 355, 513
BstMBI GATC 7 cut(s) 314, 496, 694, 748, 842, 946, 1159
BstMWI GCNNNNNNNGC 4 cut(s) 219, 304, 364, 598
BstNI CCWGG 4 cut(s) 205, 560, 915, 1014
BstSCI CCNGG 6 cut(s) 203, 435, 558, 913, 1012, 1070
BstUI CGCG 2 cut(s) 222, 951
BstV1I GCAGC 3 cut(s) 28, 537, 604
BstXI CCANNNNNNTGG 1 cut(s) 776
Bsu15I ATCGAT 1 cut(s) 495
BsuRI GGCC 4 cut(s) 612, 768, 913, 1030
BsuTUI ATCGAT 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 6 cut(s) 216, 552, 844, 865, 1022, 1096
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 2 cut(s) 501, 845
BtuMI TCGCGA 1 cut(s) 951
BveI ACCTGC 1 cut(s) 959
Cac8I GCNNGC 2 cut(s) 369, 1028
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 2 cut(s) 367, 651
Cfr13I GGNCC 5 cut(s) 293, 353, 375, 649, 766
ClaI ATCGAT 1 cut(s) 495
CpoI CGGWCCG 1 cut(s) 649
CseI GACGC 1 cut(s) 1136
Csp6I GTAC 2 cut(s) 550, 1125
CspAI ACCGGT 1 cut(s) 651
CspI CGGWCCG 1 cut(s) 649
CviAII CATG 1 cut(s) 286
CviQI GTAC 2 cut(s) 550, 1125
DdeI CTNAG 4 cut(s) 72, 209, 834, 879
DpnI GATC 7 cut(s) 316, 498, 696, 750, 844, 948, 1161
DpnII GATC 7 cut(s) 314, 496, 694, 748, 842, 946, 1159
Eam1104I CTCTTC 1 cut(s) 913
EarI CTCTTC 1 cut(s) 913
EciI GGCGGA 5 cut(s) 20, 142, 294, 472, 662
Eco130I CCWWGG 2 cut(s) 285, 762
Eco24I GRGCYC 1 cut(s) 641
Eco31I GGTCTC 2 cut(s) 355, 513
Eco47I GGWCC 4 cut(s) 293, 353, 375, 649
Eco88I CYCGRG 2 cut(s) 510, 596
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 4 cut(s) 203, 558, 913, 1012
EcoT14I CCWWGG 2 cut(s) 285, 762
EcoT38I GRGCYC 1 cut(s) 641
ErhI CCWWGG 2 cut(s) 285, 762
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 1 cut(s) 289
FaiI YATR 9 cut(s) 287, 693, 741, 773, 977, 992, 1000, 1037, 1088
FaqI GGGAC 2 cut(s) 398, 477
FatI CATG 1 cut(s) 285
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 5 cut(s) 42, 156, 308, 526, 593
FokI GGATG 6 cut(s) 203, 559, 851, 872, 1029, 1103
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 5 cut(s) 42, 156, 308, 526, 593
GlaI GCGC 1 cut(s) 223
GluI GCNGC 5 cut(s) 42, 156, 308, 526, 593
GsuI CTGGAG 1 cut(s) 655
HaeIII GGCC 4 cut(s) 612, 768, 913, 1030
HapII CCGG 5 cut(s) 368, 437, 589, 652, 1071
HgaI GACGC 1 cut(s) 1136
HhaI GCGC 1 cut(s) 224
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 7 cut(s) 33, 109, 389, 395, 401, 432, 799
HpaII CCGG 5 cut(s) 368, 437, 589, 652, 1071
HphI GGTGA 3 cut(s) 353, 451, 922
Hpy166II GTNNAC 1 cut(s) 421
Hpy188III TCNNGA 9 cut(s) 61, 89, 137, 510, 698, 746, 754, 950, 1110
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 8 cut(s) 14, 32, 117, 275, 335, 338, 646, 956
HpyAV CCTTC 4 cut(s) 189, 602, 1126, 1150
HpyCH4IV ACGT 2 cut(s) 961, 1041
HpyCH4V TGCA 2 cut(s) 580, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 304, 364, 598
HpyF3I CTNAG 4 cut(s) 72, 209, 834, 879
HpySE526I ACGT 2 cut(s) 961, 1041
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 222
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
Kzo9I GATC 7 cut(s) 314, 496, 694, 748, 842, 946, 1159
LmnI GCTCC 2 cut(s) 218, 636
Lsp1109I GCAGC 3 cut(s) 28, 537, 604
LweI GCATC 1 cut(s) 271
MaeII ACGT 2 cut(s) 961, 1041
MaeIII GTNAC 2 cut(s) 664, 928
MalI GATC 7 cut(s) 316, 498, 696, 750, 844, 948, 1161
MboI GATC 7 cut(s) 314, 496, 694, 748, 842, 946, 1159
MboII GAAGA 2 cut(s) 697, 930
MhlI GDGCHC 1 cut(s) 641
MluCI AATT 3 cut(s) 412, 568, 1079
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 2 cut(s) 271, 279
MreI CGCCGGCG 1 cut(s) 367
MroNI GCCGGC 1 cut(s) 367
MroXI GAANNNNTTC 2 cut(s) 96, 568
MseI TTAA 3 cut(s) 1008, 1077, 1168
MspA1I CMGCKG 1 cut(s) 633
MspCI CTTAAG 1 cut(s) 1007
MspI CCGG 5 cut(s) 368, 437, 589, 652, 1071
MspR9I CCNGG 6 cut(s) 205, 437, 560, 915, 1014, 1072
MvaI CCWGG 4 cut(s) 205, 560, 915, 1014
MvnI CGCG 2 cut(s) 222, 951
MwoI GCNNNNNNNGC 4 cut(s) 219, 304, 364, 598
NaeI GCCGGC 1 cut(s) 369
NciI CCSGG 2 cut(s) 437, 1072
NcoI CCATGG 1 cut(s) 285
NdeII GATC 7 cut(s) 314, 496, 694, 748, 842, 946, 1159
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 3 cut(s) 376, 638, 1004
NmeAIII GCCGAG 3 cut(s) 384, 653, 889
NmuCI GTSAC 1 cut(s) 928
NruI TCGCGA 1 cut(s) 951
NspV TTCGAA 2 cut(s) 430, 622
PaeR7I CTCGAG 2 cut(s) 510, 596
PaqCI CACCTGC 1 cut(s) 959
PcsI WCGNNNNNNNCGW 4 cut(s) 270, 276, 537, 680
PdiI GCCGGC 1 cut(s) 369
PdmI GAANNNNTTC 2 cut(s) 96, 568
PfeI GAWTC 6 cut(s) 33, 389, 395, 401, 432, 799
PflMI CCANNNNNTGG 1 cut(s) 633
PinAI ACCGGT 1 cut(s) 651
PkrI GCNGC 5 cut(s) 43, 157, 309, 527, 594
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp6I CCWGG 4 cut(s) 203, 558, 913, 1012
PspGI CCWGG 4 cut(s) 203, 558, 913, 1012
PspN4I GGNNCC 3 cut(s) 376, 638, 1004
PspPI GGNCC 5 cut(s) 293, 353, 375, 649, 766
PspXI VCTCGAGB 1 cut(s) 596
PvuII CAGCTG 1 cut(s) 633
RruI TCGCGA 1 cut(s) 951
RsaI GTAC 2 cut(s) 551, 1126
RsaNI GTAC 2 cut(s) 550, 1125
Rsr2I CGGWCCG 1 cut(s) 649
RsrII CGGWCCG 1 cut(s) 649
SaqAI TTAA 3 cut(s) 1008, 1077, 1168
SatI GCNGC 5 cut(s) 42, 156, 308, 526, 593
Sau3AI GATC 7 cut(s) 314, 496, 694, 748, 842, 946, 1159
Sau96I GGNCC 5 cut(s) 293, 353, 375, 649, 766
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 6 cut(s) 205, 437, 560, 915, 1014, 1072
SduI GDGCHC 1 cut(s) 641
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 2 cut(s) 510, 596
SfuI TTCGAA 2 cut(s) 430, 622
SgrAI CRCCGGYG 1 cut(s) 367
SinI GGWCC 4 cut(s) 293, 353, 375, 649
SlaI CTCGAG 2 cut(s) 510, 596
SmlI CTYRAG 5 cut(s) 458, 510, 596, 752, 1007
SmoI CTYRAG 5 cut(s) 458, 510, 596, 752, 1007
Sse9I AATT 3 cut(s) 412, 568, 1079
SspI AATATT 1 cut(s) 1101
StyD4I CCNGG 6 cut(s) 203, 435, 558, 913, 1012, 1070
StyI CCWWGG 2 cut(s) 285, 762
TaiI ACGT 2 cut(s) 964, 1044
TaqI TCGA 6 cut(s) 90, 430, 495, 511, 597, 622
TasI AATT 3 cut(s) 412, 568, 1079
TauI GCSGC 2 cut(s) 158, 310
TfiI GAWTC 6 cut(s) 33, 389, 395, 401, 432, 799
Tru1I TTAA 3 cut(s) 1008, 1077, 1168
Tru9I TTAA 3 cut(s) 1008, 1077, 1168
TscAI CASTG 2 cut(s) 508, 852
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 3 cut(s) 41, 525, 592
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 3 cut(s) 581, 819, 1169
TspGWI ACGGA 4 cut(s) 45, 109, 529, 969
TspRI CASTG 2 cut(s) 508, 852
Van91I CCANNNNNTGG 1 cut(s) 633
Vha464I CTTAAG 1 cut(s) 1007
VpaK11BI GGWCC 4 cut(s) 293, 353, 375, 649
XapI RAATTY 3 cut(s) 412, 568, 1079
XhoI CTCGAG 2 cut(s) 510, 596
XmnI GAANNNNTTC 2 cut(s) 96, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.