Rh6DG286800

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011288
Physical Location & Seq
Reverse (-)
48259204 .. 48268490
9287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG286800.1

Sequence Viewer

Length: 723 bp
ATGGTATCATGTTCCTCGCCTGATTCGGCCTCCGACGACGACAGCGATGCCCTCATCGGACCGCCGCCGCCTCCCGGGAGTGCCGAGAGCGACGACGATGGTGAGATGATTGGACCGCCGGCGCCGGGGAGGTCCAATAGAGACGATTGGGATTCCGATGCGGAAGAGGAGAACAAGTACCGGATTCCGGTGAGCAATGAGATTGTGCTGAAGGGACACACCAAGGTGGTTTCGGCCCTCGCCATTGATCACACTGGTTCTAGAGTTATATCTGGTAGCTATGACCATTCTGTGAGAATGTACGATTTTCAAGGAATGAATGCAAAGTTGCAATCTTTCCGGCAGCTGGAGCCGTCTGAAGGTCATCAAAAGGACTCTAATGTCTCCGGCGACGATGCCTTCGCTCGCCTCTACTCTGCCGTCGAGTTCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGCTCTGAATGTCGTGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTTCCAAGTTGCAGAGATCGGCTGTAAAGAAGGTTAAAGGGCTTTCATCTGAAGAGTTTGCTGCTAGTAATGAGTTGGTTAGTACAAAATATTTGGTGAAAGGCAATGATACCCTAGATGGGACGCCAGTTGAGTACAACAAGATGTTGAAGCCAAGCCATGTGTCCCAATATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

240

Amino Acids

26.15

Weight (kDa)

5.23

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 66 - 104 2.1e-06 WDR3 first beta-propeller domain
WD40 PF00400 69 - 102 6.1e-07 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 69 - 217 3.1e-06 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 6 cut(s) 62, 65, 68, 116, 161, 455
AcuI CTGAAG 4 cut(s) 230, 378, 431, 615
AcyI GRCGYC 2 cut(s) 122, 668
AfaI GTAC 4 cut(s) 179, 302, 628, 680
AfiI CCNNNNNNNGG 7 cut(s) 74, 125, 187, 346, 359, 523, 663
AgsI TTSAA 4 cut(s) 311, 437, 468, 694
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 4 cut(s) 279, 346, 440, 460
AluI AGCT 4 cut(s) 279, 346, 440, 460
Alw26I GTCTC 2 cut(s) 135, 388
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 2 cut(s) 27, 234
ApeKI GCWGC 3 cut(s) 343, 440, 605
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 5 cut(s) 59, 113, 132, 235, 519
AsuC2I CCSGG 3 cut(s) 75, 76, 126
AsuHPI GGTGA 3 cut(s) 113, 202, 652
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 4 cut(s) 59, 113, 132, 519
BanI GGYRCC 1 cut(s) 121
BbvI GCAGC 3 cut(s) 355, 427, 592
BccI CCATC 2 cut(s) 92, 656
BceAI ACGGC 2 cut(s) 337, 404
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 3 cut(s) 75, 76, 126
BcoDI GTCTC 2 cut(s) 135, 388
BfaI CTAG 3 cut(s) 261, 609, 659
BfoI RGCGCY 1 cut(s) 125
BisI GCNGC 5 cut(s) 65, 68, 344, 441, 606
BlsI GCNGC 5 cut(s) 66, 69, 345, 442, 607
Bme1390I CCNGG 3 cut(s) 75, 76, 126
Bme18I GGWCC 4 cut(s) 59, 113, 132, 519
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 5 cut(s) 59, 113, 132, 235, 519
BmiI GGNNCC 2 cut(s) 123, 351
BmrFI CCNGG 3 cut(s) 75, 76, 126
BmsI GCATC 3 cut(s) 37, 148, 385
BpmI CTGGAG 1 cut(s) 368
BpuMI CCSGG 3 cut(s) 75, 76, 126
BsaHI GRCGYC 2 cut(s) 122, 668
BsaJI CCNNGG 4 cut(s) 74, 125, 222, 522
BsaWI WCCGGW 2 cut(s) 180, 187
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 7 cut(s) 74, 125, 187, 346, 359, 523, 663
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 259, 671
Bse3DI GCAATG 2 cut(s) 202, 655
BseDI CCNNGG 4 cut(s) 74, 125, 222, 522
BseLI CCNNNNNNNGG 7 cut(s) 74, 125, 187, 346, 359, 523, 663
BseMI GCAATG 2 cut(s) 202, 655
BseNI ACTGG 2 cut(s) 259, 671
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 355, 427, 592
BshFI GGCC 2 cut(s) 29, 236
BshNI GGYRCC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 8 cut(s) 75, 119, 125, 181, 188, 340, 387, 517
BslFI GGGAC 3 cut(s) 228, 679, 694
BslI CCNNNNNNNGG 7 cut(s) 74, 125, 187, 346, 359, 523, 663
BsmAI GTCTC 2 cut(s) 135, 388
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 3 cut(s) 228, 679, 694
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 2 cut(s) 29, 236
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 2 cut(s) 247, 560
BspACI CCGC 6 cut(s) 62, 65, 68, 116, 161, 455
BspANI GGCC 2 cut(s) 29, 236
BspLI GGNNCC 2 cut(s) 123, 351
BspQI GCTCTTC 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 202, 655
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 2 cut(s) 259, 671
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 4 cut(s) 74, 125, 222, 522
BssMI GATC 2 cut(s) 247, 560
BssNI GRCGYC 2 cut(s) 122, 668
BssT1I CCWWGG 2 cut(s) 222, 522
Bst6I CTCTTC 3 cut(s) 159, 450, 591
BstACI GRCGYC 2 cut(s) 122, 668
BstC8I GCNNGC 3 cut(s) 120, 406, 462
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 250, 563
BstMAI GTCTC 2 cut(s) 135, 388
BstMBI GATC 2 cut(s) 247, 560
BstMWI GCNNNNNNNGC 2 cut(s) 349, 461
BstSCI CCNGG 3 cut(s) 73, 74, 124
BstV1I GCAGC 3 cut(s) 355, 427, 592
BsuRI GGCC 2 cut(s) 29, 236
BtgZI GCGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 3 cut(s) 120, 406, 462
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 5 cut(s) 59, 113, 132, 235, 519
Cfr9I CCCGGG 1 cut(s) 74
CpoI CGGWCCG 1 cut(s) 59
CseI GACGC 1 cut(s) 676
Csp6I GTAC 4 cut(s) 178, 301, 627, 679
CspI CGGWCCG 1 cut(s) 59
CviAII CATG 2 cut(s) 9, 704
CviQI GTAC 4 cut(s) 178, 301, 627, 679
DinI GGCGCC 1 cut(s) 123
DpnI GATC 2 cut(s) 249, 562
DpnII GATC 2 cut(s) 247, 560
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 3 cut(s) 159, 450, 591
EarI CTCTTC 3 cut(s) 159, 450, 591
Eco130I CCWWGG 2 cut(s) 222, 522
Eco47I GGWCC 4 cut(s) 59, 113, 132, 519
Eco57I CTGAAG 4 cut(s) 230, 378, 431, 615
Eco88I CYCGRG 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 222, 522
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 222, 522
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 2 cut(s) 12, 707
FaiI YATR 4 cut(s) 10, 269, 282, 705
FalI AAGNNNNNCTT 4 cut(s) 429, 461, 444, 476
FaqI GGGAC 3 cut(s) 228, 679, 694
FatI CATG 2 cut(s) 8, 703
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 65, 68, 344, 441, 606
Fsp4HI GCNGC 5 cut(s) 65, 68, 344, 441, 606
FspBI CTAG 3 cut(s) 261, 609, 659
GlaI GCGC 1 cut(s) 123
GluI GCNGC 5 cut(s) 65, 68, 344, 441, 606
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 2 cut(s) 29, 236
HapII CCGG 8 cut(s) 75, 119, 125, 181, 188, 340, 387, 517
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 2 cut(s) 122, 668
Hin1II CATG 2 cut(s) 12, 707
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 5 cut(s) 23, 152, 184, 374, 511
HpaII CCGG 8 cut(s) 75, 119, 125, 181, 188, 340, 387, 517
HphI GGTGA 3 cut(s) 113, 202, 652
Hpy188I TCNGA 7 cut(s) 34, 59, 157, 358, 450, 501, 595
Hpy188III TCNNGA 2 cut(s) 261, 508
Hpy99I CGWCG 6 cut(s) 38, 41, 95, 98, 395, 425
HpyAV CCTTC 4 cut(s) 205, 353, 409, 568
HpyCH4V TGCA 4 cut(s) 323, 331, 491, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 461
Hsp92I GRCGYC 2 cut(s) 122, 668
Hsp92II CATG 2 cut(s) 12, 707
HspAI GCGC 1 cut(s) 122
KasI GGCGCC 1 cut(s) 121
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 560
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 349, 457
Lsp1109I GCAGC 3 cut(s) 355, 427, 592
LweI GCATC 3 cut(s) 37, 148, 385
MaeI CTAG 3 cut(s) 261, 609, 659
MalI GATC 2 cut(s) 249, 562
MboI GATC 2 cut(s) 247, 560
MboII GAAGA 3 cut(s) 176, 437, 608
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 9 cut(s) 25, 40, 62, 81, 123, 160, 248, 419, 535
MreI CGCCGGCG 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 118
MseI TTAA 2 cut(s) 537, 579
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 8 cut(s) 75, 119, 125, 181, 188, 340, 387, 517
MspR9I CCNGG 3 cut(s) 75, 76, 126
Mva1269I GAATGC 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 349, 461
NaeI GCCGGC 1 cut(s) 120
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 3 cut(s) 75, 76, 126
NdeII GATC 2 cut(s) 247, 560
NgoMIV GCCGGC 1 cut(s) 118
NlaIII CATG 2 cut(s) 12, 707
NlaIV GGNNCC 2 cut(s) 123, 351
NmeAIII GCCGAG 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 120
PfeI GAWTC 4 cut(s) 23, 152, 184, 511
PkrI GCNGC 5 cut(s) 66, 69, 345, 442, 607
PleI GAGTC 1 cut(s) 368
PluTI GGCGCC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 368
PspN4I GGNNCC 2 cut(s) 123, 351
PspPI GGNCC 5 cut(s) 59, 113, 132, 235, 519
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 4 cut(s) 179, 302, 628, 680
RsaNI GTAC 4 cut(s) 178, 301, 627, 679
RseI CAYNNNNRTG 1 cut(s) 224
Rsr2I CGGWCCG 1 cut(s) 59
RsrII CGGWCCG 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 537, 579
SatI GCNGC 5 cut(s) 65, 68, 344, 441, 606
Sau3AI GATC 2 cut(s) 247, 560
Sau96I GGNCC 5 cut(s) 59, 113, 132, 235, 519
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 75, 76, 126
SetI ASST 9 cut(s) 134, 228, 281, 348, 364, 442, 462, 546, 579
SfaNI GCATC 3 cut(s) 37, 148, 385
SfoI GGCGCC 1 cut(s) 123
SgrAI CRCCGGYG 1 cut(s) 118
SinI GGWCC 4 cut(s) 59, 113, 132, 519
SmaI CCCGGG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 224
SsiI CCGC 6 cut(s) 62, 65, 68, 116, 161, 455
SspDI GGCGCC 1 cut(s) 121
SspI AATATT 2 cut(s) 635, 716
SspMI CTAG 3 cut(s) 261, 609, 659
StyD4I CCNGG 3 cut(s) 73, 74, 124
StyI CCWWGG 2 cut(s) 222, 522
TaqI TCGA 3 cut(s) 423, 429, 529
TatI WGTACW 2 cut(s) 626, 678
TauI GCSGC 2 cut(s) 67, 70
TfiI GAWTC 4 cut(s) 23, 152, 184, 511
Tru1I TTAA 2 cut(s) 537, 579
Tru9I TTAA 2 cut(s) 537, 579
TscAI CASTG 1 cut(s) 259
TseI GCWGC 3 cut(s) 343, 440, 605
TspDTI ATGAA 2 cut(s) 332, 579
TspMI CCCGGG 1 cut(s) 74
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 4 cut(s) 59, 113, 132, 519
XbaI TCTAGA 1 cut(s) 260
XmaI CCCGGG 1 cut(s) 74
XspI CTAG 3 cut(s) 261, 609, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.