Rorug06G0178900

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011288
Physical Location & Seq
Reverse (-)
28228597 .. 28230031
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0178900.1

Sequence Viewer

Length: 1275 bp
ATGGCTCAAGCGTCTGAATCTTCTCAACCTGTCGAACTTCGTGATCGCCACTTCTCTCTGGAGGATGGTCTAGTTCCTACTTCCACCGCGAGGAATTGTGAAGGTAGCCCAGAGGAGGTATCTCGTGAATTTTCTGGGCACTTTGTTTCTCCCAAATTCATATCCAGGTTGCTCATTGAGAGGGGAGAGTACCCTGCAGTGCCTATATGTTTCCGTTATCCTGCGAGGACCACTGCGGGTTGGCCGGAATGGGTCAGCTTTGAGGTACAACAGGAAGTGTTTGAAGAGGCCCTTATTAGTGCTGGAGTGAAGATTTCACTGTTTATTTCTGGCTTTTTGATAGAGCTGAATAAGGCGCAGAAGAAGAAGTTGCAGATTCTGGAAAATGGTGCTCATGACTTTAAAGAAGTGTTCCGTTTTTGTAACTGGGTGAGACACTTTTGGGGCTCGACGGATGGAGGCAAGTTTAGGCATGGTGCAGGCTTTGAATCTGGCTGCCGGGTGGAGGCCATGTTTGCTTACTGGTTGAGCAGGTTCATCTTTGCGGATTTTCCCTATGAGAACGTGCAGCAACGAGTCTTCCTATTGGCCATTATGCTAGCAGCCGGTACTTGTTTCCCTCTTGCTCTTCTCTTCCTTGGTCATCTATATAGGAAGCTTGATCAGATTTCAAAGGATGACAAAGAAGGTGCGGGGCAGTATGGCATTGACTCTTTAGTATCTAGCTTCTTCCTTCAAGTGTTTGTATGGGAGAGATTCGAAGGTTCGGCTGTGGAACCTGTAACTCCTGAGTCCCTTCATCAACTTGAGGGAAGTAAAAGAGACTTCAATCTAGTAGGATTCCCGTTGTGTTATAGATGGTTCAGAAGGAAGGCCAAGAAGGGTGCATTTAGGTCTGCTGTTTTGGATGACATTAGGCAGTTCAATTTCAGACCATATTTTACTGCTCATGGCTTCCAGGCATTTCCTTTCTTTTATCCAGAGGGTAATTCATCACCGTTCTTGGAATCGGTTGAGTTGCTTCTTGCCACTAGCGCGCAGTCCATAATAGCATGTGGCGATTTCTTTGACCCTGTGATGGAGAAGTATTCCCCTCATAGAGTTAAGAGGCAGTTTGGCATCGACCAGGATGTGCCATCGCATCTATCTTACGGTGGACATCTTGGGGACTGCATCATGGGTTTCACTCGGATAGATGGTATTTCTTGTAGAGGTATGCTCTCAGATAGCTCGGGAAGAAGGACTGTGTTGGCTCCCCTACATCAACGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

424

Amino Acids

48.18

Weight (kDa)

6.65

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 140 - 382 1.1e-26 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 522
AccII CGCG 2 cut(s) 89, 1037
AciI CCGC 4 cut(s) 87, 236, 545, 692
AclI AACGTT 1 cut(s) 1267
AcoI YGGCCR 2 cut(s) 242, 588
AcsI RAATTY 2 cut(s) 128, 155
AfaI GTAC 3 cut(s) 191, 267, 610
AfiI CCNNNNNNNGG 4 cut(s) 90, 115, 505, 1078
AgsI TTSAA 6 cut(s) 284, 488, 672, 737, 829, 925
AjnI CCWGG 3 cut(s) 164, 957, 1125
AluBI AGCT 5 cut(s) 258, 346, 658, 726, 1230
AluI AGCT 5 cut(s) 258, 346, 658, 726, 1230
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 427, 816
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 1231
AoxI GGCC 5 cut(s) 242, 288, 507, 588, 873
ApeKI GCWGC 3 cut(s) 495, 568, 602
ApoI RAATTY 2 cut(s) 128, 155
AspLEI GCGC 3 cut(s) 358, 1037, 1039
AspS9I GGNCC 2 cut(s) 228, 289
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 442, 987
AsuII TTCGAA 1 cut(s) 759
AsuNHI GCTAGC 1 cut(s) 598
AvaI CYCGRG 1 cut(s) 1231
AvaII GGWCC 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 141
BalI TGGCCA 1 cut(s) 590
BanII GRGCYC 1 cut(s) 449
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 3 cut(s) 482, 580, 614
BccI CCATC 6 cut(s) 59, 449, 852, 1072, 1144, 1190
BciT130I CCWGG 3 cut(s) 166, 959, 1127
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 427, 816
BfaI CTAG 5 cut(s) 71, 599, 723, 833, 1032
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 522
BisI GCNGC 3 cut(s) 496, 569, 603
BlsI GCNGC 3 cut(s) 497, 570, 604
Bme1390I CCNGG 4 cut(s) 166, 500, 959, 1127
Bme18I GGWCC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 1231
BmgT120I GGNCC 2 cut(s) 228, 289
BmiI GGNNCC 2 cut(s) 777, 1254
BmrFI CCNGG 4 cut(s) 166, 500, 959, 1127
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 3 cut(s) 1128, 1150, 1182
BmtI GCTAGC 1 cut(s) 602
BmuI ACTGGG 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 571
BplI GAGNNNNNCTC 2 cut(s) 1203, 1235
BpmI CTGGAG 2 cut(s) 80, 324
Bpu14I TTCGAA 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 827
BpuMI CCSGG 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 115, 505, 1078
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 2 cut(s) 431, 527
BseBI CCWGG 3 cut(s) 166, 959, 1127
BseDI CCNNGG 1 cut(s) 637
BseGI GGATG 5 cut(s) 70, 460, 682, 913, 1135
BseLI CCNNNNNNNGG 4 cut(s) 90, 115, 505, 1078
BseMII CTCAG 2 cut(s) 780, 1236
BseNI ACTGG 2 cut(s) 431, 527
BsePI GCGCGC 1 cut(s) 1035
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 3 cut(s) 482, 580, 614
BsgI GTGCAG 2 cut(s) 498, 587
Bsh1236I CGCG 2 cut(s) 89, 1037
BshFI GGCC 5 cut(s) 244, 290, 509, 590, 875
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 1231
BsiSI CCGG 3 cut(s) 245, 499, 606
BslFI GGGAC 2 cut(s) 778, 1181
BslI CCNNNNNNNGG 4 cut(s) 90, 115, 505, 1078
BsmAI GTCTC 2 cut(s) 427, 816
BsmFI GGGAC 2 cut(s) 778, 1181
BsnI GGCC 5 cut(s) 244, 290, 509, 590, 875
BsoBI CYCGRG 1 cut(s) 1231
Bsp119I TTCGAA 1 cut(s) 759
Bsp1286I GDGCHC 3 cut(s) 141, 394, 449
Bsp143I GATC 2 cut(s) 43, 661
BspACI CCGC 4 cut(s) 87, 236, 545, 692
BspANI GGCC 5 cut(s) 244, 290, 509, 590, 875
BspCNI CTCAG 2 cut(s) 781, 1235
BspFNI CGCG 2 cut(s) 89, 1037
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 2 cut(s) 777, 1254
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 522
BspOI GCTAGC 1 cut(s) 602
BspQI GCTCTTC 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 759
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 2 cut(s) 431, 527
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 637
BssHII GCGCGC 1 cut(s) 1035
BssMI GATC 2 cut(s) 43, 661
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 637
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 3 cut(s) 166, 959, 1127
Bst4CI ACNGT 4 cut(s) 321, 999, 1154, 1246
Bst6I CTCTTC 3 cut(s) 279, 633, 638
BstBI TTCGAA 1 cut(s) 759
BstC8I GCNNGC 3 cut(s) 481, 600, 1037
BstDEI CTNAG 2 cut(s) 789, 1222
BstF5I GGATG 5 cut(s) 70, 460, 682, 913, 1135
BstFNI CGCG 2 cut(s) 89, 1037
BstHHI GCGC 3 cut(s) 358, 1037, 1039
BstKTI GATC 2 cut(s) 46, 664
BstMAI GTCTC 2 cut(s) 427, 816
BstMBI GATC 2 cut(s) 43, 661
BstMWI GCNNNNNNNGC 2 cut(s) 515, 1034
BstNI CCWGG 3 cut(s) 166, 959, 1127
BstNSI RCATGY 1 cut(s) 1056
BstSCI CCNGG 4 cut(s) 164, 498, 957, 1125
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 2 cut(s) 89, 1037
BstV1I GCAGC 3 cut(s) 482, 580, 614
BstV2I GAAGAC 1 cut(s) 571
BsuRI GGCC 5 cut(s) 244, 290, 509, 590, 875
BtgZI GCGATG 1 cut(s) 1122
BtsCI GGATG 5 cut(s) 70, 460, 682, 913, 1135
BtsI GCAGTG 2 cut(s) 204, 231
BtsIMutI CAGTG 3 cut(s) 204, 231, 317
BveI ACCTGC 1 cut(s) 522
Cac8I GCNNGC 3 cut(s) 481, 600, 1037
CaiI CAGNNNCTG 1 cut(s) 379
CciI TCATGA 1 cut(s) 394
CfoI GCGC 3 cut(s) 358, 1037, 1039
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 228, 289
Csp6I GTAC 3 cut(s) 190, 266, 609
CviAII CATG 6 cut(s) 395, 473, 511, 950, 1053, 1177
CviQI GTAC 3 cut(s) 190, 266, 609
DdeI CTNAG 2 cut(s) 789, 1222
DpnI GATC 2 cut(s) 45, 663
DpnII GATC 2 cut(s) 43, 661
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 242, 588
Eam1104I CTCTTC 3 cut(s) 279, 633, 638
EarI CTCTTC 3 cut(s) 279, 633, 638
Eco130I CCWWGG 1 cut(s) 637
Eco24I GRGCYC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 1231
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 3 cut(s) 164, 957, 1125
EcoT14I CCWWGG 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 6 cut(s) 398, 476, 514, 953, 1056, 1180
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 2 cut(s) 778, 1181
FatI CATG 6 cut(s) 394, 472, 510, 949, 1052, 1176
FauI CCCGC 2 cut(s) 229, 685
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 3 cut(s) 496, 569, 603
FokI GGATG 5 cut(s) 77, 467, 689, 920, 1142
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 3 cut(s) 496, 569, 603
FspBI CTAG 5 cut(s) 71, 599, 723, 833, 1032
GlaI GCGC 3 cut(s) 357, 1036, 1038
GluI GCNGC 3 cut(s) 496, 569, 603
GsuI CTGGAG 2 cut(s) 80, 324
HaeIII GGCC 5 cut(s) 244, 290, 509, 590, 875
HapII CCGG 3 cut(s) 245, 499, 606
HhaI GCGC 3 cut(s) 358, 1037, 1039
Hin1II CATG 6 cut(s) 398, 476, 514, 953, 1056, 1180
Hin6I GCGC 3 cut(s) 356, 1035, 1037
HinP1I GCGC 3 cut(s) 356, 1035, 1037
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 9 cut(s) 17, 376, 488, 576, 710, 756, 791, 840, 1007
HpaII CCGG 3 cut(s) 245, 499, 606
HphI GGTGA 2 cut(s) 442, 987
Hpy166II GTNNAC 1 cut(s) 1157
Hpy188I TCNGA 6 cut(s) 16, 666, 866, 932, 1191, 1225
Hpy188III TCNNGA 9 cut(s) 41, 59, 125, 380, 395, 788, 980, 1233, 1272
Hpy8I GTNNAC 1 cut(s) 1157
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 9 cut(s) 95, 680, 743, 755, 806, 861, 865, 874, 1233
HpyCH4III ACNGT 4 cut(s) 321, 999, 1154, 1246
HpyCH4IV ACGT 2 cut(s) 564, 1267
HpyCH4V TGCA 6 cut(s) 197, 373, 479, 568, 887, 1173
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 1034
HpyF3I CTNAG 2 cut(s) 789, 1222
HpySE526I ACGT 2 cut(s) 564, 1267
Hsp92II CATG 6 cut(s) 398, 476, 514, 953, 1056, 1180
HspAI GCGC 3 cut(s) 356, 1035, 1037
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 2 cut(s) 43, 661
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 1 cut(s) 1258
Lsp1109I GCAGC 3 cut(s) 482, 580, 614
LweI GCATC 3 cut(s) 1128, 1150, 1182
MaeI CTAG 5 cut(s) 71, 599, 723, 833, 1032
MaeII ACGT 2 cut(s) 564, 1267
MaeIII GTNAC 2 cut(s) 422, 781
MalI GATC 2 cut(s) 45, 663
MboI GATC 2 cut(s) 43, 661
MhlI GDGCHC 3 cut(s) 141, 394, 449
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 5 cut(s) 94, 128, 155, 925, 988
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 3 cut(s) 585, 704, 800
Mox20I TGGCCA 1 cut(s) 590
MscI TGGCCA 1 cut(s) 590
MseI TTAA 2 cut(s) 402, 1104
Msp20I TGGCCA 1 cut(s) 590
MspI CCGG 3 cut(s) 245, 499, 606
MspR9I CCNGG 4 cut(s) 166, 500, 959, 1127
MvaI CCWGG 3 cut(s) 166, 959, 1127
MvnI CGCG 2 cut(s) 89, 1037
MwoI GCNNNNNNNGC 2 cut(s) 515, 1034
NciI CCSGG 1 cut(s) 500
NdeII GATC 2 cut(s) 43, 661
NheI GCTAGC 1 cut(s) 598
NlaIII CATG 6 cut(s) 398, 476, 514, 953, 1056, 1180
NlaIV GGNNCC 2 cut(s) 777, 1254
NspI RCATGY 1 cut(s) 1056
NspV TTCGAA 1 cut(s) 759
PagI TCATGA 1 cut(s) 394
PauI GCGCGC 1 cut(s) 1035
PciSI GCTCTTC 1 cut(s) 633
PfeI GAWTC 6 cut(s) 17, 376, 488, 756, 840, 1007
PkrI GCNGC 3 cut(s) 497, 570, 604
PleI GAGTC 3 cut(s) 584, 704, 799
PpsI GAGTC 3 cut(s) 584, 704, 799
Psp1406I AACGTT 1 cut(s) 1267
Psp6I CCWGG 3 cut(s) 164, 957, 1125
PspGI CCWGG 3 cut(s) 164, 957, 1125
PspN4I GGNNCC 2 cut(s) 777, 1254
PspPI GGNCC 2 cut(s) 228, 289
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 379
PteI GCGCGC 1 cut(s) 1035
RsaI GTAC 3 cut(s) 191, 267, 610
RsaNI GTAC 3 cut(s) 190, 266, 609
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 2 cut(s) 402, 1104
SatI GCNGC 3 cut(s) 496, 569, 603
Sau3AI GATC 2 cut(s) 43, 661
Sau96I GGNCC 2 cut(s) 228, 289
SchI GAGTC 3 cut(s) 585, 704, 800
ScrFI CCNGG 4 cut(s) 166, 500, 959, 1127
SduI GDGCHC 3 cut(s) 141, 394, 449
SfaNI GCATC 3 cut(s) 1128, 1150, 1182
SfcI CTRYAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 759
SinI GGWCC 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 6, 806
SmoI CTYRAG 2 cut(s) 6, 806
Sse9I AATT 5 cut(s) 94, 128, 155, 925, 988
SsiI CCGC 4 cut(s) 87, 236, 545, 692
SspMI CTAG 5 cut(s) 71, 599, 723, 833, 1032
StyD4I CCNGG 4 cut(s) 164, 498, 957, 1125
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 4 cut(s) 321, 999, 1154, 1246
TaiI ACGT 2 cut(s) 567, 1270
TaqI TCGA 4 cut(s) 33, 449, 759, 1122
TasI AATT 5 cut(s) 94, 128, 155, 925, 988
TfiI GAWTC 6 cut(s) 17, 376, 488, 756, 840, 1007
Tru1I TTAA 2 cut(s) 402, 1104
Tru9I TTAA 2 cut(s) 402, 1104
TscAI CASTG 3 cut(s) 204, 238, 324
TseI GCWGC 3 cut(s) 495, 568, 602
TspDTI ATGAA 4 cut(s) 148, 526, 788, 981
TspGWI ACGGA 3 cut(s) 203, 404, 467
TspRI CASTG 3 cut(s) 204, 238, 324
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 2 cut(s) 128, 155
XceI RCATGY 1 cut(s) 1056
XspI CTAG 5 cut(s) 71, 599, 723, 833, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.