Rw6G025100

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011288
Physical Location & Seq
Reverse (-)
48304316 .. 48307730
3415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025100.1

Sequence Viewer

Length: 1908 bp
ATGGCGGACGACGCGGCGGAGATCTACGACGGAGCCAGAGCCGAATTTCCTCTCACATTCGGTAAGCAATCCAAATCTCAAACCCCTCTCGAAGCCATCCACAATACGACCCGTCGTAACCAGAACCTTCAACAACAGCAACGACAACCACCACCCTCCTCCGCCGACCTTCCTTCTCTCTCCTCCTCCTCCAAAACCTGGCTCAATTCCCTCCGTACCGCCAAAACCCCCAACCCTAACCCTAACCCTAACCCTAGCGATTCGGATGCAACCCTTATCGGACCGCCTCGTCCACCGCAGCCTAATTCGGCCTCCGACGACGACGGCGATGCCCTTATCGGACCGCCGCCGCCGTCCGGGAATGCCGAGAGCGACGACGATGGTGAGATGATTGGACCGCCGGCGCCGGGGAGGTCCAATAGAGACGATTGGGATTCCGATGCGGAAGAGGAGAACAAGTACCGGATTCCGGTGAGCAATGAGATTGTGCTGAAGGGACACACCAAGGTGGTTTCGGCCCTGGCCATTGATCACACTGGTTCTAGAGTTATATCTGGTAGCTATGACTACTCTGTGAGAATGTACGATTTTCAAGGAATGAATGCAAAGTTGCAATCTTTCCGGCAGCTGGAGCCGTCTGAAGGTCATCAAGTGAGGACTATAAGCTGGAGCCCCACCGCCGACCGGTTTCTGTGTGTCACCGGCTCAGCTCAGGCAAAGATTTATGATCGTGACGGACTTACGCTAGGAGAGTTTGTAAAAGGGGACATGTATATTCGTGATCTTAAGAATACCAAGGGGCATATTACTGGATTGACCTGTGGACAGTGGCACCCTAGAAAGAAAGACGAAATCTTGACATCATCGGAGGATGGGTCACTGCGCATTTGGGATGTTAATAACTTCAATACTCAGAAACAGGTAATCAAGCCAAAACTTGCTAGGCCTGGAAGAGTTCCAGTCACCACTTGTACTTGGGATCATGAAGGACAACGGATTGCAGGTGGTATAGGAGATGGTTCTATACAAGTTTGGAACATTAAGCCTGGATGGGGAAGTAGGCCGGACATACACGTTCAGGAAGCTCATTCAGATGATATTACTGGGCTTAAGTTTTCTAGGGATGGGAGAATCTTACTCTCAAGAAGCTGTGATGGCACTTTGAAGGTTTGGGACTTACGTCAGATGAAAGATCCTCTCAAGGTGTTTCAGGATCTCCCAAATAACTATGCACAAACCAATGTCGCATTTAGTCCTGATGAGCAACTCTTTCTGACTGGAACCTCAATTGAAAGGGAGAGCACAACTGGAGGTTTACTATGCTTCTTTGATCGAGCAAAACTGGAACTTGTTTCTAAAGTTGGGATATCCCCTACTTGTAGTGTTGTGCAATGTGCCTGGCACCCAAAATTGAATCAGATCTTTGCAACATCAGGAGATAAAAGCCAAGGCGGAACTCATGTACTATATGATCCAACTCTTAGTGAAAGAGGAGCTCTTGTCTGCGTTGCACGTGCCCCTAGGAAAAAATCTGTTGATGATTTTGTGGCAAACCCAGTCATACACAACCCTCATGCTCTACCCTTATTTAGAGATCAACCAAGCCGTAAACGTGAGCGAGAGAAAACATTGAAGGATCCAGTTAAATCCCATAAGCCTGACCTTCCCATGACAGGACCAGGCTTTGGTGGAAGAGTTGGTGCAAGTAAAGGAAGCTTATTGACCCAGTACCTAATGAAGCAAGGTGGTATGATCAAGGAGACGTGGATGGACGAAGATCCAAGAGAAGCCATACTGAAGTATGCAGATGTTGCAGCAAAAGATCCAAAGTACATAGCTCCAGCTTATGCAGAAACCCAGCCTGAAACAGTTTTTGCGAAATCAGACTCTGAGGACGAGGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

635

Amino Acids

70.01

Weight (kDa)

6.2

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 159 - 245 1.2e-06 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 161 - 238 1.9e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 163 - 243 5.5e-06 WDR5 beta-propeller domain
WD40_Prp19 PF24814 164 - 299 5e-07 Prp19 WD40 domain
Beta-prop_EML PF23409 166 - 429 4.8e-09 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 167 - 242 5.6e-06 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 208 - 347 8e-06 Aladin seven-bladed propeller
Beta-prop_THOC3 PF25174 216 - 307 2.6e-07 THOC3 beta-propeller domain
WD40_Gbeta PF25391 260 - 425 2.4e-06 G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd PF25047 262 - 394 5e-11 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 263 - 428 7.1e-22 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 265 - 426 1.1e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 266 - 429 1.3e-16 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 272 - 482 3.9e-14 CDC20/Fizzy WD40 domain
Beta-prop_Aladin PF25460 272 - 397 4.6e-08 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 278 - 405 3.1e-11 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 281 - 393 2.7e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 282 - 398 4.8e-08 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 283 - 426 1.5e-07 WDR36/Utp21 first beta-propeller
WDR55 PF24796 284 - 396 8.3e-07 WDR55
WDR90_beta-prop_4th PF23342 284 - 390 4.5e-06 WDR90, 4th beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 285 - 428 1.7e-06 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 319 - 409 5.7e-09 WDHD1 first WD40 domain
EIF3I PF24805 320 - 411 6.6e-06 EIF3I
Beta-prop_THOC3 PF25174 321 - 482 1.3e-15 THOC3 beta-propeller domain
WD40 PF00400 357 - 392 2.1e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 992
AasI GACNNNNNNGTC 1 cut(s) 288
Acc16I TGCGCA 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 992
AccB1I GGYRCC 3 cut(s) 403, 831, 1401
AccB7I CCANNNNNTGG 2 cut(s) 198, 1685
AccII CGCG 1 cut(s) 14
AclWI GGATC 8 cut(s) 987, 1187, 1221, 1466, 1631, 1644, 1772, 1817
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 3 cut(s) 512, 660, 1817
AcvI CACGTG 1 cut(s) 1514
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 7 cut(s) 217, 461, 584, 973, 1464, 1730, 1832
AflII CTTAAG 2 cut(s) 785, 1109
AflIII ACRYGT 2 cut(s) 768, 1072
AgeI ACCGGT 1 cut(s) 684
AgsI TTSAA 7 cut(s) 131, 593, 907, 1165, 1292, 1414, 1633
AjiI CACGTC 1 cut(s) 1764
AjnI CCWGG 6 cut(s) 197, 519, 946, 1045, 1397, 1678
AleI CACNNNNGTG 1 cut(s) 506
Alw21I GWGCWC 2 cut(s) 1304, 1498
Alw26I GTCTC 2 cut(s) 417, 1754
AlwI GGATC 8 cut(s) 987, 1187, 1221, 1466, 1631, 1644, 1772, 1817
AlwNI CAGNNNCTG 1 cut(s) 1889
AoxI GGCC 5 cut(s) 309, 516, 522, 944, 1061
ApeKI GCWGC 3 cut(s) 298, 625, 1814
ApoI RAATTY 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 684
AspA2I CCTAGG 1 cut(s) 1520
AspLEI GCGC 2 cut(s) 406, 885
AspS9I GGNCC 6 cut(s) 281, 341, 395, 414, 517, 1676
AsuC2I CCSGG 2 cut(s) 358, 408
AsuHPI GGTGA 4 cut(s) 395, 484, 691, 955
AvaII GGWCC 5 cut(s) 281, 341, 395, 414, 1676
AvrII CCTAGG 1 cut(s) 1520
BaeGI GKGCMC 1 cut(s) 1519
BalI TGGCCA 1 cut(s) 524
BamHI GGATCC 1 cut(s) 1636
BanI GGYRCC 3 cut(s) 403, 831, 1401
BanII GRGCYC 2 cut(s) 674, 1498
BbrPI CACGTG 1 cut(s) 1514
Bbv12I GWGCWC 2 cut(s) 1304, 1498
BbvI GCAGC 3 cut(s) 310, 637, 1826
BccI CCATC 8 cut(s) 104, 374, 866, 1010, 1044, 1118, 1148, 1762
BceAI ACGGC 4 cut(s) 337, 340, 619, 1590
BcgI CGANNNNNNTGC 4 cut(s) 248, 282, 311, 345
BciT130I CCWGG 6 cut(s) 199, 521, 948, 1047, 1399, 1680
BclI TGATCA 2 cut(s) 529, 1752
BcnI CCSGG 2 cut(s) 358, 408
BcoDI GTCTC 2 cut(s) 417, 1754
BfaI CTAG 7 cut(s) 255, 543, 746, 837, 942, 1119, 1521
BfoI RGCGCY 1 cut(s) 407
BfrI CTTAAG 2 cut(s) 785, 1109
BfuAI ACCTGC 1 cut(s) 992
BglII AGATCT 2 cut(s) 21, 1419
BisI GCNGC 6 cut(s) 15, 299, 347, 350, 626, 1815
BlnI CCTAGG 1 cut(s) 1520
BlpI GCTNAGC 1 cut(s) 706
BlsI GCNGC 6 cut(s) 16, 300, 348, 351, 627, 1816
Bme1390I CCNGG 8 cut(s) 199, 358, 408, 521, 948, 1047, 1399, 1680
Bme18I GGWCC 5 cut(s) 281, 341, 395, 414, 1676
BmgBI CACGTC 1 cut(s) 1764
BmgT120I GGNCC 6 cut(s) 281, 341, 395, 414, 517, 1676
BmiI GGNNCC 8 cut(s) 34, 405, 633, 671, 833, 1282, 1403, 1638
BmrFI CCNGG 8 cut(s) 199, 358, 408, 521, 948, 1047, 1399, 1680
BmrI ACTGGG 3 cut(s) 1113, 1550, 1720
BmsI GCATC 3 cut(s) 256, 319, 430
BmuI ACTGGG 3 cut(s) 1113, 1550, 1720
BoxI GACNNNNGTC 1 cut(s) 1179
BpmI CTGGAG 4 cut(s) 650, 688, 1329, 1824
Bpu10I CCTNAGC 1 cut(s) 711
Bpu1102I GCTNAGC 1 cut(s) 706
BpuEI CTTGAG 2 cut(s) 1126, 1184
BpuMI CCSGG 2 cut(s) 358, 408
BsaAI YACGTR 1 cut(s) 1514
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 6 cut(s) 407, 504, 519, 795, 1447, 1520
BsaWI WCCGGW 3 cut(s) 462, 469, 684
BsaXI ACNNNNNCTCC 8 cut(s) 443, 473, 741, 771, 860, 890, 1485, 1515
Bse118I RCCGGY 3 cut(s) 400, 684, 701
Bse3DI GCAATG 2 cut(s) 484, 1397
BseBI CCWGG 6 cut(s) 199, 521, 948, 1047, 1399, 1680
BseDI CCNNGG 6 cut(s) 407, 504, 519, 795, 1447, 1520
BseGI GGATG 7 cut(s) 96, 271, 877, 898, 1055, 1129, 1773
BseMI GCAATG 2 cut(s) 484, 1397
BseMII CTCAG 4 cut(s) 720, 725, 926, 1881
BseRI GAGGAG 6 cut(s) 148, 172, 175, 178, 464, 1506
BseSI GKGCMC 1 cut(s) 1519
BseXI GCAGC 3 cut(s) 310, 637, 1826
BseYI CCCAGC 1 cut(s) 1857
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 5 cut(s) 311, 518, 524, 946, 1063
BshNI GGYRCC 3 cut(s) 403, 831, 1401
BshTI ACCGGT 1 cut(s) 684
BsiEI CGRYCG 1 cut(s) 685
BsiHKAI GWGCWC 2 cut(s) 1304, 1498
BsiSI CCGG 9 cut(s) 357, 401, 407, 463, 470, 622, 685, 702, 1064
BslFI GGGAC 3 cut(s) 510, 779, 1187
BsmAI GTCTC 2 cut(s) 417, 1754
BsmBI CGTCTC 2 cut(s) 417, 1754
BsmFI GGGAC 3 cut(s) 510, 779, 1187
BsmI GAATGC 2 cut(s) 367, 607
BsnI GGCC 5 cut(s) 311, 518, 524, 946, 1063
Bsp1286I GDGCHC 4 cut(s) 674, 1304, 1498, 1519
Bsp1720I GCTNAGC 1 cut(s) 706
BspANI GGCC 5 cut(s) 311, 518, 524, 946, 1063
BspCNI CTCAG 4 cut(s) 719, 724, 925, 1882
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 8 cut(s) 34, 405, 633, 671, 833, 1282, 1403, 1638
BspMI ACCTGC 1 cut(s) 992
BspPI GGATC 8 cut(s) 987, 1187, 1221, 1466, 1631, 1644, 1772, 1817
BspT107I GGYRCC 3 cut(s) 403, 831, 1401
BspTI CTTAAG 2 cut(s) 785, 1109
BsrDI GCAATG 2 cut(s) 484, 1397
BsrFI RCCGGY 3 cut(s) 400, 684, 701
BssAI RCCGGY 3 cut(s) 400, 684, 701
BssECI CCNNGG 6 cut(s) 407, 504, 519, 795, 1447, 1520
BssNI GRCGYC 1 cut(s) 404
BssT1I CCWWGG 4 cut(s) 504, 795, 1447, 1520
Bst2UI CCWGG 6 cut(s) 199, 521, 948, 1047, 1399, 1680
Bst4CI ACNGT 2 cut(s) 828, 1870
Bst6I CTCTTC 3 cut(s) 441, 946, 1687
BstACI GRCGYC 1 cut(s) 404
BstAFI CTTAAG 2 cut(s) 785, 1109
BstAPI GCANNNNNTGC 1 cut(s) 1811
BstBAI YACGTR 1 cut(s) 1514
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 5 cut(s) 706, 711, 912, 1481, 1890
BstF5I GGATG 7 cut(s) 96, 271, 877, 898, 1055, 1129, 1773
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 2 cut(s) 406, 885
BstMAI GTCTC 2 cut(s) 417, 1754
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 4 cut(s) 11, 631, 1155, 1811
BstNI CCWGG 6 cut(s) 199, 521, 948, 1047, 1399, 1680
BstNSI RCATGY 1 cut(s) 772
BstPAI GACNNNNGTC 1 cut(s) 1179
BstSCI CCNGG 8 cut(s) 197, 356, 406, 519, 946, 1045, 1397, 1678
BstSLI GKGCMC 1 cut(s) 1519
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 310, 637, 1826
BstX2I RGATCY 7 cut(s) 21, 1192, 1213, 1419, 1636, 1777, 1822
BstYI RGATCY 7 cut(s) 21, 1192, 1213, 1419, 1636, 1777, 1822
BsuRI GGCC 5 cut(s) 311, 518, 524, 946, 1063
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 1764
BtsCI GGATG 7 cut(s) 96, 271, 877, 898, 1055, 1129, 1773
BtsI GCAGTG 1 cut(s) 878
BtsIMutI CAGTG 3 cut(s) 534, 833, 878
BveI ACCTGC 1 cut(s) 992
Cac8I GCNNGC 1 cut(s) 402
CaiI CAGNNNCTG 1 cut(s) 1889
CciI TCATGA 1 cut(s) 982
CfoI GCGC 2 cut(s) 406, 885
Cfr10I RCCGGY 3 cut(s) 400, 684, 701
Cfr13I GGNCC 6 cut(s) 281, 341, 395, 414, 517, 1676
CpoI CGGWCCG 2 cut(s) 281, 341
CseI GACGC 1 cut(s) 20
Csp6I GTAC 7 cut(s) 216, 460, 583, 972, 1463, 1729, 1831
CspAI ACCGGT 1 cut(s) 684
CspI CGGWCCG 2 cut(s) 281, 341
CviAII CATG 5 cut(s) 769, 983, 1460, 1574, 1669
CviQI GTAC 7 cut(s) 216, 460, 583, 972, 1463, 1729, 1831
DdeI CTNAG 5 cut(s) 706, 711, 912, 1481, 1890
DinI GGCGCC 1 cut(s) 405
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 3 cut(s) 441, 946, 1687
EarI CTCTTC 3 cut(s) 441, 946, 1687
EciI GGCGGA 4 cut(s) 20, 32, 151, 1467
Ecl136II GAGCTC 1 cut(s) 1496
Eco130I CCWWGG 4 cut(s) 504, 795, 1447, 1520
Eco147I AGGCCT 1 cut(s) 946
Eco24I GRGCYC 2 cut(s) 674, 1498
Eco32I GATATC 1 cut(s) 1368
Eco47I GGWCC 5 cut(s) 281, 341, 395, 414, 1676
Eco53kI GAGCTC 1 cut(s) 1496
Eco57I CTGAAG 3 cut(s) 512, 660, 1817
Eco72I CACGTG 1 cut(s) 1514
EcoICRI GAGCTC 1 cut(s) 1496
EcoRII CCWGG 6 cut(s) 197, 519, 946, 1045, 1397, 1678
EcoRV GATATC 1 cut(s) 1368
EcoT14I CCWWGG 4 cut(s) 504, 795, 1447, 1520
EcoT38I GRGCYC 2 cut(s) 674, 1498
EgeI GGCGCC 1 cut(s) 405
EheI GGCGCC 1 cut(s) 405
ErhI CCWWGG 4 cut(s) 504, 795, 1447, 1520
Esp3I CGTCTC 2 cut(s) 417, 1754
FaeI CATG 5 cut(s) 772, 986, 1463, 1577, 1672
FaqI GGGAC 3 cut(s) 510, 779, 1187
FatI CATG 5 cut(s) 768, 982, 1459, 1573, 1668
FbaI TGATCA 2 cut(s) 529, 1752
Fnu4HI GCNGC 6 cut(s) 15, 299, 347, 350, 626, 1815
FokI GGATG 7 cut(s) 83, 278, 884, 905, 1062, 1136, 1780
FriOI GRGCYC 2 cut(s) 674, 1498
Fsp4HI GCNGC 6 cut(s) 15, 299, 347, 350, 626, 1815
FspBI CTAG 7 cut(s) 255, 543, 746, 837, 942, 1119, 1521
FspI TGCGCA 1 cut(s) 884
GlaI GCGC 2 cut(s) 405, 884
GluI GCNGC 6 cut(s) 15, 299, 347, 350, 626, 1815
GsaI CCCAGC 1 cut(s) 1861
GsuI CTGGAG 4 cut(s) 650, 688, 1329, 1824
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 5 cut(s) 311, 518, 524, 946, 1063
HapII CCGG 9 cut(s) 357, 401, 407, 463, 470, 622, 685, 702, 1064
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 406, 885
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 5 cut(s) 772, 986, 1463, 1577, 1672
Hin6I GCGC 2 cut(s) 404, 883
HinP1I GCGC 2 cut(s) 404, 883
HindIII AAGCTT 1 cut(s) 1714
HinfI GANTC 6 cut(s) 260, 434, 466, 1131, 1414, 1886
HpaII CCGG 9 cut(s) 357, 401, 407, 463, 470, 622, 685, 702, 1064
HphI GGTGA 4 cut(s) 395, 484, 691, 955
Hpy166II GTNNAC 4 cut(s) 293, 824, 1316, 1610
Hpy8I GTNNAC 4 cut(s) 293, 824, 1316, 1610
Hpy99I CGWCG 8 cut(s) 14, 32, 117, 320, 323, 326, 377, 380
HpyAV CCTTC 9 cut(s) 137, 179, 183, 487, 635, 980, 1159, 1627, 1673
HpyCH4III ACNGT 2 cut(s) 828, 1870
HpyCH4IV ACGT 5 cut(s) 1074, 1180, 1513, 1612, 1763
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 631, 1155, 1811
HpyF3I CTNAG 5 cut(s) 706, 711, 912, 1481, 1890
HpySE526I ACGT 5 cut(s) 1074, 1180, 1513, 1612, 1763
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 5 cut(s) 772, 986, 1463, 1577, 1672
HspAI GCGC 2 cut(s) 404, 883
KasI GGCGCC 1 cut(s) 403
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 2 cut(s) 529, 1752
LmnI GCTCC 5 cut(s) 32, 631, 669, 1493, 1843
Lsp1109I GCAGC 3 cut(s) 310, 637, 1826
LweI GCATC 3 cut(s) 256, 319, 430
MaeI CTAG 7 cut(s) 255, 543, 746, 837, 942, 1119, 1521
MaeII ACGT 5 cut(s) 1074, 1180, 1513, 1612, 1763
MaeIII GTNAC 5 cut(s) 116, 697, 731, 876, 961
MboII GAAGA 4 cut(s) 458, 963, 1704, 1787
MfeI CAATTG 1 cut(s) 1287
MflI RGATCY 7 cut(s) 21, 1192, 1213, 1419, 1636, 1777, 1822
MhlI GDGCHC 4 cut(s) 674, 1304, 1498, 1519
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 5 cut(s) 44, 205, 304, 1287, 1409
MluNI TGGCCA 1 cut(s) 524
Mly113I GGCGCC 1 cut(s) 404
MlyI GAGTC 1 cut(s) 1880
MmeI TCCRAC 2 cut(s) 339, 1499
Mox20I TGGCCA 1 cut(s) 524
MreI CGCCGGCG 1 cut(s) 400
MroNI GCCGGC 1 cut(s) 400
MscI TGGCCA 1 cut(s) 524
MseI TTAA 5 cut(s) 786, 897, 1041, 1110, 1644
MslI CAYNNNNRTG 2 cut(s) 506, 1092
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 628
MspCI CTTAAG 2 cut(s) 785, 1109
MspI CCGG 9 cut(s) 357, 401, 407, 463, 470, 622, 685, 702, 1064
MspR9I CCNGG 8 cut(s) 199, 358, 408, 521, 948, 1047, 1399, 1680
MunI CAATTG 1 cut(s) 1287
Mva1269I GAATGC 2 cut(s) 367, 607
MvaI CCWGG 6 cut(s) 199, 521, 948, 1047, 1399, 1680
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 11, 631, 1155, 1811
NaeI GCCGGC 1 cut(s) 402
NarI GGCGCC 1 cut(s) 404
NciI CCSGG 2 cut(s) 358, 408
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 5 cut(s) 772, 986, 1463, 1577, 1672
NlaIV GGNNCC 8 cut(s) 34, 405, 633, 671, 833, 1282, 1403, 1638
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 4 cut(s) 697, 731, 876, 961
NsbI TGCGCA 1 cut(s) 884
NspI RCATGY 1 cut(s) 772
OliI CACNNNNGTG 1 cut(s) 506
PagI TCATGA 1 cut(s) 982
PaqCI CACCTGC 1 cut(s) 992
PceI AGGCCT 1 cut(s) 946
PciI ACATGT 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 2 cut(s) 367, 607
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 5 cut(s) 260, 434, 466, 1131, 1414
PflMI CCANNNNNTGG 2 cut(s) 198, 1685
PfoI TCCNGGA 1 cut(s) 356
PinAI ACCGGT 1 cut(s) 684
PkrI GCNGC 6 cut(s) 16, 300, 348, 351, 627, 1816
PleI GAGTC 1 cut(s) 1880
PluTI GGCGCC 1 cut(s) 407
PmaCI CACGTG 1 cut(s) 1514
PmlI CACGTG 1 cut(s) 1514
PpsI GAGTC 1 cut(s) 1880
Ppu21I YACGTR 1 cut(s) 1514
PscI ACATGT 1 cut(s) 768
PshAI GACNNNNGTC 1 cut(s) 1179
Psp124BI GAGCTC 1 cut(s) 1498
Psp6I CCWGG 6 cut(s) 197, 519, 946, 1045, 1397, 1678
PspCI CACGTG 1 cut(s) 1514
PspFI CCCAGC 1 cut(s) 1857
PspGI CCWGG 6 cut(s) 197, 519, 946, 1045, 1397, 1678
PspN4I GGNNCC 8 cut(s) 34, 405, 633, 671, 833, 1282, 1403, 1638
PspPI GGNCC 6 cut(s) 281, 341, 395, 414, 517, 1676
PstNI CAGNNNCTG 1 cut(s) 1889
PsuI RGATCY 7 cut(s) 21, 1192, 1213, 1419, 1636, 1777, 1822
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 7 cut(s) 217, 461, 584, 973, 1464, 1730, 1832
RsaNI GTAC 7 cut(s) 216, 460, 583, 972, 1463, 1729, 1831
RseI CAYNNNNRTG 2 cut(s) 506, 1092
Rsr2I CGGWCCG 2 cut(s) 281, 341
RsrII CGGWCCG 2 cut(s) 281, 341
SacI GAGCTC 1 cut(s) 1498
SaqAI TTAA 5 cut(s) 786, 897, 1041, 1110, 1644
SatI GCNGC 6 cut(s) 15, 299, 347, 350, 626, 1815
Sau96I GGNCC 6 cut(s) 281, 341, 395, 414, 517, 1676
SchI GAGTC 1 cut(s) 1880
ScrFI CCNGG 8 cut(s) 199, 358, 408, 521, 948, 1047, 1399, 1680
SduI GDGCHC 4 cut(s) 674, 1304, 1498, 1519
SfaNI GCATC 3 cut(s) 256, 319, 430
SfoI GGCGCC 1 cut(s) 405
SgrAI CRCCGGYG 1 cut(s) 400
SinI GGWCC 5 cut(s) 281, 341, 395, 414, 1676
SmiMI CAYNNNNRTG 2 cut(s) 506, 1092
SmlI CTYRAG 4 cut(s) 785, 1109, 1141, 1199
SmoI CTYRAG 4 cut(s) 785, 1109, 1141, 1199
Sse9I AATT 5 cut(s) 44, 205, 304, 1287, 1409
SseBI AGGCCT 1 cut(s) 946
SspDI GGCGCC 1 cut(s) 403
SspMI CTAG 7 cut(s) 255, 543, 746, 837, 942, 1119, 1521
SstI GAGCTC 1 cut(s) 1498
StuI AGGCCT 1 cut(s) 946
StyD4I CCNGG 8 cut(s) 197, 356, 406, 519, 946, 1045, 1397, 1678
StyI CCWWGG 4 cut(s) 504, 795, 1447, 1520
TaaI ACNGT 2 cut(s) 828, 1870
TaiI ACGT 5 cut(s) 1077, 1183, 1516, 1615, 1766
TaqI TCGA 2 cut(s) 90, 1333
TasI AATT 5 cut(s) 44, 205, 304, 1287, 1409
TatI WGTACW 3 cut(s) 971, 1462, 1830
TauI GCSGC 3 cut(s) 17, 349, 352
TfiI GAWTC 5 cut(s) 260, 434, 466, 1131, 1414
Tru1I TTAA 5 cut(s) 786, 897, 1041, 1110, 1644
Tru9I TTAA 5 cut(s) 786, 897, 1041, 1110, 1644
TscAI CASTG 3 cut(s) 541, 833, 885
TseFI GTSAC 4 cut(s) 697, 731, 876, 961
TseI GCWGC 3 cut(s) 298, 625, 1814
Tsp45I GTSAC 4 cut(s) 697, 731, 876, 961
TspDTI ATGAA 4 cut(s) 614, 999, 1202, 1751
TspGWI ACGGA 4 cut(s) 45, 203, 750, 1009
TspRI CASTG 3 cut(s) 541, 833, 885
Van91I CCANNNNNTGG 2 cut(s) 198, 1685
Vha464I CTTAAG 2 cut(s) 785, 1109
VpaK11BI GGWCC 5 cut(s) 281, 341, 395, 414, 1676
XapI RAATTY 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 542
XceI RCATGY 1 cut(s) 772
XmaJI CCTAGG 1 cut(s) 1520
XspI CTAG 7 cut(s) 255, 543, 746, 837, 942, 1119, 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.