Rh6DG286200

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011288
Physical Location & Seq
Reverse (-)
48122653 .. 48125948
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG286200.1

Sequence Viewer

Length: 1491 bp
ATGGCGGACGACGCAGCGGAGATCTACGACGGAGCCAGAGCCGAATTTCCTCTCACATTCGGTAAGCAATCCAAATCTCAAACCCCTCTCGAAGCCATCCACAATACGACCCGTCGTAACCAGAACCTTCAACAACAGCAACGACAACCACCACCCTCCTCCGCCGACCTCCCTTCTCTCTCCTCCTCCTCCTCCAAAACCTGGCTCAATTCCCTCCGTACCGCCAAAACCCCCAACCCTAACCCTAACCCTAGCGATTCGGATGCAACCCTTATCGGACCGCCTCGTCCACCGCAGCCTGATTCGGCCTCCGACGACGACGGCGATGCCCTCATCGGACCGCCGCCGCCTCCCGGGAGTGCCGAGAGCGACGACGATGGTGAGATGATTGGACCGCCGGCGCCGGGGAGGTCCAATAGAGACGATTGGGATTCCGATGCGGAAGAGGAGAACAAGTACCGGATTCCGGTGAGCAATGAGATTGTGCTGAAGGGACACACCAAGGTGGTTTCGGCCCTCGCCATTGATCACACTGGTTCTAGAGTTATATCTGGTAGCTATGACTATTCTGTGAGAATGTACGATTTTCAAGGAATGAATGCAAAGTTGCAATCTTTCCGGCAGCTGGAGCCGTCTGAAGGTCATCAGGTCAGAACTATAAGCTGGAGCCCCACCGGCGACCGGTTTCTGTGTGTCACCGGCTCAGCTCAGGCAAAGATTTATGATCGTGACGGACTTACGCTAGGAGAGTTTGTAAAAGGGGACATGTATATTCGTGATCTTAAGAATACCAAGGGGCATATTACTGGATTGACCTGTGGACAGTGGCACCCTAGAAAGAAAGACGAAATCTTGACATCATCGGAGGATGGGTCACTGCGCATTTGGGATGTTAATAACTTCAATACTCAGAAACAGGTAATCAAGCCAAAACTTGCTAGGCCTGGAAGAGTTCCAGTCACCACTTGTACTTGGGATCATGAAGGACAACGGATTGCAGGTGGTATAGGAGATGGTTCTATACAAGTTTGGAACATTAAGCCCGGATGGGGAAGTAGGCCGGACATACACGTTCAGGAAGCTCATTCAGATGATATTACTGGGCTTAAGTTTTCTAGGGATGGAAGAATCTTACTCTCAAGAAGCTGTGATGGCACTTTGAAGGTTTGGGACTTACGTCAGATGAAAGATCCTCTGAAGGTGTTTCAGGATCTCCCAAATAACTATGCACAAACCAATGTCGCATTTAGTCCTGATGAGCAACTCTTTCTGACTGGAACCTCAATTGAAAGGGAGAGCACAACTGGAGGTTTACTATGCTTCTTTGATCGAGCAAAACTGGAACTTGTTTCTAAAGTTGGGATATCCGCTACTTGTAGTGTTGTGCAATGTGCCTGGCACCCAAAATTGAATCAGGTAATACTCTCATTGCTAACATCCTTGTTTAATCAATCGTTTTCTTTAGTCTTCCATGCATTGTTGATCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

496

Amino Acids

54.7

Weight (kDa)

5.81

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 158 - 244 1.5e-06 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 159 - 198 1e-05 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 160 - 237 2.9e-06 CDC20/Fizzy WD40 domain
WD40 PF00400 162 - 195 1e-05 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 162 - 242 9.8e-07 WDR5 beta-propeller domain
Beta-prop_EML PF23409 165 - 428 2.6e-09 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 166 - 231 2.5e-06 THOC3 beta-propeller domain
Beta-prop_THOC3 PF25174 215 - 306 1.2e-08 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 258 - 347 4.5e-07 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 262 - 427 4.4e-22 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 264 - 425 5.6e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 265 - 428 8.4e-17 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 269 - 426 8.2e-16 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 271 - 472 2.3e-13 CDC20/Fizzy WD40 domain
Beta-prop_Aladin PF25460 271 - 396 3.5e-08 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 277 - 421 1.3e-11 Echinoderm microtubule-associated protein second beta-propeller
WDR55 PF24796 279 - 393 6.5e-07 WDR55
WD40_MABP1-WDR62_2nd PF24782 280 - 392 1.8e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 281 - 397 3.1e-08 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 282 - 425 4.8e-08 WDR36/Utp21 first beta-propeller
WDR90_beta-prop_4th PF23342 283 - 389 3e-06 WDR90, 4th beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 284 - 427 1.1e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 285 - 397 3.2e-11 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 318 - 408 4.4e-09 WDHD1 first WD40 domain
EIF3I PF24805 319 - 410 4.5e-06 EIF3I
Beta-prop_THOC3 PF25174 320 - 472 4.9e-14 THOC3 beta-propeller domain
WD40_Gbeta PF25391 326 - 428 9.2e-06 G protein beta WD-40 repeat protein
WD40 PF00400 356 - 391 1.5e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 989
AasI GACNNNNNNGTC 1 cut(s) 285
Acc16I TGCGCA 1 cut(s) 881
Acc36I ACCTGC 1 cut(s) 989
AccB1I GGYRCC 3 cut(s) 400, 828, 1398
AccB7I CCANNNNNTGG 1 cut(s) 201
AclWI GGATC 3 cut(s) 984, 1184, 1218
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 3 cut(s) 509, 657, 1217
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 4 cut(s) 220, 458, 581, 970
AfiI CCNNNNNNNGG 8 cut(s) 201, 353, 404, 466, 625, 638, 681, 1049
AflII CTTAAG 2 cut(s) 782, 1106
AflIII ACRYGT 2 cut(s) 765, 1069
AgeI ACCGGT 1 cut(s) 681
AgsI TTSAA 6 cut(s) 131, 590, 904, 1162, 1289, 1411
AjnI CCWGG 3 cut(s) 200, 943, 1394
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 6 cut(s) 558, 625, 663, 707, 1082, 1146
AluI AGCT 6 cut(s) 558, 625, 663, 707, 1082, 1146
Alw21I GWGCWC 1 cut(s) 1301
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 3 cut(s) 984, 1184, 1218
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 4 cut(s) 306, 513, 941, 1058
ApeKI GCWGC 3 cut(s) 14, 295, 622
ApoI RAATTY 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 681
AspLEI GCGC 2 cut(s) 403, 882
AspS9I GGNCC 5 cut(s) 278, 338, 392, 411, 514
AsuC2I CCSGG 4 cut(s) 354, 355, 405, 1044
AsuHPI GGTGA 4 cut(s) 392, 481, 688, 952
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 4 cut(s) 278, 338, 392, 411
BanI GGYRCC 3 cut(s) 400, 828, 1398
BanII GRGCYC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 1459
Bbv12I GWGCWC 1 cut(s) 1301
BbvI GCAGC 3 cut(s) 26, 307, 634
BccI CCATC 7 cut(s) 104, 371, 863, 1007, 1041, 1115, 1145
BceAI ACGGC 2 cut(s) 337, 616
BcgI CGANNNNNNTGC 4 cut(s) 245, 279, 308, 342
BciT130I CCWGG 3 cut(s) 202, 945, 1396
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 4 cut(s) 354, 355, 405, 1044
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 6 cut(s) 252, 540, 743, 834, 939, 1116
BfoI RGCGCY 1 cut(s) 404
BfrI CTTAAG 2 cut(s) 782, 1106
BfuAI ACCTGC 1 cut(s) 989
BglI GCCNNNNNGGC 1 cut(s) 675
BglII AGATCT 1 cut(s) 21
BisI GCNGC 5 cut(s) 15, 296, 344, 347, 623
BlpI GCTNAGC 1 cut(s) 703
BlsI GCNGC 5 cut(s) 16, 297, 345, 348, 624
Bme1390I CCNGG 7 cut(s) 202, 354, 355, 405, 945, 1044, 1396
Bme18I GGWCC 4 cut(s) 278, 338, 392, 411
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 5 cut(s) 278, 338, 392, 411, 514
BmiI GGNNCC 7 cut(s) 34, 402, 630, 668, 830, 1279, 1400
BmrFI CCNGG 7 cut(s) 202, 354, 355, 405, 945, 1044, 1396
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 3 cut(s) 253, 316, 427
BmuI ACTGGG 1 cut(s) 1110
BoxI GACNNNNGTC 1 cut(s) 1176
BpiI GAAGAC 1 cut(s) 1459
BpmI CTGGAG 3 cut(s) 647, 685, 1326
Bpu10I CCTNAGC 1 cut(s) 708
Bpu1102I GCTNAGC 1 cut(s) 703
BpuEI CTTGAG 1 cut(s) 1123
BpuMI CCSGG 4 cut(s) 354, 355, 405, 1044
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 4 cut(s) 353, 404, 501, 792
BsaWI WCCGGW 3 cut(s) 459, 466, 681
BsaXI ACNNNNNCTCC 6 cut(s) 440, 470, 738, 768, 857, 887
Bsc4I CCNNNNNNNGG 8 cut(s) 201, 353, 404, 466, 625, 638, 681, 1049
Bse118I RCCGGY 4 cut(s) 397, 674, 681, 698
Bse1I ACTGG 7 cut(s) 538, 811, 956, 1105, 1279, 1309, 1344
Bse3DI GCAATG 3 cut(s) 481, 1394, 1427
BseBI CCWGG 3 cut(s) 202, 945, 1396
BseDI CCNNGG 4 cut(s) 353, 404, 501, 792
BseGI GGATG 7 cut(s) 96, 268, 874, 895, 1052, 1126, 1436
BseLI CCNNNNNNNGG 8 cut(s) 201, 353, 404, 466, 625, 638, 681, 1049
BseMI GCAATG 3 cut(s) 481, 1394, 1427
BseMII CTCAG 3 cut(s) 717, 722, 923
BseNI ACTGG 7 cut(s) 538, 811, 956, 1105, 1279, 1309, 1344
BseRI GAGGAG 6 cut(s) 148, 172, 175, 178, 181, 461
BseXI GCAGC 3 cut(s) 26, 307, 634
Bsh1285I CGRYCG 1 cut(s) 682
BshFI GGCC 4 cut(s) 308, 515, 943, 1060
BshNI GGYRCC 3 cut(s) 400, 828, 1398
BshTI ACCGGT 1 cut(s) 681
BsiEI CGRYCG 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 1301
BsiHKCI CYCGRG 1 cut(s) 353
BslFI GGGAC 3 cut(s) 507, 776, 1184
BslI CCNNNNNNNGG 8 cut(s) 201, 353, 404, 466, 625, 638, 681, 1049
BsmAI GTCTC 1 cut(s) 414
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 3 cut(s) 507, 776, 1184
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 4 cut(s) 308, 515, 943, 1060
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 671, 1301
Bsp143I GATC 9 cut(s) 21, 526, 724, 778, 976, 1189, 1210, 1327, 1482
Bsp1720I GCTNAGC 1 cut(s) 703
BspANI GGCC 4 cut(s) 308, 515, 943, 1060
BspCNI CTCAG 3 cut(s) 716, 721, 922
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 7 cut(s) 34, 402, 630, 668, 830, 1279, 1400
BspMI ACCTGC 1 cut(s) 989
BspPI GGATC 3 cut(s) 984, 1184, 1218
BspT107I GGYRCC 3 cut(s) 400, 828, 1398
BspTI CTTAAG 2 cut(s) 782, 1106
BsrDI GCAATG 3 cut(s) 481, 1394, 1427
BsrFI RCCGGY 4 cut(s) 397, 674, 681, 698
BsrI ACTGG 7 cut(s) 538, 811, 956, 1105, 1279, 1309, 1344
BssAI RCCGGY 4 cut(s) 397, 674, 681, 698
BssECI CCNNGG 4 cut(s) 353, 404, 501, 792
BssMI GATC 9 cut(s) 21, 526, 724, 778, 976, 1189, 1210, 1327, 1482
BssNI GRCGYC 1 cut(s) 401
BssT1I CCWWGG 2 cut(s) 501, 792
Bst2UI CCWGG 3 cut(s) 202, 945, 1396
Bst4CI ACNGT 1 cut(s) 825
Bst6I CTCTTC 2 cut(s) 438, 943
BstACI GRCGYC 1 cut(s) 401
BstAFI CTTAAG 2 cut(s) 782, 1106
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 703, 708, 909
BstF5I GGATG 7 cut(s) 96, 268, 874, 895, 1052, 1126, 1436
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 2 cut(s) 403, 882
BstKTI GATC 9 cut(s) 24, 529, 727, 781, 979, 1192, 1213, 1330, 1485
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 9 cut(s) 21, 526, 724, 778, 976, 1189, 1210, 1327, 1482
BstMCI CGRYCG 1 cut(s) 682
BstMWI GCNNNNNNNGC 4 cut(s) 11, 628, 675, 1152
BstNI CCWGG 3 cut(s) 202, 945, 1396
BstNSI RCATGY 1 cut(s) 769
BstPAI GACNNNNGTC 1 cut(s) 1176
BstSCI CCNGG 7 cut(s) 200, 352, 353, 403, 943, 1042, 1394
BstV1I GCAGC 3 cut(s) 26, 307, 634
BstV2I GAAGAC 1 cut(s) 1459
BstX2I RGATCY 3 cut(s) 21, 1189, 1210
BstYI RGATCY 3 cut(s) 21, 1189, 1210
BsuRI GGCC 4 cut(s) 308, 515, 943, 1060
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 7 cut(s) 96, 268, 874, 895, 1052, 1126, 1436
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 3 cut(s) 531, 830, 875
BveI ACCTGC 1 cut(s) 989
Cac8I GCNNGC 1 cut(s) 399
CciI TCATGA 1 cut(s) 979
CfoI GCGC 2 cut(s) 403, 882
Cfr10I RCCGGY 4 cut(s) 397, 674, 681, 698
Cfr13I GGNCC 5 cut(s) 278, 338, 392, 411, 514
Cfr9I CCCGGG 1 cut(s) 353
CpoI CGGWCCG 2 cut(s) 278, 338
CseI GACGC 1 cut(s) 20
Csp6I GTAC 4 cut(s) 219, 457, 580, 969
CspAI ACCGGT 1 cut(s) 681
CspI CGGWCCG 2 cut(s) 278, 338
CviAII CATG 3 cut(s) 766, 980, 1472
CviQI GTAC 4 cut(s) 219, 457, 580, 969
DdeI CTNAG 3 cut(s) 703, 708, 909
DinI GGCGCC 1 cut(s) 402
DpnI GATC 9 cut(s) 23, 528, 726, 780, 978, 1191, 1212, 1329, 1484
DpnII GATC 9 cut(s) 21, 526, 724, 778, 976, 1189, 1210, 1327, 1482
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 438, 943
EarI CTCTTC 2 cut(s) 438, 943
EciI GGCGGA 2 cut(s) 20, 151
Eco130I CCWWGG 2 cut(s) 501, 792
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 671
Eco32I GATATC 1 cut(s) 1365
Eco47I GGWCC 4 cut(s) 278, 338, 392, 411
Eco57I CTGAAG 3 cut(s) 509, 657, 1217
Eco88I CYCGRG 1 cut(s) 353
EcoRII CCWGG 3 cut(s) 200, 943, 1394
EcoRV GATATC 1 cut(s) 1365
EcoT14I CCWWGG 2 cut(s) 501, 792
EcoT22I ATGCAT 1 cut(s) 1477
EcoT38I GRGCYC 1 cut(s) 671
EgeI GGCGCC 1 cut(s) 402
EheI GGCGCC 1 cut(s) 402
ErhI CCWWGG 2 cut(s) 501, 792
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 3 cut(s) 769, 983, 1475
FaqI GGGAC 3 cut(s) 507, 776, 1184
FatI CATG 3 cut(s) 765, 979, 1471
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 5 cut(s) 15, 296, 344, 347, 623
FokI GGATG 7 cut(s) 83, 275, 881, 902, 1059, 1133, 1423
FriOI GRGCYC 1 cut(s) 671
Fsp4HI GCNGC 5 cut(s) 15, 296, 344, 347, 623
FspBI CTAG 6 cut(s) 252, 540, 743, 834, 939, 1116
FspI TGCGCA 1 cut(s) 881
GlaI GCGC 2 cut(s) 402, 881
GluI GCNGC 5 cut(s) 15, 296, 344, 347, 623
GsuI CTGGAG 3 cut(s) 647, 685, 1326
HaeII RGCGCY 1 cut(s) 404
HaeIII GGCC 4 cut(s) 308, 515, 943, 1060
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 403, 882
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 3 cut(s) 769, 983, 1475
Hin6I GCGC 2 cut(s) 401, 880
HinP1I GCGC 2 cut(s) 401, 880
HinfI GANTC 6 cut(s) 257, 302, 431, 463, 1128, 1411
HphI GGTGA 4 cut(s) 392, 481, 688, 952
Hpy166II GTNNAC 3 cut(s) 290, 821, 1313
Hpy8I GTNNAC 3 cut(s) 290, 821, 1313
Hpy99I CGWCG 8 cut(s) 14, 32, 117, 317, 320, 323, 374, 377
HpyAV CCTTC 7 cut(s) 137, 183, 484, 632, 977, 1156, 1192
HpyCH4III ACNGT 1 cut(s) 825
HpyCH4IV ACGT 2 cut(s) 1071, 1177
HpyCH4V TGCA 7 cut(s) 266, 602, 610, 998, 1229, 1387, 1475
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 628, 675, 1152
HpyF3I CTNAG 3 cut(s) 703, 708, 909
HpySE526I ACGT 2 cut(s) 1071, 1177
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 3 cut(s) 769, 983, 1475
HspAI GCGC 2 cut(s) 401, 880
KasI GGCGCC 1 cut(s) 400
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 9 cut(s) 21, 526, 724, 778, 976, 1189, 1210, 1327, 1482
LmnI GCTCC 3 cut(s) 32, 628, 666
Lsp1109I GCAGC 3 cut(s) 26, 307, 634
LweI GCATC 3 cut(s) 253, 316, 427
MaeI CTAG 6 cut(s) 252, 540, 743, 834, 939, 1116
MaeII ACGT 2 cut(s) 1071, 1177
MaeIII GTNAC 5 cut(s) 116, 694, 728, 873, 958
MalI GATC 9 cut(s) 23, 528, 726, 780, 978, 1191, 1212, 1329, 1484
MboI GATC 9 cut(s) 21, 526, 724, 778, 976, 1189, 1210, 1327, 1482
MboII GAAGA 4 cut(s) 455, 960, 1137, 1459
MfeI CAATTG 1 cut(s) 1284
MflI RGATCY 3 cut(s) 21, 1189, 1210
MhlI GDGCHC 2 cut(s) 671, 1301
MluCI AATT 4 cut(s) 44, 208, 1284, 1406
Mly113I GGCGCC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 1477
MreI CGCCGGCG 1 cut(s) 397
MroNI GCCGGC 1 cut(s) 397
MseI TTAA 5 cut(s) 783, 894, 1038, 1107, 1446
MslI CAYNNNNRTG 2 cut(s) 503, 1089
MspA1I CMGCKG 2 cut(s) 17, 625
MspCI CTTAAG 2 cut(s) 782, 1106
MspR9I CCNGG 7 cut(s) 202, 354, 355, 405, 945, 1044, 1396
MunI CAATTG 1 cut(s) 1284
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 3 cut(s) 202, 945, 1396
MwoI GCNNNNNNNGC 4 cut(s) 11, 628, 675, 1152
NaeI GCCGGC 1 cut(s) 399
NarI GGCGCC 1 cut(s) 401
NciI CCSGG 4 cut(s) 354, 355, 405, 1044
NdeII GATC 9 cut(s) 21, 526, 724, 778, 976, 1189, 1210, 1327, 1482
NgoMIV GCCGGC 1 cut(s) 397
NlaIII CATG 3 cut(s) 769, 983, 1475
NlaIV GGNNCC 7 cut(s) 34, 402, 630, 668, 830, 1279, 1400
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 4 cut(s) 694, 728, 873, 958
NsbI TGCGCA 1 cut(s) 881
NsiI ATGCAT 1 cut(s) 1477
NspI RCATGY 1 cut(s) 769
OliI CACNNNNGTG 1 cut(s) 503
PagI TCATGA 1 cut(s) 979
PaqCI CACCTGC 1 cut(s) 989
PceI AGGCCT 1 cut(s) 943
PciI ACATGT 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 1 cut(s) 604
PdiI GCCGGC 1 cut(s) 399
PfeI GAWTC 6 cut(s) 257, 302, 431, 463, 1128, 1411
PflMI CCANNNNNTGG 1 cut(s) 201
PinAI ACCGGT 1 cut(s) 681
PkrI GCNGC 5 cut(s) 16, 297, 345, 348, 624
PluTI GGCGCC 1 cut(s) 404
PscI ACATGT 1 cut(s) 765
PshAI GACNNNNGTC 1 cut(s) 1176
Psp6I CCWGG 3 cut(s) 200, 943, 1394
PspGI CCWGG 3 cut(s) 200, 943, 1394
PspN4I GGNNCC 7 cut(s) 34, 402, 630, 668, 830, 1279, 1400
PspPI GGNCC 5 cut(s) 278, 338, 392, 411, 514
PsuI RGATCY 3 cut(s) 21, 1189, 1210
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 4 cut(s) 220, 458, 581, 970
RsaNI GTAC 4 cut(s) 219, 457, 580, 969
RseI CAYNNNNRTG 2 cut(s) 503, 1089
Rsr2I CGGWCCG 2 cut(s) 278, 338
RsrII CGGWCCG 2 cut(s) 278, 338
SaqAI TTAA 5 cut(s) 783, 894, 1038, 1107, 1446
SatI GCNGC 5 cut(s) 15, 296, 344, 347, 623
Sau3AI GATC 9 cut(s) 21, 526, 724, 778, 976, 1189, 1210, 1327, 1482
Sau96I GGNCC 5 cut(s) 278, 338, 392, 411, 514
ScrFI CCNGG 7 cut(s) 202, 354, 355, 405, 945, 1044, 1396
SduI GDGCHC 2 cut(s) 671, 1301
SfaNI GCATC 3 cut(s) 253, 316, 427
SfoI GGCGCC 1 cut(s) 402
SgrAI CRCCGGYG 2 cut(s) 397, 674
SinI GGWCC 4 cut(s) 278, 338, 392, 411
SmaI CCCGGG 1 cut(s) 355
SmiMI CAYNNNNRTG 2 cut(s) 503, 1089
SmlI CTYRAG 3 cut(s) 782, 1106, 1138
SmoI CTYRAG 3 cut(s) 782, 1106, 1138
Sse9I AATT 4 cut(s) 44, 208, 1284, 1406
SseBI AGGCCT 1 cut(s) 943
SspDI GGCGCC 1 cut(s) 400
SspMI CTAG 6 cut(s) 252, 540, 743, 834, 939, 1116
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 7 cut(s) 200, 352, 353, 403, 943, 1042, 1394
StyI CCWWGG 2 cut(s) 501, 792
TaaI ACNGT 1 cut(s) 825
TaiI ACGT 2 cut(s) 1074, 1180
TaqI TCGA 2 cut(s) 90, 1330
TasI AATT 4 cut(s) 44, 208, 1284, 1406
TatI WGTACW 1 cut(s) 968
TauI GCSGC 2 cut(s) 346, 349
TfiI GAWTC 6 cut(s) 257, 302, 431, 463, 1128, 1411
Tru1I TTAA 5 cut(s) 783, 894, 1038, 1107, 1446
Tru9I TTAA 5 cut(s) 783, 894, 1038, 1107, 1446
TscAI CASTG 3 cut(s) 538, 830, 882
TseFI GTSAC 4 cut(s) 694, 728, 873, 958
TseI GCWGC 3 cut(s) 14, 295, 622
Tsp45I GTSAC 4 cut(s) 694, 728, 873, 958
TspDTI ATGAA 3 cut(s) 611, 996, 1199
TspGWI ACGGA 4 cut(s) 45, 206, 747, 1006
TspMI CCCGGG 1 cut(s) 353
TspRI CASTG 3 cut(s) 538, 830, 882
Van91I CCANNNNNTGG 1 cut(s) 201
Vha464I CTTAAG 2 cut(s) 782, 1106
VpaK11BI GGWCC 4 cut(s) 278, 338, 392, 411
XapI RAATTY 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 539
XceI RCATGY 1 cut(s) 769
XmaI CCCGGG 1 cut(s) 353
XspI CTAG 6 cut(s) 252, 540, 743, 834, 939, 1116
Zsp2I ATGCAT 1 cut(s) 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.