Rroxscaffold_7G00182460

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011288
Physical Location & Seq
Forward (+)
21555598 .. 21558790
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182460.1

Sequence Viewer

Length: 1896 bp
ATGGCGGATGACGCGGCGGAGATCTACGACGGAGCCAGAGCCGAATTTCCTCTCACATTCGGTAAGCAATCCAAATCTCAAACCCCTCTCGAAGCCATCCACAATACGACCCGTCGTAACCAGAACCTTCAACAACAGCAACGACAACCACCACCCTCCTCCGCCGACCTCCCTTCTCTCTCCTCCTCCTCCAAAACCTGGCTCAATTCCCTCCGTACCGCCAAAACCCCCAACCCTAACCCTAGCGATTCTGACGCAACCCTTATCGGACCGCCTCGTCCACCGCAGCCTAATTCGGCCTCCGACGACGACGGCGATGCCCTTATCGGACCGCCGCCGCCGCCCGGGAGTGGCGAGAGCGACGACGATGGTGAGATGATTGGACCGCCGGCGCCGGCGAGGTCCAATAGAGACGATTGGGATTCCGATGCGGAAGAGGAGAACAAGTACCGGATTCCGGTGAGCAATGAGATTGTGCTGAAGGGACACACCAAGGTGGTTTCGGCCCTGGCCATTGATCACACTGGGTCTAGAGTTATATCTGGTAGCTATGACTACTCTGTGAGAATGTACGATTTTCAAGGAATGAATGCAAAGTTGCAATCTTTCCGGCAACTGGAGCCGTCTGAAGGTCATCAAGTGAGAACTATAAGCTGGAGCCCCACCGCCGACCGGTTTCTGTGTGTCACCGGCTCAGCTCAGGCAAAGATTTATGATCGTGACGGACTTACGCTAGGAGAGTTTGTCAAAGGGGATATGTATATTCGTGATCTTAAGAATACCAAGGGCCATATTACAGGATTGACCTGTGGACAGTGGCACCCTAGAAAGAAAGACGAAATCTTGACATCATCGGAGGATGGGTCACTGCGCATTTGGGATGTCAATAACTTCAACACTCAGAAACAGGTAATCAAGCCAAAACTTGCTAGGCCTGGAAGAGTTCCAGTCACCACTTGTACTTGGGATCATGAAGGACAACGGATTGCAGGTGGTATAGGAGATGGTTCTATACAGGTTTGGAACATTAAGCCCGGATGGGGAAGTAGGCCGGACATACATGTTCAGGAAGCTCATTCAGATGATATTACCGGGCTTAAGTTTTCTAGGGATGGGAGAATCTTACTCTCAAGAAGCTGTGATGGCACTTTGAAGGTTTGGGACTTACGTCAGATGAAAGATCCTCTCAAGGTGTTTCAGGATCTCCCAAATAACTATGCACAAACCAATGTCGCATTTAGTCCTGATGAGCAACTCTTTCTGACTGGAACCTCGATTGAAAGGGAGAGCACAACTGGAGGTTTACTATGCTTCTTTGATCGAGCAAAACTGGAACTTGTTTCAAAAGTTGGGATATCCCCTACTTGTAGTGTTGTGCAATGTGCCTGGCACCCAAAACTGAATCAGATCTTTGCAACATCAGGAGATAAAAGCCAAGGCGGAACTCATGTACTCTATGATCCCACTATTAGTGAAAGAGGAGCTCTTGTCTGCGTTGCACGTGCCCCTAGGAAACAATCTGTTGATGATTTTGTGGCAAACCCAGTCATACACAACCCTCATGCTCTACCCTTATTTAGAGATCAACCAAGCCGTAAACGTGAGCGAGAGAAAACATTGAAGGATCCAGTTAAATCCCATAAGCCTGACCTTCCCATGACAGGACCAGGCTTTGGTGGAAGAGTTGGTGCAAGTAAAGGAAGCTTATTGACCCAGTACCTTATGAAGCAAGGTGGTATGATCAAGGAGACGTGGATGGACGAAGATCCAAGAGAAGCCATACTGAAGTATGCAGATGTTGCAGCAAAAGATCCAAAGTACATAGCTCCAGCTTATGCAGAAACCCAGCCTGAAACAGTTTTTGCGAAATCAGACTCTGAGGACGAGGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

631

Amino Acids

69.57

Weight (kDa)

6.11

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 155 - 241 1.2e-06 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 157 - 234 2e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 159 - 239 5.5e-06 WDR5 beta-propeller domain
WD40_Prp19 PF24814 160 - 295 5e-07 Prp19 WD40 domain
Beta-prop_EML PF23409 162 - 425 4.7e-09 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 163 - 238 5.6e-06 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 204 - 343 7.9e-06 Aladin seven-bladed propeller
Beta-prop_THOC3 PF25174 212 - 303 2.5e-07 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 255 - 344 6.8e-07 TEP-1 second beta-propeller
WD40_Gbeta PF25391 256 - 421 2.4e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 259 - 424 7e-22 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 261 - 422 1e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 262 - 425 1.3e-16 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 268 - 478 4.4e-14 CDC20/Fizzy WD40 domain
Beta-prop_Aladin PF25460 268 - 393 4.6e-08 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 274 - 417 2.3e-11 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 277 - 389 2.7e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 278 - 394 4.7e-08 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 279 - 422 1.5e-07 WDR36/Utp21 first beta-propeller
WDR55 PF24796 280 - 392 8.2e-07 WDR55
WDR90_beta-prop_4th PF23342 280 - 386 4.5e-06 WDR90, 4th beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 281 - 424 1.7e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 283 - 393 7.5e-11 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 315 - 405 5.6e-09 WDHD1 first WD40 domain
EIF3I PF24805 316 - 407 6.6e-06 EIF3I
Beta-prop_THOC3 PF25174 317 - 478 1.4e-15 THOC3 beta-propeller domain
WD40 PF00400 353 - 388 2.1e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 980
AasI GACNNNNNNGTC 1 cut(s) 276
Acc16I TGCGCA 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 980
AccB1I GGYRCC 3 cut(s) 391, 819, 1389
AccB7I CCANNNNNTGG 2 cut(s) 198, 1673
AccII CGCG 1 cut(s) 14
AclWI GGATC 8 cut(s) 975, 1175, 1209, 1454, 1619, 1632, 1760, 1805
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 3 cut(s) 500, 648, 1805
AcvI CACGTG 1 cut(s) 1502
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 7 cut(s) 217, 449, 572, 961, 1452, 1718, 1820
AflII CTTAAG 2 cut(s) 773, 1097
AflIII ACRYGT 1 cut(s) 1060
AgeI ACCGGT 1 cut(s) 672
AgsI TTSAA 7 cut(s) 131, 581, 895, 1153, 1280, 1344, 1621
AjiI CACGTC 1 cut(s) 1752
AjnI CCWGG 5 cut(s) 197, 507, 934, 1385, 1666
AleI CACNNNNGTG 1 cut(s) 494
AluBI AGCT 9 cut(s) 549, 654, 698, 1073, 1137, 1484, 1704, 1826, 1832
AluI AGCT 9 cut(s) 549, 654, 698, 1073, 1137, 1484, 1704, 1826, 1832
Alw21I GWGCWC 2 cut(s) 1292, 1486
Alw26I GTCTC 2 cut(s) 405, 1742
AlwI GGATC 8 cut(s) 975, 1175, 1209, 1454, 1619, 1632, 1760, 1805
AlwNI CAGNNNCTG 1 cut(s) 1877
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 6 cut(s) 297, 504, 510, 787, 932, 1049
ApeKI GCWGC 2 cut(s) 286, 1802
ApoI RAATTY 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 672
AspA2I CCTAGG 1 cut(s) 1508
AspLEI GCGC 2 cut(s) 394, 873
AspS9I GGNCC 7 cut(s) 269, 329, 383, 402, 505, 787, 1664
AsuC2I CCSGG 4 cut(s) 345, 346, 1035, 1093
AsuHPI GGTGA 4 cut(s) 383, 472, 679, 943
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 5 cut(s) 269, 329, 383, 402, 1664
AvrII CCTAGG 1 cut(s) 1508
BaeGI GKGCMC 1 cut(s) 1507
BalI TGGCCA 1 cut(s) 512
BamHI GGATCC 1 cut(s) 1624
BanI GGYRCC 3 cut(s) 391, 819, 1389
BanII GRGCYC 2 cut(s) 662, 1486
BbrPI CACGTG 1 cut(s) 1502
Bbv12I GWGCWC 2 cut(s) 1292, 1486
BbvI GCAGC 2 cut(s) 298, 1814
BccI CCATC 8 cut(s) 104, 362, 854, 998, 1032, 1106, 1136, 1750
BceAI ACGGC 3 cut(s) 328, 607, 1578
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 5 cut(s) 199, 509, 936, 1387, 1668
BclI TGATCA 2 cut(s) 517, 1740
BcnI CCSGG 4 cut(s) 345, 346, 1035, 1093
BcoDI GTCTC 2 cut(s) 405, 1742
BfaI CTAG 7 cut(s) 243, 531, 734, 825, 930, 1107, 1509
BfoI RGCGCY 1 cut(s) 395
BfrI CTTAAG 2 cut(s) 773, 1097
BfuAI ACCTGC 1 cut(s) 980
BglII AGATCT 2 cut(s) 21, 1407
BisI GCNGC 6 cut(s) 15, 287, 335, 338, 341, 1803
BlnI CCTAGG 1 cut(s) 1508
BlpI GCTNAGC 1 cut(s) 694
BlsI GCNGC 6 cut(s) 16, 288, 336, 339, 342, 1804
Bme1390I CCNGG 9 cut(s) 199, 345, 346, 509, 936, 1035, 1093, 1387, 1668
Bme18I GGWCC 5 cut(s) 269, 329, 383, 402, 1664
BmeT110I CYCGRG 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 1752
BmgT120I GGNCC 7 cut(s) 269, 329, 383, 402, 505, 787, 1664
BmiI GGNNCC 8 cut(s) 34, 393, 621, 659, 821, 1270, 1391, 1626
BmrFI CCNGG 9 cut(s) 199, 345, 346, 509, 936, 1035, 1093, 1387, 1668
BmrI ACTGGG 3 cut(s) 534, 1538, 1708
BmsI GCATC 2 cut(s) 307, 418
BmuI ACTGGG 3 cut(s) 534, 1538, 1708
BoxI GACNNNNGTC 1 cut(s) 1167
BpmI CTGGAG 4 cut(s) 638, 676, 1317, 1812
Bpu10I CCTNAGC 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 694
BpuEI CTTGAG 2 cut(s) 1114, 1172
BpuMI CCSGG 4 cut(s) 345, 346, 1035, 1093
BsaAI YACGTR 1 cut(s) 1502
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 6 cut(s) 344, 492, 507, 783, 1435, 1508
BsaWI WCCGGW 3 cut(s) 450, 457, 672
BsaXI ACNNNNNCTCC 8 cut(s) 431, 461, 729, 759, 848, 878, 1473, 1503
Bse118I RCCGGY 4 cut(s) 388, 394, 672, 689
Bse1I ACTGG 9 cut(s) 529, 621, 947, 1270, 1300, 1335, 1544, 1628, 1714
Bse3DI GCAATG 2 cut(s) 472, 1385
BseBI CCWGG 5 cut(s) 199, 509, 936, 1387, 1668
BseDI CCNNGG 6 cut(s) 344, 492, 507, 783, 1435, 1508
BseGI GGATG 7 cut(s) 13, 96, 865, 886, 1043, 1117, 1761
BseMI GCAATG 2 cut(s) 472, 1385
BseMII CTCAG 4 cut(s) 708, 713, 914, 1869
BseNI ACTGG 9 cut(s) 529, 621, 947, 1270, 1300, 1335, 1544, 1628, 1714
BseRI GAGGAG 6 cut(s) 148, 172, 175, 178, 452, 1494
BseSI GKGCMC 1 cut(s) 1507
BseXI GCAGC 2 cut(s) 298, 1814
BseYI CCCAGC 1 cut(s) 1845
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 6 cut(s) 299, 506, 512, 789, 934, 1051
BshNI GGYRCC 3 cut(s) 391, 819, 1389
BshTI ACCGGT 1 cut(s) 672
BsiEI CGRYCG 1 cut(s) 673
BsiHKAI GWGCWC 2 cut(s) 1292, 1486
BsiHKCI CYCGRG 1 cut(s) 344
BslFI GGGAC 2 cut(s) 498, 1175
BsmAI GTCTC 2 cut(s) 405, 1742
BsmBI CGTCTC 2 cut(s) 405, 1742
BsmFI GGGAC 2 cut(s) 498, 1175
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 6 cut(s) 299, 506, 512, 789, 934, 1051
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 4 cut(s) 662, 1292, 1486, 1507
Bsp1720I GCTNAGC 1 cut(s) 694
BspANI GGCC 6 cut(s) 299, 506, 512, 789, 934, 1051
BspCNI CTCAG 4 cut(s) 707, 712, 913, 1870
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 970
BspLI GGNNCC 8 cut(s) 34, 393, 621, 659, 821, 1270, 1391, 1626
BspMI ACCTGC 1 cut(s) 980
BspPI GGATC 8 cut(s) 975, 1175, 1209, 1454, 1619, 1632, 1760, 1805
BspT107I GGYRCC 3 cut(s) 391, 819, 1389
BspTI CTTAAG 2 cut(s) 773, 1097
BsrDI GCAATG 2 cut(s) 472, 1385
BsrFI RCCGGY 4 cut(s) 388, 394, 672, 689
BsrI ACTGG 9 cut(s) 529, 621, 947, 1270, 1300, 1335, 1544, 1628, 1714
BssAI RCCGGY 4 cut(s) 388, 394, 672, 689
BssECI CCNNGG 6 cut(s) 344, 492, 507, 783, 1435, 1508
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 4 cut(s) 492, 783, 1435, 1508
Bst2UI CCWGG 5 cut(s) 199, 509, 936, 1387, 1668
Bst4CI ACNGT 2 cut(s) 816, 1858
Bst6I CTCTTC 3 cut(s) 429, 934, 1675
BstACI GRCGYC 1 cut(s) 392
BstAFI CTTAAG 2 cut(s) 773, 1097
BstAPI GCANNNNNTGC 1 cut(s) 1799
BstBAI YACGTR 1 cut(s) 1502
BstC8I GCNNGC 2 cut(s) 390, 396
BstDEI CTNAG 4 cut(s) 694, 699, 900, 1878
BstF5I GGATG 7 cut(s) 13, 96, 865, 886, 1043, 1117, 1761
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 2 cut(s) 394, 873
BstMAI GTCTC 2 cut(s) 405, 1742
BstMCI CGRYCG 1 cut(s) 673
BstMWI GCNNNNNNNGC 5 cut(s) 11, 340, 619, 1143, 1799
BstNI CCWGG 5 cut(s) 199, 509, 936, 1387, 1668
BstNSI RCATGY 1 cut(s) 1064
BstPAI GACNNNNGTC 1 cut(s) 1167
BstSCI CCNGG 9 cut(s) 197, 343, 344, 507, 934, 1033, 1091, 1385, 1666
BstSLI GKGCMC 1 cut(s) 1507
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 298, 1814
BstX2I RGATCY 7 cut(s) 21, 1180, 1201, 1407, 1624, 1765, 1810
BstYI RGATCY 7 cut(s) 21, 1180, 1201, 1407, 1624, 1765, 1810
BsuRI GGCC 6 cut(s) 299, 506, 512, 789, 934, 1051
BtgZI GCGATG 1 cut(s) 330
BtrI CACGTC 1 cut(s) 1752
BtsCI GGATG 7 cut(s) 13, 96, 865, 886, 1043, 1117, 1761
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 3 cut(s) 522, 821, 866
BveI ACCTGC 1 cut(s) 980
Cac8I GCNNGC 2 cut(s) 390, 396
CaiI CAGNNNCTG 1 cut(s) 1877
CciI TCATGA 1 cut(s) 970
CfoI GCGC 2 cut(s) 394, 873
Cfr10I RCCGGY 4 cut(s) 388, 394, 672, 689
Cfr13I GGNCC 7 cut(s) 269, 329, 383, 402, 505, 787, 1664
Cfr9I CCCGGG 1 cut(s) 344
CpoI CGGWCCG 2 cut(s) 269, 329
CseI GACGC 2 cut(s) 20, 263
Csp6I GTAC 7 cut(s) 216, 448, 571, 960, 1451, 1717, 1819
CspAI ACCGGT 1 cut(s) 672
CspI CGGWCCG 2 cut(s) 269, 329
CviAII CATG 5 cut(s) 971, 1061, 1448, 1562, 1657
CviQI GTAC 7 cut(s) 216, 448, 571, 960, 1451, 1717, 1819
DdeI CTNAG 4 cut(s) 694, 699, 900, 1878
DinI GGCGCC 1 cut(s) 393
DrdI GACNNNNNNGTC 1 cut(s) 276
DseDI GACNNNNNNGTC 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 3 cut(s) 429, 934, 1675
EarI CTCTTC 3 cut(s) 429, 934, 1675
EciI GGCGGA 4 cut(s) 20, 32, 151, 1455
Ecl136II GAGCTC 1 cut(s) 1484
Eco130I CCWWGG 4 cut(s) 492, 783, 1435, 1508
Eco147I AGGCCT 1 cut(s) 934
Eco24I GRGCYC 2 cut(s) 662, 1486
Eco32I GATATC 1 cut(s) 1356
Eco47I GGWCC 5 cut(s) 269, 329, 383, 402, 1664
Eco53kI GAGCTC 1 cut(s) 1484
Eco57I CTGAAG 3 cut(s) 500, 648, 1805
Eco72I CACGTG 1 cut(s) 1502
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 1484
EcoRII CCWGG 5 cut(s) 197, 507, 934, 1385, 1666
EcoRV GATATC 1 cut(s) 1356
EcoT14I CCWWGG 4 cut(s) 492, 783, 1435, 1508
EcoT38I GRGCYC 2 cut(s) 662, 1486
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
ErhI CCWWGG 4 cut(s) 492, 783, 1435, 1508
Esp3I CGTCTC 2 cut(s) 405, 1742
FaeI CATG 5 cut(s) 974, 1064, 1451, 1565, 1660
FaqI GGGAC 2 cut(s) 498, 1175
FatI CATG 5 cut(s) 970, 1060, 1447, 1561, 1656
FbaI TGATCA 2 cut(s) 517, 1740
Fnu4HI GCNGC 6 cut(s) 15, 287, 335, 338, 341, 1803
FokI GGATG 7 cut(s) 20, 83, 872, 893, 1050, 1124, 1768
FriOI GRGCYC 2 cut(s) 662, 1486
Fsp4HI GCNGC 6 cut(s) 15, 287, 335, 338, 341, 1803
FspBI CTAG 7 cut(s) 243, 531, 734, 825, 930, 1107, 1509
FspI TGCGCA 1 cut(s) 872
GlaI GCGC 2 cut(s) 393, 872
GluI GCNGC 6 cut(s) 15, 287, 335, 338, 341, 1803
GsaI CCCAGC 1 cut(s) 1849
GsuI CTGGAG 4 cut(s) 638, 676, 1317, 1812
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 6 cut(s) 299, 506, 512, 789, 934, 1051
HgaI GACGC 2 cut(s) 20, 263
HhaI GCGC 2 cut(s) 394, 873
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 5 cut(s) 974, 1064, 1451, 1565, 1660
Hin6I GCGC 2 cut(s) 392, 871
HinP1I GCGC 2 cut(s) 392, 871
HindIII AAGCTT 1 cut(s) 1702
HinfI GANTC 6 cut(s) 248, 422, 454, 1119, 1402, 1874
HphI GGTGA 4 cut(s) 383, 472, 679, 943
Hpy166II GTNNAC 4 cut(s) 281, 812, 1304, 1598
Hpy8I GTNNAC 4 cut(s) 281, 812, 1304, 1598
Hpy99I CGWCG 7 cut(s) 32, 117, 308, 311, 314, 365, 368
HpyAV CCTTC 8 cut(s) 137, 183, 475, 623, 968, 1147, 1615, 1661
HpyCH4III ACNGT 2 cut(s) 816, 1858
HpyCH4IV ACGT 4 cut(s) 1168, 1501, 1600, 1751
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 340, 619, 1143, 1799
HpyF3I CTNAG 4 cut(s) 694, 699, 900, 1878
HpySE526I ACGT 4 cut(s) 1168, 1501, 1600, 1751
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 5 cut(s) 974, 1064, 1451, 1565, 1660
HspAI GCGC 2 cut(s) 392, 871
KasI GGCGCC 1 cut(s) 391
KroI GCCGGC 2 cut(s) 388, 394
KroNI GCCGGC 2 cut(s) 390, 396
Ksp22I TGATCA 2 cut(s) 517, 1740
LmnI GCTCC 5 cut(s) 32, 619, 657, 1481, 1831
Lsp1109I GCAGC 2 cut(s) 298, 1814
LweI GCATC 2 cut(s) 307, 418
MaeI CTAG 7 cut(s) 243, 531, 734, 825, 930, 1107, 1509
MaeII ACGT 4 cut(s) 1168, 1501, 1600, 1751
MaeIII GTNAC 5 cut(s) 116, 685, 719, 864, 949
MboII GAAGA 4 cut(s) 446, 951, 1692, 1775
MflI RGATCY 7 cut(s) 21, 1180, 1201, 1407, 1624, 1765, 1810
MhlI GDGCHC 4 cut(s) 662, 1292, 1486, 1507
MlsI TGGCCA 1 cut(s) 512
MluCI AATT 3 cut(s) 44, 205, 292
MluNI TGGCCA 1 cut(s) 512
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 1 cut(s) 1868
MmeI TCCRAC 1 cut(s) 327
Mox20I TGGCCA 1 cut(s) 512
MreI CGCCGGCG 2 cut(s) 388, 394
MroNI GCCGGC 2 cut(s) 388, 394
MscI TGGCCA 1 cut(s) 512
MseI TTAA 4 cut(s) 774, 1029, 1098, 1632
MslI CAYNNNNRTG 2 cut(s) 494, 1080
Msp20I TGGCCA 1 cut(s) 512
MspCI CTTAAG 2 cut(s) 773, 1097
MspR9I CCNGG 9 cut(s) 199, 345, 346, 509, 936, 1035, 1093, 1387, 1668
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 5 cut(s) 199, 509, 936, 1387, 1668
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 5 cut(s) 11, 340, 619, 1143, 1799
NaeI GCCGGC 2 cut(s) 390, 396
NarI GGCGCC 1 cut(s) 392
NciI CCSGG 4 cut(s) 345, 346, 1035, 1093
NgoMIV GCCGGC 2 cut(s) 388, 394
NlaIII CATG 5 cut(s) 974, 1064, 1451, 1565, 1660
NlaIV GGNNCC 8 cut(s) 34, 393, 621, 659, 821, 1270, 1391, 1626
NmuCI GTSAC 4 cut(s) 685, 719, 864, 949
NsbI TGCGCA 1 cut(s) 872
NspI RCATGY 1 cut(s) 1064
OliI CACNNNNGTG 1 cut(s) 494
PagI TCATGA 1 cut(s) 970
PaqCI CACCTGC 1 cut(s) 980
PceI AGGCCT 1 cut(s) 934
PciI ACATGT 1 cut(s) 1060
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 595
PdiI GCCGGC 2 cut(s) 390, 396
PfeI GAWTC 5 cut(s) 248, 422, 454, 1119, 1402
PflMI CCANNNNNTGG 2 cut(s) 198, 1673
PinAI ACCGGT 1 cut(s) 672
PkrI GCNGC 6 cut(s) 16, 288, 336, 339, 342, 1804
PleI GAGTC 1 cut(s) 1868
PluTI GGCGCC 1 cut(s) 395
PmaCI CACGTG 1 cut(s) 1502
PmlI CACGTG 1 cut(s) 1502
PpsI GAGTC 1 cut(s) 1868
Ppu21I YACGTR 1 cut(s) 1502
PscI ACATGT 1 cut(s) 1060
PshAI GACNNNNGTC 1 cut(s) 1167
Psp124BI GAGCTC 1 cut(s) 1486
Psp6I CCWGG 5 cut(s) 197, 507, 934, 1385, 1666
PspCI CACGTG 1 cut(s) 1502
PspFI CCCAGC 1 cut(s) 1845
PspGI CCWGG 5 cut(s) 197, 507, 934, 1385, 1666
PspN4I GGNNCC 8 cut(s) 34, 393, 621, 659, 821, 1270, 1391, 1626
PspPI GGNCC 7 cut(s) 269, 329, 383, 402, 505, 787, 1664
PstNI CAGNNNCTG 1 cut(s) 1877
PsuI RGATCY 7 cut(s) 21, 1180, 1201, 1407, 1624, 1765, 1810
RsaI GTAC 7 cut(s) 217, 449, 572, 961, 1452, 1718, 1820
RsaNI GTAC 7 cut(s) 216, 448, 571, 960, 1451, 1717, 1819
RseI CAYNNNNRTG 2 cut(s) 494, 1080
Rsr2I CGGWCCG 2 cut(s) 269, 329
RsrII CGGWCCG 2 cut(s) 269, 329
SacI GAGCTC 1 cut(s) 1486
SaqAI TTAA 4 cut(s) 774, 1029, 1098, 1632
SatI GCNGC 6 cut(s) 15, 287, 335, 338, 341, 1803
Sau96I GGNCC 7 cut(s) 269, 329, 383, 402, 505, 787, 1664
SchI GAGTC 1 cut(s) 1868
ScrFI CCNGG 9 cut(s) 199, 345, 346, 509, 936, 1035, 1093, 1387, 1668
SduI GDGCHC 4 cut(s) 662, 1292, 1486, 1507
SfaNI GCATC 2 cut(s) 307, 418
SfoI GGCGCC 1 cut(s) 393
SgrAI CRCCGGYG 2 cut(s) 388, 394
SinI GGWCC 5 cut(s) 269, 329, 383, 402, 1664
SmaI CCCGGG 1 cut(s) 346
SmiMI CAYNNNNRTG 2 cut(s) 494, 1080
SmlI CTYRAG 4 cut(s) 773, 1097, 1129, 1187
SmoI CTYRAG 4 cut(s) 773, 1097, 1129, 1187
Sse9I AATT 3 cut(s) 44, 205, 292
SseBI AGGCCT 1 cut(s) 934
SspDI GGCGCC 1 cut(s) 391
SspMI CTAG 7 cut(s) 243, 531, 734, 825, 930, 1107, 1509
SstI GAGCTC 1 cut(s) 1486
StuI AGGCCT 1 cut(s) 934
StyD4I CCNGG 9 cut(s) 197, 343, 344, 507, 934, 1033, 1091, 1385, 1666
StyI CCWWGG 4 cut(s) 492, 783, 1435, 1508
TaaI ACNGT 2 cut(s) 816, 1858
TaiI ACGT 4 cut(s) 1171, 1504, 1603, 1754
TaqI TCGA 3 cut(s) 90, 1274, 1321
TasI AATT 3 cut(s) 44, 205, 292
TatI WGTACW 3 cut(s) 959, 1450, 1818
TauI GCSGC 4 cut(s) 17, 337, 340, 343
TfiI GAWTC 5 cut(s) 248, 422, 454, 1119, 1402
Tru1I TTAA 4 cut(s) 774, 1029, 1098, 1632
Tru9I TTAA 4 cut(s) 774, 1029, 1098, 1632
TscAI CASTG 3 cut(s) 529, 821, 873
TseFI GTSAC 4 cut(s) 685, 719, 864, 949
TseI GCWGC 2 cut(s) 286, 1802
Tsp45I GTSAC 4 cut(s) 685, 719, 864, 949
TspDTI ATGAA 4 cut(s) 602, 987, 1190, 1739
TspGWI ACGGA 4 cut(s) 45, 203, 738, 997
TspMI CCCGGG 1 cut(s) 344
TspRI CASTG 3 cut(s) 529, 821, 873
Van91I CCANNNNNTGG 2 cut(s) 198, 1673
Vha464I CTTAAG 2 cut(s) 773, 1097
VpaK11BI GGWCC 5 cut(s) 269, 329, 383, 402, 1664
XapI RAATTY 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 530
XceI RCATGY 1 cut(s) 1064
XmaI CCCGGG 1 cut(s) 344
XmaJI CCTAGG 1 cut(s) 1508
XspI CTAG 7 cut(s) 243, 531, 734, 825, 930, 1107, 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.