RchiOBHm_Chr6g0286091

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011288
Physical Location & Seq
Reverse (-)
49380601 .. 49383922
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25663

Sequence Viewer

Length: 1905 bp
ATGGCGGACGACGCAGCGGAGATCTACGACGGAGCCAGAGCCGAATTTCCTCTCACATTCGGTAAGCAATCCAAATCTCAAACCCCTCTCGAAGCCATCCACAATACGACCCGTCGTAACCAGAACCTTCAACAACAGCAACGACAACCACCACCCTCCTCCGCCGACCTCCCTTCTCTCTCCTCCTCCTCCTCCAAAACCTGGCTCAATTCCCTCCGTACCGCCAAAACCCCCAACCCTAACCCTAACCCTAGCGATTCGGATGCAACCCTTATCGGACCGCCTCGTCCACCGCAGCCTGATTCGGCCTCCGACGACGACGGCGATGCCCTCATCGGACCGCCGCCGCCTCCCGGGAGTGCCGAGAGCGACGACGATGGTGAGATGATTGGACCGCCGGCGCCGGGGAGGTCCAATAGAGACGATTGGGATTCCGATGCGGAAGAGGAGAACAAGTACCGGATTCCGGTGAGCAATGAGATTGTGCTGAAGGGACACACCAAGGTGGTTTCGGCCCTCGCCATTGATCACACTGGTTCTAGAGTTATATCTGGTAGCTATGACTATTCTGTGAGAATGTACGATTTTCAAGGAATGAATGCAAAGTTGCAATCTTTCCGGCAGCTGGAGCCGTCTGAAGGTCATCAGGTCAGAACTATAAGCTGGAGCCCCACCGGCGACCGGTTTCTGTGTGTCACCGGCTCAGCTCAGGCAAAGATTTATGATCGTGACGGACTTACGCTAGGAGAGTTTGTAAAAGGGGACATGTATATTCGTGATCTTAAGAATACCAAGGGGCATATTACTGGATTGACCTGTGGACAGTGGCACCCTAGAAAGAAAGACGAAATCTTGACATCATCGGAGGATGGGTCACTGCGCATTTGGGATGTTAATAACTTCAATACTCAGAAACAGGTAATCAAGCCAAAACTTGCTAGGCCTGGAAGAGTTCCAGTCACCACTTGTACTTGGGATCATGAAGGACAACGGATTGCAGGTGGTATAGGAGATGGTTCTATACAAGTTTGGAACATTAAGCCCGGATGGGGAAGTAGGCCGGACATACACGTTCAGGAAGCTCATTCAGATGATATTACTGGGCTTAAGTTTTCTAGGGATGGAAGAATCTTACTCTCAAGAAGCTGTGATGGCACTTTGAAGGTTTGGGACTTACGTCAGATGAAAGATCCTCTGAAGGTGTTTCAGGATCTCCCAAATAACTATGCACAAACCAATGTCGCATTTAGTCCTGATGAGCAACTCTTTCTGACTGGAACCTCAATTGAAAGGGAGAGCACAACTGGAGGTTTACTATGCTTCTTTGATCGAGCAAAACTGGAACTTGTTTCTAAAGTTGGGATATCCGCTACTTGTAGTGTTGTGCAATGTGCCTGGCACCCAAAATTGAATCAGATCTTTGCAACATCAGGAGATAAAAGCCAAGGCGGAACTCATGTACTATATGATCCAACTCTTAGTGAAAGAGGAGCTCTTGTCTGTGTTGCACGTGCCCCTAGGAAAAAATCTGTTGATGATTTTGTGGCAAACCCAGTCATACACAACCCTCATGCTCTACCCTTATTTAGAGATCAACCAAGCCGTAAACGTGAGCGAGAGAAAACATTGAAGGATCCAGTTAAATCCCATAAGCCTGACCTTCCCATGACAGGACCAGGCTTTGGTGGAAGAGTTGGTGCAAGTAAAGGAAGCTTATTGACCCAGTACCTAATGAAGCAAGGTGGTATGATCAAGGAGACGTGGATGGACGAAGATCCAAGAGAAGCCATACTGAAGTATGCAGATGTTGCAGCAAAAGATCCAAAGTACATAGCTCCAGCTTATGCAGAAACCCAGCCTGAAACAGTTTTTGCGAAATCAGACTCTGAGGACGAGGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

634

Amino Acids

69.83

Weight (kDa)

6.11

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 158 - 244 2.3e-06 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 160 - 237 4.2e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 162 - 242 1.4e-06 WDR5 beta-propeller domain
Beta-prop_EML PF23409 165 - 428 4.7e-09 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 166 - 227 5.2e-06 THOC3 beta-propeller domain
Beta-prop_THOC3 PF25174 215 - 306 1.8e-08 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 257 - 347 5.5e-07 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 262 - 427 7e-22 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 264 - 425 9.3e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 265 - 428 1.3e-16 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 269 - 426 1.3e-15 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 271 - 482 1.6e-14 CDC20/Fizzy WD40 domain
Beta-prop_Aladin PF25460 271 - 396 5.1e-08 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 277 - 421 2.1e-11 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 280 - 392 2.7e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 281 - 425 7.2e-08 WDR36/Utp21 first beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 281 - 397 5.4e-08 WDR90/POC16, second beta-propeller
WDR90_beta-prop_4th PF23342 283 - 389 4.5e-06 WDR90, 4th beta-propeller
WDR55 PF24796 283 - 395 9e-07 WDR55
Beta-prop_CAF1B_HIR1 PF24105 284 - 427 1.9e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 285 - 397 4.6e-11 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 318 - 408 5.7e-09 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 320 - 481 1e-15 THOC3 beta-propeller domain
EIF3I PF24805 320 - 410 9.6e-06 EIF3I
WD40 PF00400 356 - 391 2.1e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 989
AasI GACNNNNNNGTC 1 cut(s) 285
Acc16I TGCGCA 1 cut(s) 881
Acc36I ACCTGC 1 cut(s) 989
AccB1I GGYRCC 3 cut(s) 400, 828, 1398
AccB7I CCANNNNNTGG 2 cut(s) 201, 1682
AclWI GGATC 8 cut(s) 984, 1184, 1218, 1463, 1628, 1641, 1769, 1814
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 4 cut(s) 509, 657, 1217, 1814
AcvI CACGTG 1 cut(s) 1511
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 7 cut(s) 220, 458, 581, 970, 1461, 1727, 1829
AflII CTTAAG 2 cut(s) 782, 1106
AflIII ACRYGT 2 cut(s) 765, 1069
AgeI ACCGGT 1 cut(s) 681
AgsI TTSAA 7 cut(s) 131, 590, 904, 1162, 1289, 1411, 1630
AjiI CACGTC 1 cut(s) 1761
AjnI CCWGG 4 cut(s) 200, 943, 1394, 1675
AleI CACNNNNGTG 1 cut(s) 503
Alw21I GWGCWC 2 cut(s) 1301, 1495
Alw26I GTCTC 2 cut(s) 414, 1751
AlwI GGATC 8 cut(s) 984, 1184, 1218, 1463, 1628, 1641, 1769, 1814
AlwNI CAGNNNCTG 1 cut(s) 1886
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 4 cut(s) 306, 513, 941, 1058
ApeKI GCWGC 4 cut(s) 14, 295, 622, 1811
ApoI RAATTY 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 681
AspA2I CCTAGG 1 cut(s) 1517
AspLEI GCGC 2 cut(s) 403, 882
AspS9I GGNCC 6 cut(s) 278, 338, 392, 411, 514, 1673
AsuC2I CCSGG 4 cut(s) 354, 355, 405, 1044
AsuHPI GGTGA 4 cut(s) 392, 481, 688, 952
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 5 cut(s) 278, 338, 392, 411, 1673
AvrII CCTAGG 1 cut(s) 1517
BaeGI GKGCMC 1 cut(s) 1516
BamHI GGATCC 1 cut(s) 1633
BanI GGYRCC 3 cut(s) 400, 828, 1398
BanII GRGCYC 2 cut(s) 671, 1495
BbrPI CACGTG 1 cut(s) 1511
Bbv12I GWGCWC 2 cut(s) 1301, 1495
BbvI GCAGC 4 cut(s) 26, 307, 634, 1823
BccI CCATC 8 cut(s) 104, 371, 863, 1007, 1041, 1115, 1145, 1759
BceAI ACGGC 3 cut(s) 337, 616, 1587
BcgI CGANNNNNNTGC 4 cut(s) 245, 279, 308, 342
BciT130I CCWGG 4 cut(s) 202, 945, 1396, 1677
BclI TGATCA 2 cut(s) 526, 1749
BcnI CCSGG 4 cut(s) 354, 355, 405, 1044
BcoDI GTCTC 2 cut(s) 414, 1751
BfaI CTAG 7 cut(s) 252, 540, 743, 834, 939, 1116, 1518
BfoI RGCGCY 1 cut(s) 404
BfrI CTTAAG 2 cut(s) 782, 1106
BfuAI ACCTGC 1 cut(s) 989
BglI GCCNNNNNGGC 1 cut(s) 675
BglII AGATCT 2 cut(s) 21, 1416
BisI GCNGC 6 cut(s) 15, 296, 344, 347, 623, 1812
BlnI CCTAGG 1 cut(s) 1517
BlpI GCTNAGC 1 cut(s) 703
BlsI GCNGC 6 cut(s) 16, 297, 345, 348, 624, 1813
Bme1390I CCNGG 8 cut(s) 202, 354, 355, 405, 945, 1044, 1396, 1677
Bme18I GGWCC 5 cut(s) 278, 338, 392, 411, 1673
BmeT110I CYCGRG 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 1761
BmgT120I GGNCC 6 cut(s) 278, 338, 392, 411, 514, 1673
BmiI GGNNCC 8 cut(s) 34, 402, 630, 668, 830, 1279, 1400, 1635
BmrFI CCNGG 8 cut(s) 202, 354, 355, 405, 945, 1044, 1396, 1677
BmrI ACTGGG 3 cut(s) 1110, 1547, 1717
BmsI GCATC 3 cut(s) 253, 316, 427
BmuI ACTGGG 3 cut(s) 1110, 1547, 1717
BoxI GACNNNNGTC 1 cut(s) 1176
BpmI CTGGAG 4 cut(s) 647, 685, 1326, 1821
Bpu10I CCTNAGC 1 cut(s) 708
Bpu1102I GCTNAGC 1 cut(s) 703
BpuEI CTTGAG 1 cut(s) 1123
BpuMI CCSGG 4 cut(s) 354, 355, 405, 1044
BsaAI YACGTR 1 cut(s) 1511
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 6 cut(s) 353, 404, 501, 792, 1444, 1517
BsaWI WCCGGW 3 cut(s) 459, 466, 681
BsaXI ACNNNNNCTCC 8 cut(s) 440, 470, 738, 768, 857, 887, 1482, 1512
Bse118I RCCGGY 4 cut(s) 397, 674, 681, 698
Bse3DI GCAATG 2 cut(s) 481, 1394
BseBI CCWGG 4 cut(s) 202, 945, 1396, 1677
BseDI CCNNGG 6 cut(s) 353, 404, 501, 792, 1444, 1517
BseGI GGATG 7 cut(s) 96, 268, 874, 895, 1052, 1126, 1770
BseMI GCAATG 2 cut(s) 481, 1394
BseMII CTCAG 4 cut(s) 717, 722, 923, 1878
BseRI GAGGAG 7 cut(s) 148, 172, 175, 178, 181, 461, 1503
BseSI GKGCMC 1 cut(s) 1516
BseXI GCAGC 4 cut(s) 26, 307, 634, 1823
BseYI CCCAGC 1 cut(s) 1854
Bsh1285I CGRYCG 1 cut(s) 682
BshFI GGCC 4 cut(s) 308, 515, 943, 1060
BshNI GGYRCC 3 cut(s) 400, 828, 1398
BshTI ACCGGT 1 cut(s) 681
BsiEI CGRYCG 1 cut(s) 682
BsiHKAI GWGCWC 2 cut(s) 1301, 1495
BsiHKCI CYCGRG 1 cut(s) 353
BslFI GGGAC 3 cut(s) 507, 776, 1184
BsmAI GTCTC 2 cut(s) 414, 1751
BsmBI CGTCTC 2 cut(s) 414, 1751
BsmFI GGGAC 3 cut(s) 507, 776, 1184
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 4 cut(s) 308, 515, 943, 1060
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 4 cut(s) 671, 1301, 1495, 1516
Bsp1720I GCTNAGC 1 cut(s) 703
BspANI GGCC 4 cut(s) 308, 515, 943, 1060
BspCNI CTCAG 4 cut(s) 716, 721, 922, 1879
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 8 cut(s) 34, 402, 630, 668, 830, 1279, 1400, 1635
BspMI ACCTGC 1 cut(s) 989
BspPI GGATC 8 cut(s) 984, 1184, 1218, 1463, 1628, 1641, 1769, 1814
BspT107I GGYRCC 3 cut(s) 400, 828, 1398
BspTI CTTAAG 2 cut(s) 782, 1106
BsrDI GCAATG 2 cut(s) 481, 1394
BsrFI RCCGGY 4 cut(s) 397, 674, 681, 698
BssAI RCCGGY 4 cut(s) 397, 674, 681, 698
BssECI CCNNGG 6 cut(s) 353, 404, 501, 792, 1444, 1517
BssNI GRCGYC 1 cut(s) 401
BssT1I CCWWGG 4 cut(s) 501, 792, 1444, 1517
Bst2UI CCWGG 4 cut(s) 202, 945, 1396, 1677
Bst4CI ACNGT 2 cut(s) 825, 1867
Bst6I CTCTTC 3 cut(s) 438, 943, 1684
BstACI GRCGYC 1 cut(s) 401
BstAFI CTTAAG 2 cut(s) 782, 1106
BstAPI GCANNNNNTGC 1 cut(s) 1808
BstBAI YACGTR 1 cut(s) 1511
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 5 cut(s) 703, 708, 909, 1478, 1887
BstF5I GGATG 7 cut(s) 96, 268, 874, 895, 1052, 1126, 1770
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 2 cut(s) 403, 882
BstMAI GTCTC 2 cut(s) 414, 1751
BstMCI CGRYCG 1 cut(s) 682
BstMWI GCNNNNNNNGC 5 cut(s) 11, 628, 675, 1152, 1808
BstNI CCWGG 4 cut(s) 202, 945, 1396, 1677
BstNSI RCATGY 1 cut(s) 769
BstPAI GACNNNNGTC 1 cut(s) 1176
BstSCI CCNGG 8 cut(s) 200, 352, 353, 403, 943, 1042, 1394, 1675
BstSLI GKGCMC 1 cut(s) 1516
BstV1I GCAGC 4 cut(s) 26, 307, 634, 1823
BstX2I RGATCY 7 cut(s) 21, 1189, 1210, 1416, 1633, 1774, 1819
BstYI RGATCY 7 cut(s) 21, 1189, 1210, 1416, 1633, 1774, 1819
BsuRI GGCC 4 cut(s) 308, 515, 943, 1060
BtgZI GCGATG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 1761
BtsCI GGATG 7 cut(s) 96, 268, 874, 895, 1052, 1126, 1770
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 3 cut(s) 531, 830, 875
BveI ACCTGC 1 cut(s) 989
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 1886
CciI TCATGA 1 cut(s) 979
CfoI GCGC 2 cut(s) 403, 882
Cfr10I RCCGGY 4 cut(s) 397, 674, 681, 698
Cfr13I GGNCC 6 cut(s) 278, 338, 392, 411, 514, 1673
Cfr9I CCCGGG 1 cut(s) 353
CpoI CGGWCCG 2 cut(s) 278, 338
CseI GACGC 1 cut(s) 20
Csp6I GTAC 7 cut(s) 219, 457, 580, 969, 1460, 1726, 1828
CspAI ACCGGT 1 cut(s) 681
CspI CGGWCCG 2 cut(s) 278, 338
CviAII CATG 5 cut(s) 766, 980, 1457, 1571, 1666
CviQI GTAC 7 cut(s) 219, 457, 580, 969, 1460, 1726, 1828
DdeI CTNAG 5 cut(s) 703, 708, 909, 1478, 1887
DinI GGCGCC 1 cut(s) 402
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
Eam1104I CTCTTC 3 cut(s) 438, 943, 1684
EarI CTCTTC 3 cut(s) 438, 943, 1684
EciI GGCGGA 3 cut(s) 20, 151, 1464
Ecl136II GAGCTC 1 cut(s) 1493
Eco130I CCWWGG 4 cut(s) 501, 792, 1444, 1517
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 2 cut(s) 671, 1495
Eco32I GATATC 1 cut(s) 1365
Eco47I GGWCC 5 cut(s) 278, 338, 392, 411, 1673
Eco53kI GAGCTC 1 cut(s) 1493
Eco57I CTGAAG 4 cut(s) 509, 657, 1217, 1814
Eco72I CACGTG 1 cut(s) 1511
Eco88I CYCGRG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 1493
EcoRII CCWGG 4 cut(s) 200, 943, 1394, 1675
EcoRV GATATC 1 cut(s) 1365
EcoT14I CCWWGG 4 cut(s) 501, 792, 1444, 1517
EcoT38I GRGCYC 2 cut(s) 671, 1495
EgeI GGCGCC 1 cut(s) 402
EheI GGCGCC 1 cut(s) 402
ErhI CCWWGG 4 cut(s) 501, 792, 1444, 1517
Esp3I CGTCTC 2 cut(s) 414, 1751
FaeI CATG 5 cut(s) 769, 983, 1460, 1574, 1669
FaqI GGGAC 3 cut(s) 507, 776, 1184
FatI CATG 5 cut(s) 765, 979, 1456, 1570, 1665
FbaI TGATCA 2 cut(s) 526, 1749
Fnu4HI GCNGC 6 cut(s) 15, 296, 344, 347, 623, 1812
FokI GGATG 7 cut(s) 83, 275, 881, 902, 1059, 1133, 1777
FriOI GRGCYC 2 cut(s) 671, 1495
Fsp4HI GCNGC 6 cut(s) 15, 296, 344, 347, 623, 1812
FspBI CTAG 7 cut(s) 252, 540, 743, 834, 939, 1116, 1518
FspI TGCGCA 1 cut(s) 881
GlaI GCGC 2 cut(s) 402, 881
GluI GCNGC 6 cut(s) 15, 296, 344, 347, 623, 1812
GsaI CCCAGC 1 cut(s) 1858
GsuI CTGGAG 4 cut(s) 647, 685, 1326, 1821
HaeII RGCGCY 1 cut(s) 404
HaeIII GGCC 4 cut(s) 308, 515, 943, 1060
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 403, 882
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 5 cut(s) 769, 983, 1460, 1574, 1669
Hin6I GCGC 2 cut(s) 401, 880
HinP1I GCGC 2 cut(s) 401, 880
HindIII AAGCTT 1 cut(s) 1711
HinfI GANTC 7 cut(s) 257, 302, 431, 463, 1128, 1411, 1883
HphI GGTGA 4 cut(s) 392, 481, 688, 952
Hpy166II GTNNAC 4 cut(s) 290, 821, 1313, 1607
Hpy8I GTNNAC 4 cut(s) 290, 821, 1313, 1607
Hpy99I CGWCG 8 cut(s) 14, 32, 117, 317, 320, 323, 374, 377
HpyAV CCTTC 9 cut(s) 137, 183, 484, 632, 977, 1156, 1192, 1624, 1670
HpyCH4III ACNGT 2 cut(s) 825, 1867
HpyCH4IV ACGT 5 cut(s) 1071, 1177, 1510, 1609, 1760
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 628, 675, 1152, 1808
HpyF3I CTNAG 5 cut(s) 703, 708, 909, 1478, 1887
HpySE526I ACGT 5 cut(s) 1071, 1177, 1510, 1609, 1760
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 5 cut(s) 769, 983, 1460, 1574, 1669
HspAI GCGC 2 cut(s) 401, 880
KasI GGCGCC 1 cut(s) 400
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
Ksp22I TGATCA 2 cut(s) 526, 1749
LmnI GCTCC 5 cut(s) 32, 628, 666, 1490, 1840
Lsp1109I GCAGC 4 cut(s) 26, 307, 634, 1823
LweI GCATC 3 cut(s) 253, 316, 427
MaeI CTAG 7 cut(s) 252, 540, 743, 834, 939, 1116, 1518
MaeII ACGT 5 cut(s) 1071, 1177, 1510, 1609, 1760
MaeIII GTNAC 5 cut(s) 116, 694, 728, 873, 958
MboII GAAGA 5 cut(s) 455, 960, 1137, 1701, 1784
MfeI CAATTG 1 cut(s) 1284
MflI RGATCY 7 cut(s) 21, 1189, 1210, 1416, 1633, 1774, 1819
MhlI GDGCHC 4 cut(s) 671, 1301, 1495, 1516
MluCI AATT 4 cut(s) 44, 208, 1284, 1406
Mly113I GGCGCC 1 cut(s) 401
MlyI GAGTC 1 cut(s) 1877
MmeI TCCRAC 2 cut(s) 336, 1496
MreI CGCCGGCG 1 cut(s) 397
MroNI GCCGGC 1 cut(s) 397
MseI TTAA 5 cut(s) 783, 894, 1038, 1107, 1641
MslI CAYNNNNRTG 2 cut(s) 503, 1089
MspA1I CMGCKG 2 cut(s) 17, 625
MspCI CTTAAG 2 cut(s) 782, 1106
MspR9I CCNGG 8 cut(s) 202, 354, 355, 405, 945, 1044, 1396, 1677
MunI CAATTG 1 cut(s) 1284
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 4 cut(s) 202, 945, 1396, 1677
MwoI GCNNNNNNNGC 5 cut(s) 11, 628, 675, 1152, 1808
NaeI GCCGGC 1 cut(s) 399
NarI GGCGCC 1 cut(s) 401
NciI CCSGG 4 cut(s) 354, 355, 405, 1044
NgoMIV GCCGGC 1 cut(s) 397
NlaIII CATG 5 cut(s) 769, 983, 1460, 1574, 1669
NlaIV GGNNCC 8 cut(s) 34, 402, 630, 668, 830, 1279, 1400, 1635
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 4 cut(s) 694, 728, 873, 958
NsbI TGCGCA 1 cut(s) 881
NspI RCATGY 1 cut(s) 769
OliI CACNNNNGTG 1 cut(s) 503
PagI TCATGA 1 cut(s) 979
PaqCI CACCTGC 1 cut(s) 989
PceI AGGCCT 1 cut(s) 943
PciI ACATGT 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 1 cut(s) 604
PdiI GCCGGC 1 cut(s) 399
PfeI GAWTC 6 cut(s) 257, 302, 431, 463, 1128, 1411
PflMI CCANNNNNTGG 2 cut(s) 201, 1682
PinAI ACCGGT 1 cut(s) 681
PkrI GCNGC 6 cut(s) 16, 297, 345, 348, 624, 1813
PleI GAGTC 1 cut(s) 1877
PluTI GGCGCC 1 cut(s) 404
PmaCI CACGTG 1 cut(s) 1511
PmlI CACGTG 1 cut(s) 1511
PpsI GAGTC 1 cut(s) 1877
Ppu21I YACGTR 1 cut(s) 1511
PscI ACATGT 1 cut(s) 765
PshAI GACNNNNGTC 1 cut(s) 1176
Psp124BI GAGCTC 1 cut(s) 1495
Psp6I CCWGG 4 cut(s) 200, 943, 1394, 1675
PspCI CACGTG 1 cut(s) 1511
PspFI CCCAGC 1 cut(s) 1854
PspGI CCWGG 4 cut(s) 200, 943, 1394, 1675
PspN4I GGNNCC 8 cut(s) 34, 402, 630, 668, 830, 1279, 1400, 1635
PspPI GGNCC 6 cut(s) 278, 338, 392, 411, 514, 1673
PstNI CAGNNNCTG 1 cut(s) 1886
PsuI RGATCY 7 cut(s) 21, 1189, 1210, 1416, 1633, 1774, 1819
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 7 cut(s) 220, 458, 581, 970, 1461, 1727, 1829
RsaNI GTAC 7 cut(s) 219, 457, 580, 969, 1460, 1726, 1828
RseI CAYNNNNRTG 2 cut(s) 503, 1089
Rsr2I CGGWCCG 2 cut(s) 278, 338
RsrII CGGWCCG 2 cut(s) 278, 338
SacI GAGCTC 1 cut(s) 1495
SaqAI TTAA 5 cut(s) 783, 894, 1038, 1107, 1641
SatI GCNGC 6 cut(s) 15, 296, 344, 347, 623, 1812
Sau96I GGNCC 6 cut(s) 278, 338, 392, 411, 514, 1673
SchI GAGTC 1 cut(s) 1877
ScrFI CCNGG 8 cut(s) 202, 354, 355, 405, 945, 1044, 1396, 1677
SduI GDGCHC 4 cut(s) 671, 1301, 1495, 1516
SfaNI GCATC 3 cut(s) 253, 316, 427
SfoI GGCGCC 1 cut(s) 402
SgrAI CRCCGGYG 2 cut(s) 397, 674
SinI GGWCC 5 cut(s) 278, 338, 392, 411, 1673
SmaI CCCGGG 1 cut(s) 355
SmiMI CAYNNNNRTG 2 cut(s) 503, 1089
SmlI CTYRAG 3 cut(s) 782, 1106, 1138
SmoI CTYRAG 3 cut(s) 782, 1106, 1138
Sse9I AATT 4 cut(s) 44, 208, 1284, 1406
SseBI AGGCCT 1 cut(s) 943
SspDI GGCGCC 1 cut(s) 400
SspMI CTAG 7 cut(s) 252, 540, 743, 834, 939, 1116, 1518
SstI GAGCTC 1 cut(s) 1495
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 8 cut(s) 200, 352, 353, 403, 943, 1042, 1394, 1675
StyI CCWWGG 4 cut(s) 501, 792, 1444, 1517
TaaI ACNGT 2 cut(s) 825, 1867
TaiI ACGT 5 cut(s) 1074, 1180, 1513, 1612, 1763
TaqI TCGA 2 cut(s) 90, 1330
TasI AATT 4 cut(s) 44, 208, 1284, 1406
TatI WGTACW 3 cut(s) 968, 1459, 1827
TauI GCSGC 2 cut(s) 346, 349
TfiI GAWTC 6 cut(s) 257, 302, 431, 463, 1128, 1411
Tru1I TTAA 5 cut(s) 783, 894, 1038, 1107, 1641
Tru9I TTAA 5 cut(s) 783, 894, 1038, 1107, 1641
TscAI CASTG 3 cut(s) 538, 830, 882
TseFI GTSAC 4 cut(s) 694, 728, 873, 958
TseI GCWGC 4 cut(s) 14, 295, 622, 1811
Tsp45I GTSAC 4 cut(s) 694, 728, 873, 958
TspDTI ATGAA 4 cut(s) 611, 996, 1199, 1748
TspGWI ACGGA 4 cut(s) 45, 206, 747, 1006
TspMI CCCGGG 1 cut(s) 353
TspRI CASTG 3 cut(s) 538, 830, 882
Van91I CCANNNNNTGG 2 cut(s) 201, 1682
Vha464I CTTAAG 2 cut(s) 782, 1106
VpaK11BI GGWCC 5 cut(s) 278, 338, 392, 411, 1673
XapI RAATTY 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 539
XceI RCATGY 1 cut(s) 769
XmaI CCCGGG 1 cut(s) 353
XmaJI CCTAGG 1 cut(s) 1517
XspI CTAG 7 cut(s) 252, 540, 743, 834, 939, 1116, 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.