Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

8942750 .. 8945244

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCGACTTTTGATGATGGAGATTTCCCAGCTCAAACCCATTCTCCGTCTGAACACGAAGACTTTGGTGGCTACGATAATTTCTCCGAAGCACAGCAACCTCCGACTCAACATCAATCCGGTGGATTCTCTTCTTTCAATGGAGATCCTGCTTCCCCAAATGGATATGGATTTGGTGCTTCTTCACCTAACCATGACTTTTCCTCGCCTTTTGAATCTTCCGTTAACGATGCTAACGGAAACGGCGGCGGCAGCGGTGGTGATGCGATCTTCGCTTCCGATGGTCCGATTCTTCCAGATCCAAATGAGATGAGAGAGGAGGGTTTCCAACGCCGTGAGTGGCGCCGTTTGAACACCATTCACCTTGAGGAGAAGGAAAAGAAAGAGAAGGAGATGCGGAATCAGATCATAACTGAAGCAGAAGATTTCAAGAAAGCCTTCTATGAGAAAAGAGACAAGACCATTGAGACCAACAAGACTGATAACCGTGAAAAGGAGAAGCTATACTGGGCTAACCAAGAGAAGTTCCACAAAGAAGTTGACAAGCATTACTGGAAAGCAATTGCAGAGCTAATCCCTCGTGAGGTTCCCAACATTGAGAAAAAGAGAGGGAAAAAGGATCCGGACAAGAAACCATCAGTGAATGTTATTCAGGGTCCTAAACCTGGGAAGCCAACTGATCTAGGGAGAATGAGGCAGATATTCTTGAAGCTCAAGACAAATCCCCCACCTCACATGATGCCGCCTCCTCCTCCAGCCAAAGATGCCAAAGATGGGAAGGATGCGAAAGATGGCAAAGATGCAAAAACTGGGAAAGATGGGAAGGATGCAAAAGGAGGGAAAGACGCTAAGGACTTAAAAGATGGGAAACCTGCAGATCCAAAGGTGACAGAGGAAAAACGTCCTTCACCTGCCAAAGACGCAAGTGTTGAAACAGCGAAACCTGATGCTGCTGCCTCGGGAGAGGGAGAGAAACCTGTAGCTGTGACTGAGGCCGAGGGAACCAAGGCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

338

Amino Acids

37.22

Weight (kDa)

5.89

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	65 - 196	3e-08	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	919
Acc36I	ACCTGC	2 cut(s)	880, 919
AccB1I	GGYRCC	1 cut(s)	342
AccIII	TCCGGA	1 cut(s)	622
AciI	CCGC	6 cut(s)	246, 249, 255, 397, 743, 1010
AclWI	GGATC	5 cut(s)	140, 293, 614, 627, 872
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	343
AfiI	CCNNNNNNNGG	4 cut(s)	493, 583, 665, 774
AgsI	TTSAA	6 cut(s)	139, 215, 352, 430, 709, 932
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	5 cut(s)	32, 502, 571, 712, 983
AluI	AGCT	5 cut(s)	32, 502, 571, 712, 983
Alw26I	GTCTC	2 cut(s)	447, 461
AlwI	GGATC	5 cut(s)	140, 293, 614, 627, 872
Ama87I	CYCGRG	1 cut(s)	958
Aor13HI	TCCGGA	1 cut(s)	622
AoxI	GGCC	1 cut(s)	993
ApeKI	GCWGC	3 cut(s)	252, 950, 953
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	284, 656
AsuHPI	GGTGA	5 cut(s)	177, 272, 353, 898, 900
AvaI	CYCGRG	1 cut(s)	958
AvaII	GGWCC	2 cut(s)	284, 656
BamHI	GGATCC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	342
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	264, 937, 940
BccI	CCATC	7 cut(s)	11, 275, 643, 767, 785, 812, 857
BceAI	ACGGC	3 cut(s)	259, 318, 330
BciT130I	CCWGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	447, 461
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	2 cut(s)	873, 978
BfoI	RGCGCY	1 cut(s)	346
BfuAI	ACCTGC	2 cut(s)	880, 919
BisI	GCNGC	6 cut(s)	247, 250, 253, 743, 951, 954
BlsI	GCNGC	6 cut(s)	248, 251, 254, 744, 952, 955
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	2 cut(s)	284, 656
BmeT110I	CYCGRG	1 cut(s)	958
BmgT120I	GGNCC	2 cut(s)	284, 656
BmiI	GGNNCC	5 cut(s)	344, 588, 621, 657, 1003
BmrFI	CCNGG	1 cut(s)	666
BmrI	ACTGGG	2 cut(s)	517, 819
BmsI	GCATC	9 cut(s)	220, 253, 384, 729, 754, 772, 790, 817, 937
BmuI	ACTGGG	2 cut(s)	517, 819
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	2 cut(s)	386, 698
BsaHI	GRCGYC	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	4 cut(s)	665, 957, 996, 1005
BsaWI	WCCGGW	2 cut(s)	119, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	4 cut(s)	493, 583, 665, 774
Bse1I	ACTGG	3 cut(s)	512, 557, 814
BseAI	TCCGGA	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	4 cut(s)	665, 957, 996, 1005
BseGI	GGATG	2 cut(s)	787, 832
BseLI	CCNNNNNNNGG	4 cut(s)	493, 583, 665, 774
BseMII	CTCAG	1 cut(s)	981
BseNI	ACTGG	3 cut(s)	512, 557, 814
BseRI	GAGGAG	4 cut(s)	332, 383, 738, 741
BseXI	GCAGC	3 cut(s)	264, 937, 940
BseYI	CCCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	995
BshNI	GGYRCC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	958
BsiSI	CCGG	2 cut(s)	120, 623
BslI	CCNNNNNNNGG	4 cut(s)	493, 583, 665, 774
BsmAI	GTCTC	2 cut(s)	447, 461
BsnI	GGCC	1 cut(s)	995
Bso31I	GGTCTC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	958
Bsp13I	TCCGGA	1 cut(s)	622
Bsp143I	GATC	7 cut(s)	145, 267, 298, 405, 619, 679, 877
BspACI	CCGC	6 cut(s)	246, 249, 255, 397, 743, 1010
BspANI	GGCC	1 cut(s)	995
BspCNI	CTCAG	1 cut(s)	982
BspEI	TCCGGA	1 cut(s)	622
BspLI	GGNNCC	5 cut(s)	344, 588, 621, 657, 1003
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	2 cut(s)	880, 919
BspPI	GGATC	5 cut(s)	140, 293, 614, 627, 872
BspT107I	GGYRCC	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	461
BsrI	ACTGG	3 cut(s)	512, 557, 814
BssECI	CCNNGG	4 cut(s)	665, 957, 996, 1005
BssMI	GATC	7 cut(s)	145, 267, 298, 405, 619, 679, 877
BssNI	GRCGYC	1 cut(s)	343
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	1005
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	849, 990
BstF5I	GGATG	2 cut(s)	787, 832
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	7 cut(s)	148, 270, 301, 408, 622, 682, 880
BstMAI	GTCTC	2 cut(s)	447, 461
BstMBI	GATC	7 cut(s)	145, 267, 298, 405, 619, 679, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	252, 272, 764, 920
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	2 cut(s)	873, 978
BstV1I	GCAGC	3 cut(s)	264, 937, 940
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	4 cut(s)	145, 298, 619, 877
BstYI	RGATCY	4 cut(s)	145, 298, 619, 877
BsuRI	GGCC	1 cut(s)	995
BtsCI	GGATG	2 cut(s)	787, 832
BtsIMutI	CAGTG	1 cut(s)	645
BveI	ACCTGC	2 cut(s)	880, 919
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	284, 656
CseI	GACGC	2 cut(s)	854, 929
CviAII	CATG	2 cut(s)	194, 736
DdeI	CTNAG	2 cut(s)	849, 990
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	7 cut(s)	147, 269, 300, 407, 621, 681, 879
DpnII	GATC	7 cut(s)	145, 267, 298, 405, 619, 679, 877
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	1005
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	284, 656
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	958
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	1005
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	1005
FaeI	CATG	2 cut(s)	197, 739
FaiI	YATR	6 cut(s)	168, 195, 410, 444, 505, 737
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FatI	CATG	2 cut(s)	193, 735
Fnu4HI	GCNGC	6 cut(s)	247, 250, 253, 743, 951, 954
FokI	GGATG	2 cut(s)	794, 839
Fsp4HI	GCNGC	6 cut(s)	247, 250, 253, 743, 951, 954
FspBI	CTAG	1 cut(s)	683
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	6 cut(s)	247, 250, 253, 743, 951, 954
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	738
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	995
HapII	CCGG	2 cut(s)	120, 623
HgaI	GACGC	2 cut(s)	854, 929
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	197, 739
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	2 cut(s)	226, 541
HindII	GTYRAC	2 cut(s)	226, 541
HinfI	GANTC	5 cut(s)	106, 126, 215, 289, 400
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	120, 623
HphI	GGTGA	5 cut(s)	177, 272, 353, 898, 900
Hpy166II	GTNNAC	2 cut(s)	226, 541
Hpy188I	TCNGA	6 cut(s)	52, 88, 105, 280, 288, 405
Hpy188III	TCNNGA	7 cut(s)	296, 430, 581, 623, 706, 715, 960
Hpy8I	GTNNAC	2 cut(s)	226, 541
HpyAV	CCTTC	6 cut(s)	367, 382, 448, 772, 817, 915
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	4 cut(s)	566, 803, 830, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	252, 272, 764, 920
HpyF3I	CTNAG	2 cut(s)	849, 990
HpySE526I	ACGT	1 cut(s)	901
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	197, 739
HspAI	GCGC	1 cut(s)	343
KasI	GGCGCC	1 cut(s)	342
Kpn2I	TCCGGA	1 cut(s)	622
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	7 cut(s)	145, 267, 298, 405, 619, 679, 877
Lsp1109I	GCAGC	3 cut(s)	264, 937, 940
LweI	GCATC	9 cut(s)	220, 253, 384, 729, 754, 772, 790, 817, 937
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	2 cut(s)	886, 985
MalI	GATC	7 cut(s)	147, 269, 300, 407, 621, 681, 879
MboI	GATC	7 cut(s)	145, 267, 298, 405, 619, 679, 877
MboII	GAAGA	7 cut(s)	71, 123, 174, 210, 262, 284, 434
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	4 cut(s)	145, 298, 619, 877
MluCI	AATT	2 cut(s)	79, 561
Mly113I	GGCGCC	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	2 cut(s)	128, 352
MroI	TCCGGA	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	2 cut(s)	225, 857
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	2 cut(s)	120, 623
MspR9I	CCNGG	1 cut(s)	666
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	4 cut(s)	252, 272, 764, 920
NarI	GGCGCC	1 cut(s)	343
NdeII	GATC	7 cut(s)	145, 267, 298, 405, 619, 679, 877
NlaIII	CATG	2 cut(s)	197, 739
NlaIV	GGNNCC	5 cut(s)	344, 588, 621, 657, 1003
NmuCI	GTSAC	2 cut(s)	886, 985
PaqCI	CACCTGC	1 cut(s)	919
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	4 cut(s)	126, 215, 289, 400
PkrI	GCNGC	6 cut(s)	248, 251, 254, 744, 952, 955
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	656
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	664
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	5 cut(s)	344, 588, 621, 657, 1003
PspPI	GGNCC	2 cut(s)	284, 656
PspPPI	RGGWCCY	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	4 cut(s)	145, 298, 619, 877
SaqAI	TTAA	2 cut(s)	225, 857
SatI	GCNGC	6 cut(s)	247, 250, 253, 743, 951, 954
Sau3AI	GATC	7 cut(s)	145, 267, 298, 405, 619, 679, 877
Sau96I	GGNCC	2 cut(s)	284, 656
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	666
SfaNI	GCATC	9 cut(s)	220, 253, 384, 729, 754, 772, 790, 817, 937
SfcI	CTRYAG	2 cut(s)	873, 978
SfoI	GGCGCC	1 cut(s)	344
SinI	GGWCC	2 cut(s)	284, 656
SmlI	CTYRAG	2 cut(s)	365, 713
SmoI	CTYRAG	2 cut(s)	365, 713
Sse9I	AATT	2 cut(s)	79, 561
SsiI	CCGC	6 cut(s)	246, 249, 255, 397, 743, 1010
SspDI	GGCGCC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	1005
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	1 cut(s)	904
TasI	AATT	2 cut(s)	79, 561
TauI	GCSGC	3 cut(s)	249, 252, 745
TfiI	GAWTC	4 cut(s)	126, 215, 289, 400
Tru1I	TTAA	2 cut(s)	225, 857
Tru9I	TTAA	2 cut(s)	225, 857
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	886, 985
TseI	GCWGC	3 cut(s)	252, 950, 953
Tsp45I	GTSAC	2 cut(s)	886, 985
TspGWI	ACGGA	3 cut(s)	36, 211, 252
TspRI	CASTG	1 cut(s)	645
VpaK11BI	GGWCC	2 cut(s)	284, 656
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.