Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

32171763 .. 32174348

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1251000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATTCGAATCCTAACATTTTCGCCTCTAGTGAGCCGGTGCTGCCTCAGCCGGAGGAGATGCGAGAGGAAGGCTTTGCTCGCCGTGAGTGGCGTCGTCTAAATGTCATCCATCTAGAGGAAAATGAAAACAGAGAAAGGGAGATGCGGAACCAGATTATCGAGGAAGCCGAGGAATTTAAGCGGGCCTTCTATGAGAAACGGAAGCTCAGCTGTGAAATTAACAAAGCCCACAACAGAGAAAGGGAGAAGCTGTACCTGGCCAACCAAGAGAAGTTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATAGCGGAGCTGATACCTCGTGAGGTTCCTAATATTGAGAAGAAGAGAGGGAAGAAAGATCCTGACAAGAAGCCCTCAATCGTTGTCATCCAGGGCCCAAAACCTGGTAAACTGACTCATCTTTCAAGGATGCGGCAGATTTTCCTGAAGCTGAAACAGACCCTCCACCACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

163

Amino Acids

19.52

Weight (kDa)

9.49

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	4 cut(s)	148, 184, 317, 445
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	94
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	118, 416
AgsI	TTSAA	1 cut(s)	438
AjnI	CCWGG	3 cut(s)	258, 402, 415
AluBI	AGCT	6 cut(s)	208, 213, 253, 290, 322, 463
AluI	AGCT	6 cut(s)	208, 213, 253, 290, 322, 463
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	3 cut(s)	186, 261, 406
ApaI	GGGCCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	186, 406, 407
AsuII	TTCGAA	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	3 cut(s)	260, 404, 417
BfaI	CTAG	2 cut(s)	30, 116
BisI	GCNGC	2 cut(s)	44, 446
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	2 cut(s)	45, 447
Bme1390I	CCNGG	3 cut(s)	260, 404, 417
BmgT120I	GGNCC	3 cut(s)	186, 406, 407
BmiI	GGNNCC	3 cut(s)	152, 339, 408
BmrFI	CCNGG	3 cut(s)	260, 404, 417
BmsI	GCATC	3 cut(s)	51, 135, 432
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	171, 403
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 459, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 416
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	308
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	260, 404, 417
BseDI	CCNNGG	2 cut(s)	171, 403
BseGI	GGATG	3 cut(s)	108, 399, 447
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	118, 416
BseMII	CTCAG	2 cut(s)	62, 223
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	3 cut(s)	188, 263, 408
BsiSI	CCGG	2 cut(s)	38, 53
BslI	CCNNNNNNNGG	2 cut(s)	118, 416
BsnI	GGCC	3 cut(s)	188, 263, 408
Bsp119I	TTCGAA	1 cut(s)	8
Bsp120I	GGGCCC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	1 cut(s)	370
Bsp1720I	GCTNAGC	1 cut(s)	209
BspACI	CCGC	4 cut(s)	148, 184, 317, 445
BspANI	GGCC	3 cut(s)	188, 263, 408
BspCNI	CTCAG	2 cut(s)	61, 222
BspLI	GGNNCC	3 cut(s)	152, 339, 408
BspPI	GGATC	1 cut(s)	365
BspT104I	TTCGAA	1 cut(s)	8
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	171, 403
BssMI	GATC	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	94
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	3 cut(s)	260, 404, 417
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	82, 186
BstDEI	CTNAG	2 cut(s)	48, 209
BstF5I	GGATG	3 cut(s)	108, 399, 447
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 49, 81
BstNI	CCWGG	3 cut(s)	260, 404, 417
BstSCI	CCNGG	3 cut(s)	258, 402, 415
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	3 cut(s)	188, 263, 408
BtsCI	GGATG	3 cut(s)	108, 399, 447
Cac8I	GCNNGC	2 cut(s)	82, 186
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	186, 406, 407
CseI	GACGC	1 cut(s)	83
CsiI	ACCWGGT	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	486
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	48, 209
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	3 cut(s)	258, 402, 415
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	1 cut(s)	489
FaiI	YATR	2 cut(s)	195, 487
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	1 cut(s)	485
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	44, 446
FokI	GGATG	3 cut(s)	95, 386, 454
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	44, 446
FspBI	CTAG	2 cut(s)	30, 116
GluI	GCNGC	2 cut(s)	44, 446
HaeIII	GGCC	3 cut(s)	188, 263, 408
HapII	CCGG	2 cut(s)	38, 53
HgaI	GACGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	489
HinfI	GANTC	3 cut(s)	5, 10, 427
HpaII	CCGG	2 cut(s)	38, 53
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188III	TCNNGA	4 cut(s)	116, 332, 374, 457
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	65, 199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 49, 81
HpyF3I	CTNAG	2 cut(s)	48, 209
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	3 cut(s)	51, 135, 432
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	2 cut(s)	30, 116
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	3 cut(s)	364, 367, 376
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	410
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	2 cut(s)	176, 219
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	421
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	180, 222
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	2 cut(s)	38, 53
MspR9I	CCNGG	3 cut(s)	260, 404, 417
MvaI	CCWGG	3 cut(s)	260, 404, 417
MwoI	GCNNNNNNNGC	3 cut(s)	43, 49, 81
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	489
NlaIV	GGNNCC	3 cut(s)	152, 339, 408
NmeAIII	GCCGAG	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	5, 10
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	45, 447
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	258, 402, 415
PspGI	CCWGG	3 cut(s)	258, 402, 415
PspN4I	GGNNCC	3 cut(s)	152, 339, 408
PspOMI	GGGCCC	1 cut(s)	406
PspPI	GGNCC	3 cut(s)	186, 406, 407
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	180, 222
SatI	GCNGC	2 cut(s)	44, 446
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	3 cut(s)	186, 406, 407
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	3 cut(s)	260, 404, 417
SduI	GDGCHC	1 cut(s)	410
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	3 cut(s)	51, 135, 432
SfuI	TTCGAA	1 cut(s)	8
Sse9I	AATT	2 cut(s)	176, 219
SsiI	CCGC	4 cut(s)	148, 184, 317, 445
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	2 cut(s)	30, 116
StyD4I	CCNGG	3 cut(s)	258, 402, 415
TaqI	TCGA	2 cut(s)	8, 162
TasI	AATT	2 cut(s)	176, 219
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	2 cut(s)	5, 10
Tru1I	TTAA	2 cut(s)	180, 222
Tru9I	TTAA	2 cut(s)	180, 222
TseI	GCWGC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	141
TspGWI	ACGGA	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	416
XapI	RAATTY	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	115
XspI	CTAG	2 cut(s)	30, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.