Rh2AG319200

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009774
Physical Location & Seq
Reverse (-)
45568413 .. 45572559
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG319200.1

Sequence Viewer

Length: 1155 bp
ATGTCGTCCTTCGACTCATTTCCTAACGAGGACGAACCCCATAACCTATCCCCCAAAATTCAACCTTTCAACGACGATGGTTACATGGGCTACGACCCGTCGTTCAACCCTCCCACCCAAGTCGACTTCTCCTCCTCCGACCCATCACCTCCGCCTCAACCACTCCACTCAGATTTTCATGGCGATGTTGTTCTTCCCAACGAGCAGCAGCAACAGCAGCACTCACCCGACCCCTACGGAGGAGGAGGGTTTGGAATTGAAGCCTCCAACCCCAACCCCAACCCCAATGACTACGCGTTGCCATTTGATTCGGCGGTTTCTGAGAGCAATGCAGATGGTAATAATGAGGGTGACATTTTCACCTCCGATGGGCCGGTGCTTCCCCCTCCAGAGCAAATGCGCGAGGAAGGCTTTGCACGCCGTGAGTGGCGCCGTCTAAATGCCATTCATCTTGAGGAAAAGGAGAAAAGAGAAAAAGAGATGCGAAACCAGATTATTGAAGAAGCTGAAGAGTTTAAACGGGACTTTTATGAGAAAAGGAATCTCAATTGTGAAACTAACAAAGCTAACAATAGAGAAAGAGAGAAGCTGTACTTGGCCAACCAAGAAAAGTTCCACAAAGAAGCTGACAAGCATTACTGGAAAGCAATAGCGGAGCTCATTCCTCGAGAGGTTCCTAATATTGAGAAGAAGAGAGGTAAAAAAGATCCTGATAAAAAGCCTTCAATCGTTGTCATCCAGGGTCCCAAACCTGGGAAACCTACAGATCTTTCACGAATGCGCCAAATTTTTCTGAAGCTGAAACAGACCCCTCCTCCACACATGATGCCTCCTCCACCGACACCTGCCAAAGATGGCAATGATGCAAAGGACGAAAAGGATGGAAAGGAAGGGAAAGACACAAAGGAAAGGAAGGATCCAAAGAAGGAAAAAATAAATACACCAATTGCAGTTGGAAAAACACCAGTCTCACCTTCCAAAGGTGTTACTGCTAATGGTACAAAGGATGCTTCAACACCAGAGGCTCCTGCTGAACCAAAAGTTGAGCAAACTGGTGAACATGAAGGTCAACTACCTACTGAACCCAAAGGTGAGCAACCTTTAGAACCCAAGGGTGAGCAACTCGCTGATGCAGGGCCAACCCTTAAAGAGTGA

Protein Analysis

384

Amino Acids

43.02

Weight (kDa)

5.26

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_lg_ch PF01086 121 - 226 3.4e-09 Clathrin light chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 853
Acc36I ACCTGC 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 429
AccI GTMKAC 1 cut(s) 123
AccII CGCG 2 cut(s) 296, 402
AciI CCGC 3 cut(s) 152, 314, 653
AclWI GGATC 3 cut(s) 701, 911, 924
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 2 cut(s) 57, 786
AcuI CTGAAG 2 cut(s) 528, 815
AcyI GRCGYC 1 cut(s) 430
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 2 cut(s) 593, 1000
AfiI CCNNNNNNNGG 5 cut(s) 239, 369, 752, 753, 980
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 7 cut(s) 62, 70, 106, 260, 500, 726, 1014
AjnI CCWGG 2 cut(s) 738, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AluBI AGCT 6 cut(s) 506, 566, 589, 626, 658, 799
AluI AGCT 6 cut(s) 506, 566, 589, 626, 658, 799
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 1 cut(s) 973
AlwI GGATC 3 cut(s) 701, 911, 924
Ama87I CYCGRG 1 cut(s) 666
AoxI GGCC 3 cut(s) 371, 597, 1136
ApeKI GCWGC 3 cut(s) 205, 208, 217
ApoI RAATTY 2 cut(s) 57, 786
AspLEI GCGC 3 cut(s) 402, 432, 783
AspS9I GGNCC 3 cut(s) 371, 743, 1136
AsuHPI GGTGA 8 cut(s) 138, 216, 352, 362, 963, 1067, 1103, 1127
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 1 cut(s) 743
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 429
BanII GRGCYC 1 cut(s) 660
BarI GAAGNNNNNNTAC 2 cut(s) 1056, 1088
Bbv12I GWGCWC 1 cut(s) 660
BbvI GCAGC 3 cut(s) 217, 220, 229
BccI CCATC 6 cut(s) 71, 151, 329, 362, 848, 875
BceAI ACGGC 2 cut(s) 405, 417
BciT130I CCWGG 2 cut(s) 740, 753
BcoDI GTCTC 1 cut(s) 973
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 433
BfuAI ACCTGC 1 cut(s) 853
BglII AGATCT 1 cut(s) 766
BisI GCNGC 3 cut(s) 206, 209, 218
BlsI GCNGC 3 cut(s) 207, 210, 219
Bme1390I CCNGG 2 cut(s) 740, 753
Bme18I GGWCC 1 cut(s) 743
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 3 cut(s) 371, 743, 1136
BmiI GGNNCC 6 cut(s) 431, 675, 744, 745, 918, 1026
BmrFI CCNGG 2 cut(s) 740, 753
BmsI GCATC 5 cut(s) 471, 816, 853, 997, 1120
BpmI CTGGAG 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 430
BsaJI CCNNGG 3 cut(s) 739, 752, 1110
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 799, 829
Bsc4I CCNNNNNNNGG 5 cut(s) 239, 369, 752, 753, 980
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 3 cut(s) 644, 965, 1057
Bse3DI GCAATG 2 cut(s) 334, 865
BseBI CCWGG 2 cut(s) 740, 753
BseDI CCNNGG 3 cut(s) 739, 752, 1110
BseGI GGATG 3 cut(s) 735, 886, 1012
BseLI CCNNNNNNNGG 5 cut(s) 239, 369, 752, 753, 980
BseMI GCAATG 2 cut(s) 334, 865
BseMII CTCAG 2 cut(s) 183, 312
BseNI ACTGG 3 cut(s) 644, 965, 1057
BseRI GAGGAG 6 cut(s) 121, 124, 255, 258, 804, 822
BseXI GCAGC 3 cut(s) 217, 220, 229
Bsh1236I CGCG 2 cut(s) 296, 402
BshFI GGCC 3 cut(s) 373, 599, 1138
BshNI GGYRCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 660
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 2 cut(s) 536, 729
BslI CCNNNNNNNGG 5 cut(s) 239, 369, 752, 753, 980
BsmAI GTCTC 1 cut(s) 973
BsmFI GGGAC 2 cut(s) 536, 729
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 3 cut(s) 373, 599, 1138
BsoBI CYCGRG 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 3 cut(s) 706, 766, 916
BspACI CCGC 3 cut(s) 152, 314, 653
BspANI GGCC 3 cut(s) 373, 599, 1138
BspCNI CTCAG 2 cut(s) 182, 313
BspFNI CGCG 2 cut(s) 296, 402
BspLI GGNNCC 6 cut(s) 431, 675, 744, 745, 918, 1026
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 3 cut(s) 701, 911, 924
BspT107I GGYRCC 1 cut(s) 429
BsrDI GCAATG 2 cut(s) 334, 865
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 3 cut(s) 644, 965, 1057
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 3 cut(s) 739, 752, 1110
BssMI GATC 3 cut(s) 706, 766, 916
BssNI GRCGYC 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 1110
Bst2UI CCWGG 2 cut(s) 740, 753
Bst6I CTCTTC 2 cut(s) 504, 686
BstACI GRCGYC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 169, 321
BstENI CCTNNNNNAGG 1 cut(s) 978
BstF5I GGATG 3 cut(s) 735, 886, 1012
BstFNI CGCG 2 cut(s) 296, 402
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 3 cut(s) 402, 432, 783
BstKTI GATC 3 cut(s) 709, 769, 919
BstMAI GTCTC 1 cut(s) 973
BstMBI GATC 3 cut(s) 706, 766, 916
BstMWI GCNNNNNNNGC 4 cut(s) 214, 217, 408, 417
BstNI CCWGG 2 cut(s) 740, 753
BstSCI CCNGG 2 cut(s) 738, 751
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 2 cut(s) 296, 402
BstV1I GCAGC 3 cut(s) 217, 220, 229
BstX2I RGATCY 3 cut(s) 706, 766, 916
BstYI RGATCY 3 cut(s) 706, 766, 916
BsuRI GGCC 3 cut(s) 373, 599, 1138
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 735, 886, 1012
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 1 cut(s) 418
CfoI GCGC 3 cut(s) 402, 432, 783
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 3 cut(s) 371, 743, 1136
Csp6I GTAC 2 cut(s) 592, 999
CviAII CATG 4 cut(s) 85, 179, 823, 1061
CviQI GTAC 2 cut(s) 592, 999
DdeI CTNAG 2 cut(s) 169, 321
DinI GGCGCC 1 cut(s) 431
DpnI GATC 3 cut(s) 708, 768, 918
DpnII GATC 3 cut(s) 706, 766, 916
DraI TTTAAA 1 cut(s) 517
DraIII CACNNNGTG 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 2 cut(s) 504, 686
EarI CTCTTC 2 cut(s) 504, 686
EciI GGCGGA 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 1110
Eco24I GRGCYC 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 743
Eco53kI GAGCTC 1 cut(s) 658
Eco57I CTGAAG 2 cut(s) 528, 815
Eco88I CYCGRG 1 cut(s) 666
EcoICRI GAGCTC 1 cut(s) 658
EcoNI CCTNNNNNAGG 1 cut(s) 978
EcoO109I RGGNCCY 1 cut(s) 743
EcoRII CCWGG 2 cut(s) 738, 751
EcoT14I CCWWGG 1 cut(s) 1110
EcoT38I GRGCYC 1 cut(s) 660
EgeI GGCGCC 1 cut(s) 431
EheI GGCGCC 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 1110
FaeI CATG 4 cut(s) 88, 182, 826, 1064
FaiI YATR 6 cut(s) 42, 86, 180, 531, 824, 1062
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FaqI GGGAC 2 cut(s) 536, 729
FatI CATG 4 cut(s) 84, 178, 822, 1060
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 206, 209, 218
FokI GGATG 3 cut(s) 722, 893, 1019
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 3 cut(s) 206, 209, 218
GlaI GCGC 3 cut(s) 401, 431, 782
GluI GCNGC 3 cut(s) 206, 209, 218
GsuI CTGGAG 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 3 cut(s) 373, 599, 1138
HapII CCGG 1 cut(s) 374
HhaI GCGC 3 cut(s) 402, 432, 783
Hin1I GRCGYC 1 cut(s) 430
Hin1II CATG 4 cut(s) 88, 182, 826, 1064
Hin6I GCGC 3 cut(s) 400, 430, 781
HinP1I GCGC 3 cut(s) 400, 430, 781
HincII GTYRAC 2 cut(s) 124, 1070
HindII GTYRAC 2 cut(s) 124, 1070
HinfI GANTC 3 cut(s) 14, 308, 541
HpaII CCGG 1 cut(s) 374
HphI GGTGA 8 cut(s) 138, 216, 352, 362, 963, 1067, 1103, 1127
Hpy166II GTNNAC 3 cut(s) 124, 1058, 1070
Hpy188I TCNGA 5 cut(s) 139, 172, 322, 367, 795
Hpy188III TCNNGA 5 cut(s) 389, 452, 668, 710, 774
Hpy8I GTNNAC 3 cut(s) 124, 1058, 1070
Hpy99I CGWCG 2 cut(s) 77, 103
HpyAV CCTTC 8 cut(s) 19, 401, 732, 884, 907, 919, 984, 1058
HpyCH4V TGCA 5 cut(s) 332, 416, 866, 950, 1133
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 217, 408, 417
HpyF3I CTNAG 2 cut(s) 169, 321
Hsp92I GRCGYC 1 cut(s) 430
Hsp92II CATG 4 cut(s) 88, 182, 826, 1064
HspAI GCGC 3 cut(s) 400, 430, 781
KasI GGCGCC 1 cut(s) 429
KflI GGGWCCC 1 cut(s) 743
Kzo9I GATC 3 cut(s) 706, 766, 916
LmnI GCTCC 2 cut(s) 655, 1030
Lsp1109I GCAGC 3 cut(s) 217, 220, 229
LweI GCATC 5 cut(s) 471, 816, 853, 997, 1120
MaeIII GTNAC 3 cut(s) 80, 350, 985
MalI GATC 3 cut(s) 708, 768, 918
MboI GATC 3 cut(s) 706, 766, 916
MboII GAAGA 5 cut(s) 185, 512, 521, 700, 703
MfeI CAATTG 2 cut(s) 547, 945
MflI RGATCY 3 cut(s) 706, 766, 916
MhlI GDGCHC 1 cut(s) 660
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 5 cut(s) 57, 255, 547, 786, 945
MluI ACGCGT 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 599
Mly113I GGCGCC 1 cut(s) 430
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 3 cut(s) 162, 291, 934
Mox20I TGGCCA 1 cut(s) 599
MscI TGGCCA 1 cut(s) 599
MseI TTAA 2 cut(s) 516, 1146
MslI CAYNNNNRTG 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 599
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 2 cut(s) 740, 753
MssI GTTTAAAC 1 cut(s) 517
MunI CAATTG 2 cut(s) 547, 945
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 2 cut(s) 740, 753
MvnI CGCG 2 cut(s) 296, 402
MwoI GCNNNNNNNGC 4 cut(s) 214, 217, 408, 417
NarI GGCGCC 1 cut(s) 430
NdeII GATC 3 cut(s) 706, 766, 916
NlaIII CATG 4 cut(s) 88, 182, 826, 1064
NlaIV GGNNCC 6 cut(s) 431, 675, 744, 745, 918, 1026
NmuCI GTSAC 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 666
PaqCI CACCTGC 1 cut(s) 853
PctI GAATGC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 308, 541
PkrI GCNGC 3 cut(s) 207, 210, 219
PleI GAGTC 1 cut(s) 8
PluTI GGCGCC 1 cut(s) 433
PmeI GTTTAAAC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 743
Psp124BI GAGCTC 1 cut(s) 660
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 2 cut(s) 738, 751
PspGI CCWGG 2 cut(s) 738, 751
PspN4I GGNNCC 6 cut(s) 431, 675, 744, 745, 918, 1026
PspPI GGNCC 3 cut(s) 371, 743, 1136
PspPPI RGGWCCY 1 cut(s) 743
PsuI RGATCY 3 cut(s) 706, 766, 916
RsaI GTAC 2 cut(s) 593, 1000
RsaNI GTAC 2 cut(s) 592, 999
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 660
SalI GTCGAC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 516, 1146
SatI GCNGC 3 cut(s) 206, 209, 218
Sau3AI GATC 3 cut(s) 706, 766, 916
Sau96I GGNCC 3 cut(s) 371, 743, 1136
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 740, 753
SduI GDGCHC 1 cut(s) 660
SfaNI GCATC 5 cut(s) 471, 816, 853, 997, 1120
SfcI CTRYAG 1 cut(s) 762
SfoI GGCGCC 1 cut(s) 431
Sfr274I CTCGAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 743
SlaI CTCGAG 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 2 cut(s) 452, 666
SmoI CTYRAG 2 cut(s) 452, 666
Sse9I AATT 5 cut(s) 57, 255, 547, 786, 945
SsiI CCGC 3 cut(s) 152, 314, 653
SspDI GGCGCC 1 cut(s) 429
SspI AATATT 1 cut(s) 682
SstI GAGCTC 1 cut(s) 660
StyD4I CCNGG 2 cut(s) 738, 751
StyI CCWWGG 1 cut(s) 1110
TaqI TCGA 3 cut(s) 12, 123, 667
TasI AATT 5 cut(s) 57, 255, 547, 786, 945
TatI WGTACW 1 cut(s) 591
TfiI GAWTC 2 cut(s) 308, 541
Tru1I TTAA 2 cut(s) 516, 1146
Tru9I TTAA 2 cut(s) 516, 1146
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 3 cut(s) 205, 208, 217
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 167, 437, 1077
TspGWI ACGGA 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 743
XagI CCTNNNNNAGG 1 cut(s) 978
XapI RAATTY 2 cut(s) 57, 786
XhoI CTCGAG 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.