Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

27496308 .. 27500876

Gene Structure 4569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0262200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGCAAACAGAAAATACGAGTATGTCAAGTCATACGAAGTTGAAGATGAGAACTTCTTGCCTAATTTGACTGTTGTTCGAATTGATGGCCGTGATTTTCGAAGGTTTGCAGAAGTGCATGAGTTTGAGAAACCAAATGACGAGATAGCATTGAATTTGATGAATTCATGCGCAGTTTCTGTGTCGGAGGAGTTTCCAGACATCGTTTTTTCATATGGATTCAGTGACGAGTTCAGCTTTATCTTCAAGAAGACGTCCAAGTTTCACCAGAGGCGTGCCAGCAAAGTAGAGTCTATTATAGTATCTTTCTTCAGCTCAGTATATGTAATGAAATGGAGAGAATTCTTCCCTCATAAGGAGCTAAGATACCCCCCCTCATTTCATGCAAAGGTTATATCCTGTGGTGCAATAGAAGTCCTTCAGTCTTATCTTTTGTGGAGACAAAATGATTGTCATACAAATAACCTGTGTAATACTTGCCTATGGGAGCTAATAATTAAAGGTGGAAAGACTGAAAGCGAAGGACTAGAGTTACTAGAGGGCACCAGTAAAGAAGAGAAAAACAACCTTCTTTTTGAAAAGTTTGAGATCAATTACCAAAAGTTAAATGAAATGTTTCGTCAAGGATCCTGCATTTTGAAAACTGAGGTGATTGACGTAGTAAAGCACAATGAGAATGGTTCTCCTGTCCGGAGACTTACGAAAAAGTTAAGAATAGTCCATTCAAAGAATATAGCGGGGATAAGCTTTTGGAACAAGCACAAATGTCTTCGGAATGAGCTCGGTAGCTTCTCTAAGGACATTGGAAAAGTTGAACCAGATTTTCTCAAAGTCCTTCCATTTAATGTTAGACTGCTAAGACTTAGGAATGATGCGTACTGTTCTCTTTGGGCTTTGGACAGGTTTTCTGATGTTCATGAATTTGTGAAGCCAAATGATGAGCAGGCTCTCAAGCTTATGAATTCTTGTGCAGTGGGTGTGGTAAAAGAGTTTCAAGACACAGTGTTTGCCTATGGTGTCAGTGATGAATACAGCTTTGTATTGAAGAAAGACTCTCAGTTCTATCAAAGGCGAGCAAGTAAAATAGTATCTGTCATGGTGTCACTCTTTACTTCCATGTACACAATGAAATGGAAAGATTTCTTCCCTGAGAGAGATTTGAAGTACCCTCCTTATTTTGATGGCCGCGCTGTATGCTATCCATCATCTGAAATTCTTCGAGATTATCTGGCGTGGAGACAAGTTGATTGCCATATCAACAATCAATACAATACTTGTTTTTGGCAGCTTGTTAAGTCTGGAAAGAGCAAAAGTGAAGCCCAGAATTTTCTGAAGGGTACTCTAGCAGGTGACAAAGATAAACTGCTCAAGCAATTTGGTATTGACTACAGCAAATTGCCTGTCATGTTCCGCCAAGGTTCCTCCACCTTCTGGGACAAGGTTTCTTTCTATCCTTATTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

488

Amino Acids

57.31

Weight (kDa)

8.69

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thg1	PF04446	6 - 133	1.7e-45	tRNAHis guanylyltransferase
Thg1C	PF14413	139 - 223	8.5e-29	Thg1 C terminal domain
Thg1	PF04446	300 - 401	2e-40	tRNAHis guanylyltransferase
Thg1C	PF14413	405 - 480	5.2e-32	Thg1 C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1337
AatII	GACGTC	1 cut(s)	257
Acc16I	TGCGCA	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	1337
AccB1I	GGYRCC	1 cut(s)	542
AccB7I	CCANNNNNTGG	1 cut(s)	1431
AccII	CGCG	1 cut(s)	1188
AccIII	TCCGGA	1 cut(s)	690
AciI	CCGC	3 cut(s)	737, 1186, 1411
AclWI	GGATC	2 cut(s)	621, 634
AcoI	YGGCCR	2 cut(s)	88, 1183
AcsI	RAATTY	7 cut(s)	154, 163, 341, 920, 961, 1212, 1324
AcuI	CTGAAG	3 cut(s)	295, 404, 1352
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	4 cut(s)	878, 1121, 1166, 1339
AfiI	CCNNNNNNNGG	2 cut(s)	355, 1431
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	3 cut(s)	433, 688, 1231
AlwI	GGATC	2 cut(s)	621, 634
AlwNI	CAGNNNCTG	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	690
AoxI	GGCC	2 cut(s)	88, 1183
ApeKI	GCWGC	1 cut(s)	1285
ApoI	RAATTY	7 cut(s)	154, 163, 341, 920, 961, 1212, 1324
ArsI	GACNNNNNNTTYG	6 cut(s)	436, 468, 989, 1021, 1386, 1418
Asp700I	GAANNNNTTC	4 cut(s)	417, 615, 1139, 1215
AspLEI	GCGC	2 cut(s)	173, 1190
AsuHPI	GGTGA	3 cut(s)	257, 661, 1361
AsuII	TTCGAA	2 cut(s)	79, 100
BaeGI	GKGCMC	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	783
BbsI	GAAGAC	2 cut(s)	257, 761
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	1 cut(s)	1297
BccI	CCATC	3 cut(s)	80, 1175, 1210
BceAI	ACGGC	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	433, 688, 1231
BfaI	CTAG	3 cut(s)	527, 536, 1343
BfmI	CTRYAG	1 cut(s)	1387
BfuAI	ACCTGC	1 cut(s)	1337
BisI	GCNGC	2 cut(s)	1186, 1286
BlsI	GCNGC	2 cut(s)	1187, 1287
BmiI	GGNNCC	3 cut(s)	544, 628, 1420
BmsI	GCATC	1 cut(s)	862
BpiI	GAAGAC	2 cut(s)	257, 761
Bpu14I	TTCGAA	2 cut(s)	79, 100
BpuEI	CTTGAG	2 cut(s)	935, 1352
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	1414
BsaWI	WCCGGW	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 1431
Bse1I	ACTGG	1 cut(s)	546
BseAI	TCCGGA	1 cut(s)	690
BseDI	CCNNGG	1 cut(s)	1414
BseLI	CCNNNNNNNGG	2 cut(s)	355, 1431
BseMII	CTCAG	4 cut(s)	330, 636, 1070, 1140
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	1297
BsgI	GTGCAG	1 cut(s)	990
Bsh1236I	CGCG	1 cut(s)	1188
BshFI	GGCC	2 cut(s)	90, 1185
BshNI	GGYRCC	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	1 cut(s)	691
BslFI	GGGAC	1 cut(s)	1448
BslI	CCNNNNNNNGG	2 cut(s)	355, 1431
BsmAI	GTCTC	3 cut(s)	433, 688, 1231
BsmFI	GGGAC	1 cut(s)	1448
BsnI	GGCC	2 cut(s)	90, 1185
Bsp119I	TTCGAA	2 cut(s)	79, 100
Bsp1286I	GDGCHC	2 cut(s)	545, 783
Bsp13I	TCCGGA	1 cut(s)	690
Bsp1407I	TGTACA	1 cut(s)	1119
Bsp143I	GATC	2 cut(s)	588, 626
BspACI	CCGC	3 cut(s)	737, 1186, 1411
BspANI	GGCC	2 cut(s)	90, 1185
BspCNI	CTCAG	4 cut(s)	329, 637, 1069, 1141
BspEI	TCCGGA	1 cut(s)	690
BspFNI	CGCG	1 cut(s)	1188
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	3 cut(s)	544, 628, 1420
BspMI	ACCTGC	1 cut(s)	1337
BspPI	GGATC	2 cut(s)	621, 634
BspT104I	TTCGAA	2 cut(s)	79, 100
BspT107I	GGYRCC	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	1119
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	1 cut(s)	1414
BssMI	GATC	2 cut(s)	588, 626
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	1414
Bst4CI	ACNGT	3 cut(s)	73, 881, 1003
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	1119
BstBI	TTCGAA	2 cut(s)	79, 100
BstC8I	GCNNGC	4 cut(s)	276, 280, 945, 1074
BstDEI	CTNAG	8 cut(s)	316, 362, 645, 795, 857, 863, 1056, 1149
BstFNI	CGCG	1 cut(s)	1188
BstHHI	GCGC	2 cut(s)	173, 1190
BstKTI	GATC	2 cut(s)	591, 629
BstMAI	GTCTC	3 cut(s)	433, 688, 1231
BstMBI	GATC	2 cut(s)	588, 626
BstMWI	GCNNNNNNNGC	1 cut(s)	1194
BstSFI	CTRYAG	1 cut(s)	1387
BstSLI	GKGCMC	1 cut(s)	545
BstUI	CGCG	1 cut(s)	1188
BstV1I	GCAGC	1 cut(s)	1297
BstV2I	GAAGAC	2 cut(s)	257, 761
BstX2I	RGATCY	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	90, 1185
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	4 cut(s)	229, 978, 1008, 1027
BveI	ACCTGC	1 cut(s)	1337
Cac8I	GCNNGC	4 cut(s)	276, 280, 945, 1074
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	2 cut(s)	173, 1190
Csp6I	GTAC	4 cut(s)	877, 1120, 1165, 1338
CviAII	CATG	8 cut(s)	119, 168, 383, 917, 1096, 1117, 1405, 1464
CviQI	GTAC	4 cut(s)	877, 1120, 1165, 1338
DdeI	CTNAG	8 cut(s)	316, 362, 645, 795, 857, 863, 1056, 1149
DpnI	GATC	2 cut(s)	590, 628
DpnII	GATC	2 cut(s)	588, 626
EaeI	YGGCCR	2 cut(s)	88, 1183
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	1400
Ecl136II	GAGCTC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	1414
Eco24I	GRGCYC	1 cut(s)	783
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	3 cut(s)	295, 404, 1352
EcoICRI	GAGCTC	1 cut(s)	781
EcoRI	GAATTC	3 cut(s)	163, 341, 961
EcoT14I	CCWWGG	1 cut(s)	1414
EcoT38I	GRGCYC	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	1414
FaeI	CATG	8 cut(s)	122, 171, 386, 920, 1099, 1120, 1408, 1467
FaqI	GGGAC	1 cut(s)	1448
FatI	CATG	8 cut(s)	118, 167, 382, 916, 1095, 1116, 1404, 1463
FauI	CCCGC	1 cut(s)	730
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	1186, 1286
FriOI	GRGCYC	1 cut(s)	783
Fsp4HI	GCNGC	2 cut(s)	1186, 1286
FspBI	CTAG	3 cut(s)	527, 536, 1343
FspI	TGCGCA	1 cut(s)	172
GlaI	GCGC	2 cut(s)	172, 1189
GluI	GCNGC	2 cut(s)	1186, 1286
HaeIII	GGCC	2 cut(s)	90, 1185
HapII	CCGG	1 cut(s)	691
HhaI	GCGC	2 cut(s)	173, 1190
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	8 cut(s)	122, 171, 386, 920, 1099, 1120, 1408, 1467
Hin6I	GCGC	2 cut(s)	171, 1188
HinP1I	GCGC	2 cut(s)	171, 1188
HindIII	AAGCTT	2 cut(s)	745, 953
HinfI	GANTC	3 cut(s)	219, 290, 1052
HpaII	CCGG	1 cut(s)	691
HphI	GGTGA	3 cut(s)	257, 661, 1361
Hpy166II	GTNNAC	1 cut(s)	1122
Hpy188I	TCNGA	5 cut(s)	187, 774, 910, 1210, 1332
Hpy188III	TCNNGA	7 cut(s)	197, 247, 691, 917, 995, 1220, 1299
Hpy8I	GTNNAC	1 cut(s)	1122
HpyAV	CCTTC	7 cut(s)	96, 428, 515, 578, 845, 1327, 1438
HpyCH4III	ACNGT	3 cut(s)	73, 881, 1003
HpyCH4IV	ACGT	2 cut(s)	254, 657
HpyCH4V	TGCA	6 cut(s)	110, 118, 386, 407, 633, 971
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1194
HpyF3I	CTNAG	8 cut(s)	316, 362, 645, 795, 857, 863, 1056, 1149
HpySE526I	ACGT	2 cut(s)	254, 657
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	8 cut(s)	122, 171, 386, 920, 1099, 1120, 1408, 1467
HspAI	GCGC	2 cut(s)	171, 1188
Kpn2I	TCCGGA	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	588, 626
LmnI	GCTCC	2 cut(s)	358, 487
Lsp1109I	GCAGC	1 cut(s)	1297
LweI	GCATC	1 cut(s)	862
MaeI	CTAG	3 cut(s)	527, 536, 1343
MaeII	ACGT	2 cut(s)	254, 657
MaeIII	GTNAC	4 cut(s)	224, 531, 1101, 1349
MalI	GATC	2 cut(s)	590, 628
MboI	GATC	2 cut(s)	588, 626
MflI	RGATCY	1 cut(s)	626
MhlI	GDGCHC	2 cut(s)	545, 783
MlyI	GAGTC	2 cut(s)	299, 1046
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	8 cut(s)	181, 264, 360, 385, 532, 640, 1179, 1432
MroI	TCCGGA	1 cut(s)	690
MroXI	GAANNNNTTC	4 cut(s)	417, 615, 1139, 1215
MseI	TTAA	5 cut(s)	498, 605, 710, 843, 1293
MspI	CCGG	1 cut(s)	691
MvnI	CGCG	1 cut(s)	1188
MwoI	GCNNNNNNNGC	1 cut(s)	1194
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	2 cut(s)	588, 626
NlaIII	CATG	8 cut(s)	122, 171, 386, 920, 1099, 1120, 1408, 1467
NlaIV	GGNNCC	3 cut(s)	544, 628, 1420
NmuCI	GTSAC	3 cut(s)	224, 1101, 1349
NsbI	TGCGCA	1 cut(s)	172
NspV	TTCGAA	2 cut(s)	79, 100
PagI	TCATGA	1 cut(s)	916
PaqCI	CACCTGC	1 cut(s)	1337
PdmI	GAANNNNTTC	4 cut(s)	417, 615, 1139, 1215
PfeI	GAWTC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	1431
PkrI	GCNGC	2 cut(s)	1187, 1287
PleI	GAGTC	2 cut(s)	298, 1046
PpsI	GAGTC	2 cut(s)	298, 1046
Psp124BI	GAGCTC	1 cut(s)	783
PspN4I	GGNNCC	3 cut(s)	544, 628, 1420
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	626
RsaI	GTAC	4 cut(s)	878, 1121, 1166, 1339
RsaNI	GTAC	4 cut(s)	877, 1120, 1165, 1338
SacI	GAGCTC	1 cut(s)	783
SaqAI	TTAA	5 cut(s)	498, 605, 710, 843, 1293
SatI	GCNGC	2 cut(s)	1186, 1286
Sau3AI	GATC	2 cut(s)	588, 626
SchI	GAGTC	2 cut(s)	299, 1046
SduI	GDGCHC	2 cut(s)	545, 783
SfaNI	GCATC	1 cut(s)	862
SfcI	CTRYAG	1 cut(s)	1387
SfuI	TTCGAA	2 cut(s)	79, 100
SmlI	CTYRAG	2 cut(s)	950, 1367
SmoI	CTYRAG	2 cut(s)	950, 1367
SsiI	CCGC	3 cut(s)	737, 1186, 1411
SspMI	CTAG	3 cut(s)	527, 536, 1343
SstI	GAGCTC	1 cut(s)	783
StyI	CCWWGG	1 cut(s)	1414
TaaI	ACNGT	3 cut(s)	73, 881, 1003
TaiI	ACGT	2 cut(s)	257, 660
TaqI	TCGA	3 cut(s)	79, 100, 1219
TatI	WGTACW	1 cut(s)	1119
TauI	GCSGC	1 cut(s)	1188
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	5 cut(s)	498, 605, 710, 843, 1293
Tru9I	TTAA	5 cut(s)	498, 605, 710, 843, 1293
TscAI	CASTG	4 cut(s)	229, 978, 1008, 1027
TseFI	GTSAC	3 cut(s)	224, 1101, 1349
TseI	GCWGC	1 cut(s)	1285
Tsp45I	GTSAC	3 cut(s)	224, 1101, 1349
TspRI	CASTG	4 cut(s)	229, 978, 1008, 1027
Van91I	CCANNNNNTGG	1 cut(s)	1431
XapI	RAATTY	7 cut(s)	154, 163, 341, 920, 961, 1212, 1324
XmnI	GAANNNNTTC	4 cut(s)	417, 615, 1139, 1215
XspI	CTAG	3 cut(s)	527, 536, 1343
ZraI	GACGTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.