Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000264.1

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

123671 .. 125498

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000264.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgaggattttatgctggaacgtccaaggtatgggcagggcccggacattccgtgatttgaaggacttcctatttgttcacatgccggatttaatttttcttattgagacaaacatgactgaagctcaaatggggaagttgaaaaacaaggctaggaatggatggatgtcgtccttcgactcatttcctaatgaggacgaaccccagaacctatcccccaccattcaacctttcaacgacgatggttacatgggctacgacccgtcgttcaaccctcccacccaagtcgacttctcctcctccgacccaccacctccgcctcaaccactccactcggattttcatgacgatgttgttcttcccaacgagcagcagcagcagcagcactcacctgacccctacggaggaggagggtttggaattgaagcctccaaccccaaccccaatgactacgcgttgccatttgattcggcggtttctgagagcaatgcagatggtaataatgagggtgacattttcacctccgatgggccggtgcttccgcctccagagcaaatgcgcgaggaaggctttgcacgccgtgagtggcgccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

198

Amino Acids

22.34

Weight (kDa)

4.35

Isoelectric Point (pI)

69.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	588
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	2 cut(s)	455, 561
AciI	CCGC	3 cut(s)	317, 473, 542
AcuI	CTGAAG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	589
AdeI	CACNNNGTG	1 cut(s)	581
AfiI	CCNNNNNNNGG	3 cut(s)	31, 404, 528
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	6 cut(s)	61, 142, 227, 235, 271, 425
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	39, 530
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	5 cut(s)	370, 373, 376, 379, 382
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	561, 591
AspS9I	GGNCC	3 cut(s)	39, 40, 530
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	381, 511, 521
BaeGI	GKGCMC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	588
BanII	GRGCYC	1 cut(s)	43
BbvI	GCAGC	5 cut(s)	382, 385, 388, 391, 394
BccI	CCATC	4 cut(s)	156, 236, 488, 521
BceAI	ACGGC	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	592
BisI	GCNGC	5 cut(s)	371, 374, 377, 380, 383
BlsI	GCNGC	5 cut(s)	372, 375, 378, 381, 384
Bme1390I	CCNGG	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	39, 40, 530
BmiI	GGNNCC	2 cut(s)	41, 590
BmrFI	CCNGG	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	589
BsaJI	CCNNGG	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 404, 528
Bse118I	RCCGGY	2 cut(s)	532, 591
Bse3DI	GCAATG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	167, 171
BseLI	CCNNNNNNNGG	3 cut(s)	31, 404, 528
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	471
BseRI	GAGGAG	4 cut(s)	286, 289, 420, 423
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	5 cut(s)	382, 385, 388, 391, 394
Bsh1236I	CGCG	2 cut(s)	455, 561
BshFI	GGCC	2 cut(s)	41, 532
BshNI	GGYRCC	1 cut(s)	588
BsiSI	CCGG	4 cut(s)	43, 86, 533, 592
BslI	CCNNNNNNNGG	3 cut(s)	31, 404, 528
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	41, 532
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	43
BspACI	CCGC	3 cut(s)	317, 473, 542
BspANI	GGCC	2 cut(s)	41, 532
BspCNI	CTCAG	1 cut(s)	472
BspFNI	CGCG	2 cut(s)	455, 561
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	41, 590
BspT107I	GGYRCC	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	2 cut(s)	532, 591
BssAI	RCCGGY	2 cut(s)	532, 591
BssECI	CCNNGG	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	589
BssT1I	CCWWGG	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	167, 171
BstFNI	CGCG	2 cut(s)	455, 561
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	2 cut(s)	561, 591
BstMAI	GTCTC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	6 cut(s)	376, 379, 382, 550, 567, 576
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	43
BstUI	CGCG	2 cut(s)	455, 561
BstV1I	GCAGC	5 cut(s)	382, 385, 388, 391, 394
BsuRI	GGCC	2 cut(s)	41, 532
BtsCI	GGATG	2 cut(s)	167, 171
Cac8I	GCNNGC	1 cut(s)	577
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	561, 591
Cfr10I	RCCGGY	2 cut(s)	532, 591
Cfr13I	GGNCC	3 cut(s)	39, 40, 530
CviAII	CATG	4 cut(s)	82, 115, 250, 344
CviJI	RGCY	7 cut(s)	41, 125, 152, 255, 428, 532, 570
CviKI_1	RGCY	7 cut(s)	41, 125, 152, 255, 428, 532, 570
DdeI	CTNAG	1 cut(s)	480
DinI	GGCGCC	1 cut(s)	590
DraIII	CACNNNGTG	1 cut(s)	581
EciI	GGCGGA	2 cut(s)	306, 531
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	590
EheI	GGCGCC	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	4 cut(s)	85, 118, 253, 347
FaiI	YATR	6 cut(s)	13, 32, 83, 116, 251, 345
FatI	CATG	4 cut(s)	81, 114, 249, 343
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	5 cut(s)	371, 374, 377, 380, 383
FokI	GGATG	2 cut(s)	174, 178
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	5 cut(s)	371, 374, 377, 380, 383
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	2 cut(s)	560, 590
GluI	GCNGC	5 cut(s)	371, 374, 377, 380, 383
GsuI	CTGGAG	1 cut(s)	531
HaeII	RGCGCY	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	41, 532
HapII	CCGG	4 cut(s)	43, 86, 533, 592
HhaI	GCGC	2 cut(s)	561, 591
Hin1I	GRCGYC	1 cut(s)	589
Hin1II	CATG	4 cut(s)	85, 118, 253, 347
Hin6I	GCGC	2 cut(s)	559, 589
HinP1I	GCGC	2 cut(s)	559, 589
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	179, 467
HpaII	CCGG	4 cut(s)	43, 86, 533, 592
HphI	GGTGA	3 cut(s)	381, 511, 521
Hpy166II	GTNNAC	2 cut(s)	79, 289
Hpy188I	TCNGA	4 cut(s)	304, 337, 481, 526
Hpy188III	TCNNGA	2 cut(s)	344, 548
Hpy8I	GTNNAC	2 cut(s)	79, 289
Hpy99I	CGWCG	2 cut(s)	242, 268
HpyAV	CCTTC	3 cut(s)	55, 184, 560
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	491, 575
HpyF10VI	GCNNNNNNNGC	6 cut(s)	376, 379, 382, 550, 567, 576
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	589
Hsp92II	CATG	4 cut(s)	85, 118, 253, 347
HspAI	GCGC	2 cut(s)	559, 589
KasI	GGCGCC	1 cut(s)	588
LpnPI	CCDG	7 cut(s)	22, 56, 99, 218, 405, 546, 561
Lsp1109I	GCAGC	5 cut(s)	382, 385, 388, 391, 394
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	245, 509
MboII	GAAGA	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	2 cut(s)	93, 420
MluI	ACGCGT	1 cut(s)	453
Mly113I	GGCGCC	1 cut(s)	589
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	327, 456
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	4 cut(s)	43, 86, 533, 592
MspR9I	CCNGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	455, 561
MwoI	GCNNNNNNNGC	6 cut(s)	376, 379, 382, 550, 567, 576
NarI	GGCGCC	1 cut(s)	589
NciI	CCSGG	1 cut(s)	43
NlaIII	CATG	4 cut(s)	85, 118, 253, 347
NlaIV	GGNNCC	2 cut(s)	41, 590
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	1 cut(s)	85
PagI	TCATGA	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	372, 375, 378, 381, 384
PleI	GAGTC	1 cut(s)	173
PluTI	GGCGCC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	41, 590
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	3 cut(s)	39, 40, 530
RseI	CAYNNNNRTG	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	5 cut(s)	371, 374, 377, 380, 383
Sau96I	GGNCC	3 cut(s)	39, 40, 530
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	8 cut(s)	24, 31, 127, 213, 232, 316, 394, 524
SfoI	GGCGCC	1 cut(s)	590
SgrAI	CRCCGGYG	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	93, 420
SsiI	CCGC	3 cut(s)	317, 473, 542
SspDI	GGCGCC	1 cut(s)	588
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	177, 288
TasI	AATT	2 cut(s)	93, 420
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	5 cut(s)	370, 373, 376, 379, 382
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	2 cut(s)	41, 417
Van91I	CCANNNNNTGG	1 cut(s)	31
XceI	RCATGY	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.