Prupe.3G155800_v2.0.a1

Clathrin light chain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
17394142 .. 17396475
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G155800.1

Sequence Viewer

Length: 1269 bp
ATGTCGTCCTTCGACTCCTTCCCCAACGACGACGAAACCCACCACGACCCCACCACCCGCCCGTTCGACGACGATGGCTACATGGGCTACGACCCCCGCCTCTCCTCCCAGCGCTACGACTCGTCGTTCAACCCTCCCACCCACGACGACGACGACTTCTCCTCTTCCGCCGTCGACCCGGCGCCCCCTCCCCTCCACATTGATTTCCAAGACGACGTCGTTCTCCCCGGCGGCCATAGCATTGACCAGCAGTCGCCCGAAATCTACGGCTTCGGCATTTCCACCCCTAACCCCGACTACGTGTCGCCGTTTGATTCGGCGGTGCCCGAGGACAATGACGTAGGTGGTATGGGCGGAGATGGTGGTGGTGGTGGTGGCGGCGGTGACGATGGAGACATTTTCGCCTCGAGTGAGCCGGTGCTGCCTCCACCTGAGGAAATGCGAGAGGAAGGCTTTGCTCGGCGCGAATGGCGTCGTCTAAATGTCATCCATCTTGAAGAAAAGGAGCAAAGAGAAAGGGAGATGCGGAACCAGATTATTGAGGAAGCTGAGGAATTTAAACGGGCTTTTTATGAGAAACGAAAGCTCAATTGTGAGACTAACAGGGCTCACAACAGAGAAAGGGAGAAGCTTTACCTGGTCAACCAAGAGAAGTTCCACAAAGAAGCTGACAAACATTATTGGAAAGCAATAGCGGAGCTGATTCCTCGTGAGGTCCCTAATATTGAGAAGAAGAGAGGGAAGAAAGATCCTGATAAGAAGCCTTCAGTGCTGATCATCCAGGGTCCCAAACCTGGGAAACCAACTGATCTTTCAAGGATGCGGCAAATTTTCATTAAGCTGAAACAGAACCCTCCACCGCACATGATGCCTCCTCCCCCACCTGCCAAAGATGGTAAGGATTCCAAGGAAGGGAAGAATGCACAGGATTCTAAGGAAGGAAAGGATGCAAAGGATTCCAAGGAAGGAAAGGATGCAAAAGATGCAAAGGAAGGAAACGATGCAAAGGAAGGAAACGATGCCAAGGGAGGAGATGATGCAAAGGATTCCAAGGATGCAAATGATTCAAAGGATTCCAAGGAAGGAAAGGATGCCAAGAATGGAAAAACTAATTCGCCCATTGCAGCGGGTGCTGCAGCTGCAATCGCACCTGTTTCACCTGCCAAAGATGTTACCGCTAATACCACTCCCAACTCATCAAAAGCAGAGACCCCGGCTGAACACGAGGGTGAGCAACCTGCAGAAACCAGGCCAACTCCTGCAGAGTGA

Protein Analysis

423

Amino Acids

46.43

Weight (kDa)

4.99

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 892, 1168
AatII GACGTC 1 cut(s) 219
Acc36I ACCTGC 3 cut(s) 892, 1168, 1246
AccB1I GGYRCC 2 cut(s) 181, 322
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 465
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 2 cut(s) 554, 828
AcuI CTGAAG 1 cut(s) 750
AcyI GRCGYC 3 cut(s) 182, 216, 472
AfeI AGCGCT 1 cut(s) 113
AfiI CCNNNNNNNGG 3 cut(s) 794, 795, 912
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 4 cut(s) 130, 497, 816, 1068
AhdI GACNNNNNGTC 2 cut(s) 250, 301
AjnI CCWGG 4 cut(s) 636, 780, 793, 1247
AjuI GAANNNNNNNTTGG 2 cut(s) 796, 828
AleI CACNNNNGTG 1 cut(s) 1227
AluBI AGCT 7 cut(s) 548, 586, 631, 668, 700, 841, 1139
AluI AGCT 7 cut(s) 548, 586, 631, 668, 700, 841, 1139
Alw26I GTCTC 3 cut(s) 387, 590, 1202
AlwI GGATC 1 cut(s) 743
Ama87I CYCGRG 2 cut(s) 326, 406
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 2 cut(s) 232, 1250
ApeKI GCWGC 5 cut(s) 421, 1124, 1133, 1136, 1139
ApoI RAATTY 2 cut(s) 554, 828
AspLEI GCGC 3 cut(s) 114, 184, 465
AspS9I GGNCC 2 cut(s) 715, 785
AsuC2I CCSGG 3 cut(s) 179, 228, 1214
AsuHPI GGTGA 3 cut(s) 395, 1149, 1241
AvaI CYCGRG 2 cut(s) 326, 406
AvaII GGWCC 2 cut(s) 715, 785
AxyI CCTNAGG 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 327
BanI GGYRCC 2 cut(s) 181, 322
BanII GRGCYC 1 cut(s) 610
BauI CACGAG 2 cut(s) 708, 1223
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 5 cut(s) 408, 1120, 1126, 1136, 1148
BccI CCATC 5 cut(s) 68, 353, 383, 498, 887
BceAI ACGGC 3 cut(s) 155, 283, 292
BciT130I CCWGG 4 cut(s) 638, 782, 795, 1249
BclI TGATCA 1 cut(s) 774
BcnI CCSGG 3 cut(s) 179, 228, 1214
BcoDI GTCTC 3 cut(s) 387, 590, 1202
BfmI CTRYAG 3 cut(s) 1134, 1239, 1260
BfoI RGCGCY 2 cut(s) 115, 185
BfuAI ACCTGC 3 cut(s) 892, 1168, 1246
BisI GCNGC 8 cut(s) 232, 379, 422, 824, 1125, 1134, 1137, 1140
BlsI GCNGC 8 cut(s) 233, 380, 423, 825, 1126, 1135, 1138, 1141
Bme1390I CCNGG 7 cut(s) 179, 228, 638, 782, 795, 1214, 1249
Bme18I GGWCC 2 cut(s) 715, 785
BmeRI GACNNNNNGTC 2 cut(s) 250, 301
BmeT110I CYCGRG 2 cut(s) 326, 406
BmgT120I GGNCC 2 cut(s) 715, 785
BmiI GGNNCC 6 cut(s) 183, 324, 530, 717, 786, 787
BmrFI CCNGG 7 cut(s) 179, 228, 638, 782, 795, 1214, 1249
Bpu10I CCTNAGC 1 cut(s) 549
BpuMI CCSGG 3 cut(s) 179, 228, 1214
BsaAI YACGTR 1 cut(s) 301
BsaHI GRCGYC 3 cut(s) 182, 216, 472
BsaI GGTCTC 1 cut(s) 1202
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 794, 795, 912
Bse118I RCCGGY 1 cut(s) 415
Bse21I CCTNAGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 1119
BseBI CCWGG 4 cut(s) 638, 782, 795, 1249
BseGI GGATG 7 cut(s) 486, 777, 825, 952, 979, 1060, 1096
BseLI CCNNNNNNNGG 3 cut(s) 794, 795, 912
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 2 cut(s) 423, 540
BseRI GAGGAG 4 cut(s) 94, 151, 864, 1044
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 5 cut(s) 408, 1120, 1126, 1136, 1148
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 2 cut(s) 234, 1252
BshNI GGYRCC 2 cut(s) 181, 322
BsiHKCI CYCGRG 2 cut(s) 326, 406
BsiSI CCGG 4 cut(s) 179, 228, 416, 1214
BslFI GGGAC 2 cut(s) 701, 771
BslI CCNNNNNNNGG 3 cut(s) 794, 795, 912
BsmAI GTCTC 3 cut(s) 387, 590, 1202
BsmFI GGGAC 2 cut(s) 701, 771
BsmI GAATGC 1 cut(s) 925
BsnI GGCC 2 cut(s) 234, 1252
Bso31I GGTCTC 1 cut(s) 1202
BsoBI CYCGRG 2 cut(s) 326, 406
Bsp1286I GDGCHC 2 cut(s) 327, 610
Bsp143I GATC 3 cut(s) 748, 774, 808
BspANI GGCC 2 cut(s) 234, 1252
BspCNI CTCAG 2 cut(s) 424, 541
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 6 cut(s) 183, 324, 530, 717, 786, 787
BspMAI CTGCAG 3 cut(s) 1138, 1243, 1264
BspMI ACCTGC 3 cut(s) 892, 1168, 1246
BspPI GGATC 1 cut(s) 743
BspT107I GGYRCC 2 cut(s) 181, 322
BspTNI GGTCTC 1 cut(s) 1202
BsrDI GCAATG 1 cut(s) 1119
BsrFI RCCGGY 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 415
BssMI GATC 3 cut(s) 748, 774, 808
BssNI GRCGYC 3 cut(s) 182, 216, 472
BssSI CACGAG 2 cut(s) 708, 1223
BssT1I CCWWGG 5 cut(s) 906, 960, 1023, 1050, 1077
Bst2BI CACGAG 2 cut(s) 708, 1223
Bst2UI CCWGG 4 cut(s) 638, 782, 795, 1249
Bst6I CTCTTC 2 cut(s) 169, 728
BstACI GRCGYC 3 cut(s) 182, 216, 472
BstAPI GCANNNNNTGC 3 cut(s) 868, 983, 1130
BstBAI YACGTR 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 432, 549, 933
BstF5I GGATG 7 cut(s) 486, 777, 825, 952, 979, 1060, 1096
BstFNI CGCG 1 cut(s) 465
BstH2I RGCGCY 2 cut(s) 115, 185
BstHHI GCGC 3 cut(s) 114, 184, 465
BstKTI GATC 3 cut(s) 751, 777, 811
BstMAI GTCTC 3 cut(s) 387, 590, 1202
BstMBI GATC 3 cut(s) 748, 774, 808
BstNI CCWGG 4 cut(s) 638, 782, 795, 1249
BstSCI CCNGG 7 cut(s) 177, 226, 636, 780, 793, 1212, 1247
BstSFI CTRYAG 3 cut(s) 1134, 1239, 1260
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 5 cut(s) 408, 1120, 1126, 1136, 1148
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 2 cut(s) 234, 1252
BtsCI GGATG 7 cut(s) 486, 777, 825, 952, 979, 1060, 1096
BtsIMutI CAGTG 1 cut(s) 774
BveI ACCTGC 3 cut(s) 892, 1168, 1246
CfoI GCGC 3 cut(s) 114, 184, 465
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 715, 785
CseI GACGC 1 cut(s) 461
CsiI ACCWGGT 1 cut(s) 636
CviAII CATG 2 cut(s) 82, 865
DdeI CTNAG 3 cut(s) 432, 549, 933
DinI GGCGCC 1 cut(s) 183
DpnI GATC 3 cut(s) 750, 776, 810
DpnII GATC 3 cut(s) 748, 774, 808
DraI TTTAAA 1 cut(s) 559
DriI GACNNNNNGTC 2 cut(s) 250, 301
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 169, 728
Eam1105I GACNNNNNGTC 2 cut(s) 250, 301
EarI CTCTTC 2 cut(s) 169, 728
EciI GGCGGA 2 cut(s) 157, 369
Eco130I CCWWGG 5 cut(s) 906, 960, 1023, 1050, 1077
Eco24I GRGCYC 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 1202
Eco47I GGWCC 2 cut(s) 715, 785
Eco47III AGCGCT 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 432
Eco88I CYCGRG 2 cut(s) 326, 406
EcoO109I RGGNCCY 2 cut(s) 715, 785
EcoRII CCWGG 4 cut(s) 636, 780, 793, 1247
EcoT14I CCWWGG 5 cut(s) 906, 960, 1023, 1050, 1077
EcoT38I GRGCYC 1 cut(s) 610
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
ErhI CCWWGG 5 cut(s) 906, 960, 1023, 1050, 1077
FaeI CATG 2 cut(s) 85, 868
FaiI YATR 5 cut(s) 83, 237, 350, 573, 866
FaqI GGGAC 2 cut(s) 701, 771
FatI CATG 2 cut(s) 81, 864
FauI CCCGC 3 cut(s) 65, 104, 1120
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 8 cut(s) 232, 379, 422, 824, 1125, 1134, 1137, 1140
FokI GGATG 7 cut(s) 473, 764, 832, 959, 986, 1067, 1103
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 8 cut(s) 232, 379, 422, 824, 1125, 1134, 1137, 1140
GlaI GCGC 3 cut(s) 113, 183, 464
GluI GCNGC 8 cut(s) 232, 379, 422, 824, 1125, 1134, 1137, 1140
GsaI CCCAGC 1 cut(s) 112
HaeII RGCGCY 2 cut(s) 115, 185
HaeIII GGCC 2 cut(s) 234, 1252
HapII CCGG 4 cut(s) 179, 228, 416, 1214
HgaI GACGC 1 cut(s) 461
HhaI GCGC 3 cut(s) 114, 184, 465
Hin1I GRCGYC 3 cut(s) 182, 216, 472
Hin1II CATG 2 cut(s) 85, 868
Hin6I GCGC 3 cut(s) 112, 182, 463
HinP1I GCGC 3 cut(s) 112, 182, 463
HincII GTYRAC 2 cut(s) 175, 643
HindII GTYRAC 2 cut(s) 175, 643
HindIII AAGCTT 1 cut(s) 629
HpaII CCGG 4 cut(s) 179, 228, 416, 1214
HphI GGTGA 3 cut(s) 395, 1149, 1241
Hpy166II GTNNAC 2 cut(s) 175, 643
Hpy188III TCNNGA 3 cut(s) 494, 710, 752
Hpy8I GTNNAC 2 cut(s) 175, 643
HpyCH4IV ACGT 3 cut(s) 216, 300, 339
HpyF3I CTNAG 3 cut(s) 432, 549, 933
HpySE526I ACGT 3 cut(s) 216, 300, 339
Hsp92I GRCGYC 3 cut(s) 182, 216, 472
Hsp92II CATG 2 cut(s) 85, 868
HspAI GCGC 3 cut(s) 112, 182, 463
KasI GGCGCC 1 cut(s) 181
KflI GGGWCCC 1 cut(s) 785
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 3 cut(s) 748, 774, 808
LmnI GCTCC 2 cut(s) 505, 697
Lsp1109I GCAGC 5 cut(s) 408, 1120, 1126, 1136, 1148
MabI ACCWGGT 1 cut(s) 636
MaeII ACGT 3 cut(s) 216, 300, 339
MaeIII GTNAC 2 cut(s) 383, 1171
MalI GATC 3 cut(s) 750, 776, 810
MboI GATC 3 cut(s) 748, 774, 808
MboII GAAGA 6 cut(s) 156, 509, 742, 745, 754, 928
MfeI CAATTG 1 cut(s) 589
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 327, 610
MluCI AATT 4 cut(s) 554, 589, 828, 1111
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 2 cut(s) 8, 113
MseI TTAA 2 cut(s) 558, 837
MslI CAYNNNNRTG 1 cut(s) 1227
MspA1I CMGCKG 2 cut(s) 1127, 1139
MspI CCGG 4 cut(s) 179, 228, 416, 1214
MspR9I CCNGG 7 cut(s) 179, 228, 638, 782, 795, 1214, 1249
MunI CAATTG 1 cut(s) 589
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 4 cut(s) 638, 782, 795, 1249
MvnI CGCG 1 cut(s) 465
NarI GGCGCC 1 cut(s) 182
NciI CCSGG 3 cut(s) 179, 228, 1214
NdeII GATC 3 cut(s) 748, 774, 808
NlaIII CATG 2 cut(s) 85, 868
NlaIV GGNNCC 6 cut(s) 183, 324, 530, 717, 786, 787
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 383
OliI CACNNNNGTG 1 cut(s) 1227
PaeR7I CTCGAG 1 cut(s) 406
PaqCI CACCTGC 2 cut(s) 892, 1168
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 925
PfeI GAWTC 8 cut(s) 314, 703, 902, 929, 956, 1046, 1064, 1073
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 8 cut(s) 233, 380, 423, 825, 1126, 1135, 1138, 1141
PleI GAGTC 2 cut(s) 8, 113
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 2 cut(s) 8, 113
Ppu21I YACGTR 1 cut(s) 301
PpuMI RGGWCCY 2 cut(s) 715, 785
Psp5II RGGWCCY 2 cut(s) 715, 785
Psp6I CCWGG 4 cut(s) 636, 780, 793, 1247
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 4 cut(s) 636, 780, 793, 1247
PspN4I GGNNCC 6 cut(s) 183, 324, 530, 717, 786, 787
PspPI GGNCC 2 cut(s) 715, 785
PspPPI RGGWCCY 2 cut(s) 715, 785
PspXI VCTCGAGB 1 cut(s) 406
PstI CTGCAG 3 cut(s) 1138, 1243, 1264
PsuI RGATCY 1 cut(s) 748
PsyI GACNNNGTC 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 1139
RseI CAYNNNNRTG 1 cut(s) 1227
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 558, 837
SatI GCNGC 8 cut(s) 232, 379, 422, 824, 1125, 1134, 1137, 1140
Sau3AI GATC 3 cut(s) 748, 774, 808
Sau96I GGNCC 2 cut(s) 715, 785
SchI GAGTC 2 cut(s) 8, 113
ScrFI CCNGG 7 cut(s) 179, 228, 638, 782, 795, 1214, 1249
SduI GDGCHC 2 cut(s) 327, 610
SexAI ACCWGGT 1 cut(s) 636
SfcI CTRYAG 3 cut(s) 1134, 1239, 1260
SfoI GGCGCC 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 406
SinI GGWCC 2 cut(s) 715, 785
SlaI CTCGAG 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 1227
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 4 cut(s) 554, 589, 828, 1111
SspDI GGCGCC 1 cut(s) 181
SspI AATATT 1 cut(s) 724
StyD4I CCNGG 7 cut(s) 177, 226, 636, 780, 793, 1212, 1247
StyI CCWWGG 5 cut(s) 906, 960, 1023, 1050, 1077
TaiI ACGT 3 cut(s) 219, 303, 342
TaqI TCGA 4 cut(s) 12, 66, 174, 407
TasI AATT 4 cut(s) 554, 589, 828, 1111
TauI GCSGC 3 cut(s) 234, 381, 826
TfiI GAWTC 8 cut(s) 314, 703, 902, 929, 956, 1046, 1064, 1073
Tru1I TTAA 2 cut(s) 558, 837
Tru9I TTAA 2 cut(s) 558, 837
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 5 cut(s) 421, 1124, 1133, 1136, 1139
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 823
TspRI CASTG 1 cut(s) 774
Tth111I GACNNNGTC 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 715, 785
XapI RAATTY 2 cut(s) 554, 828
XhoI CTCGAG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 174
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.