Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

17018819 .. 17019178

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCGACAGATTTCCCTGAAGCTGAAACCGAACCCTCCACCACGCATGATGCCGCCACCAGCTGCCAAAGATGTCAAGGATGCAAAGGGAGGAAAAGATGGAAAGGATACAAAGGATGTAAAAGATGCAAAGGATGCCAAGGAAGGAGGAAAGGACGCAAAGGAAGCAGAGGAAGGAAAGGATGCGAAGAATGGAAAAACTAATTCACCAACCGCAGCTGGAGCTGCAGGTGCAAGCACACCTGTTTCACCTGCCAAAGACGTTGCTGCCAATGGTACTCCCGACTTATCAAAACCAGAGGCTCCTGCTCAACCAGAGGGTGAGCAACATTCGGAAACCAGGCCAGATCCTACCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

120

Amino Acids

12.25

Weight (kDa)

8.75

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	218, 259
Acc36I	ACCTGC	2 cut(s)	218, 259
AciI	CCGC	2 cut(s)	53, 213
AclWI	GGATC	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	4 cut(s)	22, 62, 218, 224
AluI	AGCT	4 cut(s)	22, 62, 218, 224
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	4 cut(s)	62, 215, 224, 266
AsuHPI	GGTGA	3 cut(s)	198, 240, 332
BbvI	GCAGC	4 cut(s)	49, 211, 227, 253
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	340
BciVI	GTATCC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	2 cut(s)	218, 259
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	5 cut(s)	53, 63, 216, 225, 267
BlsI	GCNGC	5 cut(s)	54, 64, 217, 226, 268
Bme1390I	CCNGG	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	5 cut(s)	39, 70, 115, 124, 172
BpmI	CTGGAG	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	4 cut(s)	85, 121, 139, 187
BseXI	GCAGC	4 cut(s)	49, 211, 227, 253
BshFI	GGCC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	2 cut(s)	53, 213
BspANI	GGCC	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	2 cut(s)	218, 259
BspPI	GGATC	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	235
BstF5I	GGATG	4 cut(s)	85, 121, 139, 187
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 164, 221, 224, 230
BstNI	CCWGG	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	4 cut(s)	49, 211, 227, 253
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	85, 121, 139, 187
BveI	ACCTGC	2 cut(s)	218, 259
Cac8I	GCNNGC	1 cut(s)	235
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	6 cut(s)	22, 62, 218, 224, 302, 343
CviKI_1	RGCY	6 cut(s)	22, 62, 218, 224, 302, 343
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	49
FaiI	YATR	1 cut(s)	47
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	5 cut(s)	53, 63, 216, 225, 267
FokI	GGATG	4 cut(s)	92, 128, 146, 194
Fsp4HI	GCNGC	5 cut(s)	53, 63, 216, 225, 267
GluI	GCNGC	5 cut(s)	53, 63, 216, 225, 267
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	343
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	49
HphI	GGTGA	3 cut(s)	198, 240, 332
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	137, 167
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	83, 128, 227, 233
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 164, 221, 224, 230
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	221, 307
Lsp1109I	GCAGC	4 cut(s)	49, 211, 227, 253
LweI	GCATC	5 cut(s)	39, 70, 115, 124, 172
MaeII	ACGT	1 cut(s)	261
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	1 cut(s)	202
MnlI	CCTC	6 cut(s)	45, 83, 140, 163, 292, 310
MspA1I	CMGCKG	2 cut(s)	62, 218
MspR9I	CCNGG	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	5 cut(s)	134, 164, 221, 224, 230
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	303
PaqCI	CACCTGC	2 cut(s)	218, 259
PkrI	GCNGC	5 cut(s)	54, 64, 217, 226, 268
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	2 cut(s)	62, 218
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SatI	GCNGC	5 cut(s)	53, 63, 216, 225, 267
Sau3AI	GATC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	8 cut(s)	24, 64, 220, 226, 232, 244, 253, 264
SfaNI	GCATC	5 cut(s)	39, 70, 115, 124, 172
SfcI	CTRYAG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	53, 213
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	138
TaiI	ACGT	1 cut(s)	264
TasI	AATT	1 cut(s)	202
TauI	GCSGC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	62, 215, 224, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.