Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

32084463 .. 32085325

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1250600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCGAGAGGAAGGCTTTGCTCGCCGTGAGTGGCGTCGAGAGGACGTGCTCGTACGGTTCAAAGAAGGGTATGATCAACTCCTGTACCTGGCCAACCAAGAGAAGTTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATAGCAGAGCTGATTCCTCGCGGGGTTCCTAATATTGAGAAGAAGAGAGGGAAGAAAGATCCTGACAAGAAGCCCTCAATCGTTGTCATCCAGGGCCCAAAACCTGGTAAACCGACTGATCTTTCAAGGATGCGGCAGATTTTCCTGAAGCTGAAACAGAACCCTCCACCACACATGATGCCGTGCCAAAGATGTCAAGGATGCAAAGGGAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

120

Amino Acids

14.09

Weight (kDa)

10.01

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccII	CGCG	1 cut(s)	162
AciI	CCGC	2 cut(s)	162, 274
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	2 cut(s)	54, 86
AfiI	CCNNNNNNNGG	2 cut(s)	88, 245
AgsI	TTSAA	2 cut(s)	61, 267
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	3 cut(s)	87, 231, 244
AluBI	AGCT	3 cut(s)	119, 151, 292
AluI	AGCT	3 cut(s)	119, 151, 292
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	2 cut(s)	90, 235
ApaI	GGGCCC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	235, 236
BaeGI	GKGCMC	1 cut(s)	239
BaeI	ACNNNNGTAYC	2 cut(s)	68, 101
BalI	TGGCCA	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	51
BceAI	ACGGC	2 cut(s)	9, 307
BciT130I	CCWGG	3 cut(s)	89, 233, 246
BclI	TGATCA	1 cut(s)	73
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	3 cut(s)	89, 233, 246
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	235, 236
BmiI	GGNNCC	2 cut(s)	168, 237
BmrFI	CCNGG	3 cut(s)	89, 233, 246
BmsI	GCATC	3 cut(s)	261, 309, 332
BsaHI	GRCGYC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 245
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	3 cut(s)	89, 233, 246
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	228, 276, 347
BseLI	CCNNNNNNNGG	2 cut(s)	88, 245
BseNI	ACTGG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	92, 237
BsiHKAI	GWGCWC	1 cut(s)	51
BsiWI	CGTACG	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	88, 245
BsnI	GGCC	2 cut(s)	92, 237
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	51, 239
Bsp143I	GATC	3 cut(s)	73, 199, 259
BspACI	CCGC	2 cut(s)	162, 274
BspANI	GGCC	2 cut(s)	92, 237
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	168, 237
BspPI	GGATC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	73, 199, 259
BssNI	GRCGYC	1 cut(s)	34
Bst2UI	CCWGG	3 cut(s)	89, 233, 246
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	22
BstF5I	GGATG	3 cut(s)	228, 276, 347
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	3 cut(s)	76, 202, 262
BstMBI	GATC	3 cut(s)	73, 199, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	3 cut(s)	89, 233, 246
BstSCI	CCNGG	3 cut(s)	87, 231, 244
BstSLI	GKGCMC	1 cut(s)	239
BstUI	CGCG	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	92, 237
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	3 cut(s)	228, 276, 347
Cac8I	GCNNGC	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	235, 236
CseI	GACGC	1 cut(s)	23
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	53, 85
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	7 cut(s)	15, 92, 119, 151, 214, 237, 292
CviKI_1	RGCY	7 cut(s)	15, 92, 119, 151, 214, 237, 292
CviQI	GTAC	2 cut(s)	53, 85
DpnI	GATC	3 cut(s)	75, 201, 261
DpnII	GATC	3 cut(s)	73, 199, 259
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	87, 231, 244
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	1 cut(s)	319
FaiI	YATR	2 cut(s)	72, 317
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	3 cut(s)	215, 283, 354
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	92, 237
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	319
HinfI	GANTC	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188III	TCNNGA	3 cut(s)	38, 203, 286
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	2 cut(s)	5, 59
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	73, 199, 259
LweI	GCATC	3 cut(s)	261, 309, 332
MabI	ACCWGGT	1 cut(s)	244
MaeII	ACGT	1 cut(s)	45
MalI	GATC	3 cut(s)	75, 201, 261
MboI	GATC	3 cut(s)	73, 199, 259
MboII	GAAGA	3 cut(s)	193, 196, 205
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	51, 239
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MnlI	CCTC	6 cut(s)	34, 168, 182, 226, 315, 345
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspR9I	CCNGG	3 cut(s)	89, 233, 246
MvaI	CCWGG	3 cut(s)	89, 233, 246
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	3 cut(s)	73, 199, 259
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	2 cut(s)	168, 237
PfeI	GAWTC	1 cut(s)	154
Pfl23II	CGTACG	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	276
Psp6I	CCWGG	3 cut(s)	87, 231, 244
PspGI	CCWGG	3 cut(s)	87, 231, 244
PspLI	CGTACG	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	168, 237
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	235, 236
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	54, 86
RsaNI	GTAC	2 cut(s)	53, 85
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	3 cut(s)	73, 199, 259
Sau96I	GGNCC	2 cut(s)	235, 236
ScrFI	CCNGG	3 cut(s)	89, 233, 246
SduI	GDGCHC	2 cut(s)	51, 239
SetI	ASST	6 cut(s)	48, 90, 121, 153, 247, 294
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	3 cut(s)	261, 309, 332
SsiI	CCGC	2 cut(s)	162, 274
SspI	AATATT	1 cut(s)	175
StyD4I	CCNGG	3 cut(s)	87, 231, 244
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	37
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.