RLG00000018895

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
42412409 .. 42414970
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018895

Sequence Viewer

Length: 1224 bp
ATGTCGTCCTTCGACTCATTTCCTAACGAAGACGACCCCCAGAACCTGTCCCCTACCATTCAACCTTTCAACGATGATGGTTACATGGGCTACGACTCGTCGTTCAACCCTCCCACCCAAGTCGACTTCTCCTCCTCCGACCCACCACCTCCGCCTCAACCGCTCCACTCGGATTTTCATGACGACGTTGTTCTTCCCAACGAGCAGCAGCTGCAGCAGCACTCACCTGACCCCTACGAAGGAGGAGGGTTTGGAATTGAAGCCTCCAACCCCAATCTCAATGACTACACGTTGCCATTTGATTCGGCGGTTTCTGAAGGCAATGCGGATGGTGATAATGAGGGTGACATTTTCACTTCCGATGGGCCGGTGCTTCCGCCTCCAGAGCAAATGCGCGAGGAAGGATTTGCACGCCGTGAGTGGCGCCGGATTATCATGAACTTGATACCTCTTCCAACAAAGAAAAGAGAAATATCATTGGACTACAAGTTAGTTGGTAGGTATCAGCATACTCAGCTTATTTTCTTTATCACTAGGCAATGCAACATAGTTAGCTCTTATATCTTTCTGTACTTGGCCAACCAAGAAAAGTTCCACAAAGAAGCTGACAAGCATTACTGGAAAGCAATAGCCGAGCTCATTCCTCGAGAGGTTCCTAATATTGAGAAGAAGAGAGGGAAAAAAGATCCAGATAAGAAGCCTTCAATCGTTGTCATCCAGGGTCCCAAACCTGGGAAACCTACAGAGCTTTCACGAATGCGCCAAATTTTTCTGAAGCTAAAACAGACCCCTCCTCCACACATGATGCCTCCTCCACCGACACCTGCCAAAGATGGCAAGGATGCAAAGGACGGAAAGGATGGAAAGGATGGAAAGGAAGGGAAAGACACAAAGGACGAAAAGGACGGAAAGGATGGAAAGGAAGGGAAAGACACAAAGGACGAAAAGGATGGAAAGGAAGGGAAAGACACAAAGGAAAGGAAGGATCCAAAGAATGAAAAAACAAATACACCAACTGCAGTTGGAAAAACACCAGTCTCACCTTCCAAAGGTGTTACTGCTAATGGTACAAATGATGCTTCAACAGCAGAGGCTCCTACTAAACCAAAAGTTGAGCAAACTAGTGAACATGAGGGTCAGCTACCTGCTGAACCCAAAGGTGAGCAACCTTTAGAACCCAAGGGTGAGCAACTCACTGATGCAGGGCCAACCCTTAAAGAGTGA

Protein Analysis

408

Amino Acids

45.22

Weight (kDa)

5.23

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 832
Acc36I ACCTGC 2 cut(s) 832, 1153
AccB1I GGYRCC 1 cut(s) 423
AccBSI CCGCTC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 396
AciI CCGC 5 cut(s) 152, 161, 308, 326, 377
AclWI GGATC 3 cut(s) 680, 980, 993
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 1 cut(s) 765
AcuI CTGAAG 2 cut(s) 336, 794
AcyI GRCGYC 1 cut(s) 424
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 2 cut(s) 572, 1069
AfiI CCNNNNNNNGG 4 cut(s) 239, 731, 732, 1049
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 6 cut(s) 62, 70, 106, 260, 705, 1083
AhlI ACTAGT 1 cut(s) 1121
AjnI CCWGG 2 cut(s) 717, 730
AluBI AGCT 8 cut(s) 211, 517, 555, 605, 637, 748, 778, 1141
AluI AGCT 8 cut(s) 211, 517, 555, 605, 637, 748, 778, 1141
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 1 cut(s) 1042
AlwI GGATC 3 cut(s) 680, 980, 993
AlwNI CAGNNNCTG 2 cut(s) 46, 211
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 3 cut(s) 365, 576, 1205
ApeKI GCWGC 5 cut(s) 205, 208, 211, 214, 217
ApoI RAATTY 1 cut(s) 765
AspLEI GCGC 3 cut(s) 396, 426, 762
AspS9I GGNCC 3 cut(s) 365, 722, 1205
AsuHPI GGTGA 6 cut(s) 216, 344, 356, 1032, 1172, 1196
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 1 cut(s) 722
BalI TGGCCA 1 cut(s) 578
BamHI GGATCC 1 cut(s) 985
BanI GGYRCC 1 cut(s) 423
BanII GRGCYC 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 639
BbvI GCAGC 5 cut(s) 198, 217, 220, 226, 229
BccI CCATC 8 cut(s) 71, 323, 356, 827, 854, 863, 908, 944
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 2 cut(s) 719, 732
BcoDI GTCTC 1 cut(s) 1042
BcuI ACTAGT 1 cut(s) 1121
BfaI CTAG 2 cut(s) 534, 1122
BfmI CTRYAG 3 cut(s) 212, 741, 1017
BfoI RGCGCY 1 cut(s) 427
BfuAI ACCTGC 2 cut(s) 832, 1153
BisI GCNGC 5 cut(s) 206, 209, 212, 215, 218
BlsI GCNGC 5 cut(s) 207, 210, 213, 216, 219
Bme1390I CCNGG 2 cut(s) 719, 732
Bme18I GGWCC 1 cut(s) 722
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 3 cut(s) 365, 722, 1205
BmiI GGNNCC 6 cut(s) 425, 654, 723, 724, 987, 1095
BmrFI CCNGG 2 cut(s) 719, 732
BmsI GCATC 4 cut(s) 795, 832, 1066, 1189
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 424
BsaJI CCNNGG 3 cut(s) 718, 731, 1179
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 778, 808
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 731, 732, 1049
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 623, 1034
Bse3DI GCAATG 2 cut(s) 328, 545
BseBI CCWGG 2 cut(s) 719, 732
BseDI CCNNGG 3 cut(s) 718, 731, 1179
BseGI GGATG 7 cut(s) 334, 714, 847, 865, 874, 919, 955
BseLI CCNNNNNNNGG 4 cut(s) 239, 731, 732, 1049
BseMI GCAATG 2 cut(s) 328, 545
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 2 cut(s) 623, 1034
BseRI GAGGAG 5 cut(s) 121, 124, 258, 783, 801
BseXI GCAGC 5 cut(s) 198, 217, 220, 226, 229
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 3 cut(s) 367, 578, 1207
BshNI GGYRCC 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 639
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 2 cut(s) 368, 427
BslFI GGGAC 2 cut(s) 34, 708
BslI CCNNNNNNNGG 4 cut(s) 239, 731, 732, 1049
BsmAI GTCTC 1 cut(s) 1042
BsmFI GGGAC 2 cut(s) 34, 708
BsmI GAATGC 1 cut(s) 762
BsnI GGCC 3 cut(s) 367, 578, 1207
BsoBI CYCGRG 1 cut(s) 645
Bsp1286I GDGCHC 1 cut(s) 639
Bsp143I GATC 2 cut(s) 685, 985
BspACI CCGC 5 cut(s) 152, 161, 308, 326, 377
BspANI GGCC 3 cut(s) 367, 578, 1207
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 1 cut(s) 396
BspHI TCATGA 2 cut(s) 178, 435
BspLI GGNNCC 6 cut(s) 425, 654, 723, 724, 987, 1095
BspMAI CTGCAG 2 cut(s) 216, 1021
BspMI ACCTGC 2 cut(s) 832, 1153
BspPI GGATC 3 cut(s) 680, 980, 993
BspT107I GGYRCC 1 cut(s) 423
BsrBI CCGCTC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 328, 545
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 2 cut(s) 623, 1034
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 718, 731, 1179
BssMI GATC 2 cut(s) 685, 985
BssNI GRCGYC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 1179
Bst2UI CCWGG 2 cut(s) 719, 732
Bst6I CTCTTC 2 cut(s) 456, 665
BstACI GRCGYC 1 cut(s) 424
BstAPI GCANNNNNTGC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 513
BstENI CCTNNNNNAGG 1 cut(s) 1047
BstF5I GGATG 7 cut(s) 334, 714, 847, 865, 874, 919, 955
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 3 cut(s) 396, 426, 762
BstKTI GATC 2 cut(s) 688, 988
BstMAI GTCTC 1 cut(s) 1042
BstMBI GATC 2 cut(s) 685, 985
BstMWI GCNNNNNNNGC 7 cut(s) 160, 211, 214, 217, 385, 514, 1085
BstNI CCWGG 2 cut(s) 719, 732
BstSCI CCNGG 2 cut(s) 717, 730
BstSFI CTRYAG 3 cut(s) 212, 741, 1017
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 5 cut(s) 198, 217, 220, 226, 229
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 2 cut(s) 685, 985
BstYI RGATCY 2 cut(s) 685, 985
BsuRI GGCC 3 cut(s) 367, 578, 1207
BtsCI GGATG 7 cut(s) 334, 714, 847, 865, 874, 919, 955
BtsIMutI CAGTG 1 cut(s) 1194
BveI ACCTGC 2 cut(s) 832, 1153
Cac8I GCNNGC 1 cut(s) 412
CaiI CAGNNNCTG 2 cut(s) 46, 211
CciI TCATGA 2 cut(s) 178, 435
CfoI GCGC 3 cut(s) 396, 426, 762
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 365, 722, 1205
Csp6I GTAC 2 cut(s) 571, 1068
CviAII CATG 5 cut(s) 85, 179, 436, 802, 1130
CviQI GTAC 2 cut(s) 571, 1068
DdeI CTNAG 1 cut(s) 513
DinI GGCGCC 1 cut(s) 425
DpnI GATC 2 cut(s) 687, 987
DpnII GATC 2 cut(s) 685, 985
DraIII CACNNNGTG 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 2 cut(s) 456, 665
EarI CTCTTC 2 cut(s) 456, 665
EciI GGCGGA 2 cut(s) 141, 366
Ecl136II GAGCTC 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 1179
Eco24I GRGCYC 1 cut(s) 639
Eco47I GGWCC 1 cut(s) 722
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 2 cut(s) 336, 794
Eco88I CYCGRG 1 cut(s) 645
EcoICRI GAGCTC 1 cut(s) 637
EcoNI CCTNNNNNAGG 1 cut(s) 1047
EcoO109I RGGNCCY 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 717, 730
EcoT14I CCWWGG 1 cut(s) 1179
EcoT38I GRGCYC 1 cut(s) 639
EgeI GGCGCC 1 cut(s) 425
EheI GGCGCC 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 1179
FaeI CATG 5 cut(s) 88, 182, 439, 805, 1133
FaiI YATR 8 cut(s) 86, 180, 437, 510, 548, 561, 803, 1131
FaqI GGGAC 2 cut(s) 34, 708
FatI CATG 5 cut(s) 84, 178, 435, 801, 1129
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 5 cut(s) 206, 209, 212, 215, 218
FokI GGATG 7 cut(s) 341, 701, 854, 872, 881, 926, 962
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 5 cut(s) 206, 209, 212, 215, 218
FspBI CTAG 2 cut(s) 534, 1122
GlaI GCGC 3 cut(s) 395, 425, 761
GluI GCNGC 5 cut(s) 206, 209, 212, 215, 218
GsuI CTGGAG 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 3 cut(s) 367, 578, 1207
HapII CCGG 2 cut(s) 368, 427
HhaI GCGC 3 cut(s) 396, 426, 762
Hin1I GRCGYC 1 cut(s) 424
Hin1II CATG 5 cut(s) 88, 182, 439, 805, 1133
Hin6I GCGC 3 cut(s) 394, 424, 760
HinP1I GCGC 3 cut(s) 394, 424, 760
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 14, 95, 302
HpaII CCGG 2 cut(s) 368, 427
HphI GGTGA 6 cut(s) 216, 344, 356, 1032, 1172, 1196
Hpy166II GTNNAC 2 cut(s) 124, 1127
Hpy188I TCNGA 5 cut(s) 139, 172, 316, 361, 774
Hpy188III TCNNGA 6 cut(s) 179, 383, 436, 647, 689, 753
Hpy8I GTNNAC 2 cut(s) 124, 1127
Hpy99I CGWCG 2 cut(s) 103, 188
HpyCH4IV ACGT 2 cut(s) 186, 290
HpyCH4V TGCA 6 cut(s) 214, 410, 543, 845, 1019, 1202
HpyF10VI GCNNNNNNNGC 7 cut(s) 160, 211, 214, 217, 385, 514, 1085
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 2 cut(s) 186, 290
Hsp92I GRCGYC 1 cut(s) 424
Hsp92II CATG 5 cut(s) 88, 182, 439, 805, 1133
HspAI GCGC 3 cut(s) 394, 424, 760
KasI GGCGCC 1 cut(s) 423
KflI GGGWCCC 1 cut(s) 722
Kzo9I GATC 2 cut(s) 685, 985
LmnI GCTCC 2 cut(s) 168, 1099
Lsp1109I GCAGC 5 cut(s) 198, 217, 220, 226, 229
LweI GCATC 4 cut(s) 795, 832, 1066, 1189
MaeI CTAG 2 cut(s) 534, 1122
MaeII ACGT 2 cut(s) 186, 290
MaeIII GTNAC 3 cut(s) 80, 344, 1054
MalI GATC 2 cut(s) 687, 987
MbiI CCGCTC 1 cut(s) 163
MboI GATC 2 cut(s) 685, 985
MboII GAAGA 5 cut(s) 41, 185, 443, 679, 682
MflI RGATCY 2 cut(s) 685, 985
MhlI GDGCHC 1 cut(s) 639
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 2 cut(s) 255, 765
MluNI TGGCCA 1 cut(s) 578
Mly113I GGCGCC 1 cut(s) 424
MlyI GAGTC 2 cut(s) 8, 89
MmeI TCCRAC 4 cut(s) 162, 291, 479, 1003
Mox20I TGGCCA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 578
MseI TTAA 1 cut(s) 1215
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 2 cut(s) 368, 427
MspR9I CCNGG 2 cut(s) 719, 732
Mva1269I GAATGC 1 cut(s) 762
MvaI CCWGG 2 cut(s) 719, 732
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 7 cut(s) 160, 211, 214, 217, 385, 514, 1085
NarI GGCGCC 1 cut(s) 424
NdeII GATC 2 cut(s) 685, 985
NlaIII CATG 5 cut(s) 88, 182, 439, 805, 1133
NlaIV GGNNCC 6 cut(s) 425, 654, 723, 724, 987, 1095
NmeAIII GCCGAG 1 cut(s) 658
NmuCI GTSAC 1 cut(s) 344
PaeR7I CTCGAG 1 cut(s) 645
PagI TCATGA 2 cut(s) 178, 435
PaqCI CACCTGC 1 cut(s) 832
PctI GAATGC 1 cut(s) 762
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 5 cut(s) 207, 210, 213, 216, 219
PleI GAGTC 2 cut(s) 8, 89
PluTI GGCGCC 1 cut(s) 427
PpsI GAGTC 2 cut(s) 8, 89
PpuMI RGGWCCY 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 2 cut(s) 717, 730
PspGI CCWGG 2 cut(s) 717, 730
PspN4I GGNNCC 6 cut(s) 425, 654, 723, 724, 987, 1095
PspPI GGNCC 3 cut(s) 365, 722, 1205
PspPPI RGGWCCY 1 cut(s) 722
PstI CTGCAG 2 cut(s) 216, 1021
PstNI CAGNNNCTG 2 cut(s) 46, 211
PsuI RGATCY 2 cut(s) 685, 985
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 2 cut(s) 572, 1069
RsaNI GTAC 2 cut(s) 571, 1068
SacI GAGCTC 1 cut(s) 639
SalI GTCGAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 1215
SatI GCNGC 5 cut(s) 206, 209, 212, 215, 218
Sau3AI GATC 2 cut(s) 685, 985
Sau96I GGNCC 3 cut(s) 365, 722, 1205
SchI GAGTC 2 cut(s) 8, 89
ScrFI CCNGG 2 cut(s) 719, 732
SduI GDGCHC 1 cut(s) 639
SfaNI GCATC 4 cut(s) 795, 832, 1066, 1189
SfcI CTRYAG 3 cut(s) 212, 741, 1017
SfoI GGCGCC 1 cut(s) 425
Sfr274I CTCGAG 1 cut(s) 645
SinI GGWCC 1 cut(s) 722
SlaI CTCGAG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
SpeI ACTAGT 1 cut(s) 1121
Sse9I AATT 2 cut(s) 255, 765
SsiI CCGC 5 cut(s) 152, 161, 308, 326, 377
SspDI GGCGCC 1 cut(s) 423
SspI AATATT 1 cut(s) 661
SspMI CTAG 2 cut(s) 534, 1122
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 717, 730
StyI CCWWGG 1 cut(s) 1179
TaiI ACGT 2 cut(s) 189, 293
TaqI TCGA 3 cut(s) 12, 123, 646
TasI AATT 2 cut(s) 255, 765
TatI WGTACW 1 cut(s) 570
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 1215
Tru9I TTAA 1 cut(s) 1215
TscAI CASTG 1 cut(s) 1201
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 5 cut(s) 205, 208, 211, 214, 217
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 167, 452, 1011
TspGWI ACGGA 2 cut(s) 867, 921
TspRI CASTG 1 cut(s) 1201
VpaK11BI GGWCC 1 cut(s) 722
XagI CCTNNNNNAGG 1 cut(s) 1047
XapI RAATTY 1 cut(s) 765
XhoI CTCGAG 1 cut(s) 645
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 534, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.