Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

22843815 .. 22846076

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGTCGTCCTTCGACTCCTTCCCCAACGACAACGAATCCCACGACCCCCACAGCCACTCCCCCGCCGGCCAGCCCTTCGACGACGATGCTTACATGGCACACGACCCCGGCCTTCCTTCCCATAACTACGACTCGTCGTTCAACCCTCCCACCCACCACGACGACTTCTCCCCCGCTGCCATCGACCCTCCCCCTCTCCTCCACTCTGATTTCCAGGACGACGTCGTTCTCCCCGGTGGCGACGACCACCACAACATTGATCAGCAGCAGCAGTCCCCCGAGGTGTACGGCTTCGGCATTTCCACCCCTAACCCGGAATTCGTGTCACCTTTTGATTCGGCGGTGCCCGAGGAAAATGGCGTCGTGGGTGGAGATGGCGGCATTGGTGATGATGACGGGGGCATTTTCGCCTCCAGTGAGCCGGTACTGCCTCCGCCCGAGGAGATGCGGGAGGAAGGCTTTGCTCGCCGTGAGTGGCGTCGCCTAAATGTCATTCATCTAGAGGAAAAGGAAAAAAGGGAAAGGGAGATGCGGAACCAGATTATCGAGGAAGCTGAAGAATTTAAGCGGGCCTTCTATGAGAAACGGAAGCTCAATTGTGAAACTAACAAAGCTCACAACAGAGAAAGGGAGAAGCTGTACCTGGCCAACCAAGAGAAGTTCCACAAAGAAGCTGACAAACATTACTGGAAAGCAATAGCGGAGCTGATTCCTCGTGAGGTTCCTAATATTGAGAAGAAGAGAGGGAAGAAGGATCCAGACAAGAAGCCCTCAATTGTTGTCATCCAGGGCCCAAAACCTGGTAAACCGACTGATCTTTCAAGGATGCGGCAGATTTTCCTGCAGCTGAAACAGAACCCACCGCCACACATGATGCCACTCCCACCTTCCAAAGATGGTAAGGATGCAAGGGGAGAAAAAGATGGAAAGGAGTCAAAGGATGGCAATGATACAAAAGATGCAAAGGGAGGAAAGGGAGCAAAGGATACCAAGGAAGGAGGAATGGACGCAAAGGATGCCAAGGAAGGAGGAAATGACGCGAAGGATACCAAGGAAGGAGGAAAGGATGCAAAGGAAGCAAAGGAAGCAAAGGATGCCAAGAATGGAAAAATTAATTCACCAACCGCAGCTGGAGCTGCAGCTGCAAGCGCACCTGTTTCACCTGCCAAAGATGTTACTGCCAATGGTACTCCCGGCTCATCAAAACCAGGGGCTTCAGCTGAACCAGAGGGTGAGCAACATTTGGAAACCACGCCAACTCCTGCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

424

Amino Acids

46.29

Weight (kDa)

5.24

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1171
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	1171
AccB1I	GGYRCC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccII	CGCG	1 cut(s)	1040
AclWI	GGATC	2 cut(s)	749, 762
AcoI	YGGCCR	2 cut(s)	67, 645
AcsI	RAATTY	2 cut(s)	317, 560
AcuI	CTGAAG	2 cut(s)	576, 1200
AcyI	GRCGYC	3 cut(s)	222, 360, 478
AfaI	GTAC	4 cut(s)	287, 426, 641, 1189
AfiI	CCNNNNNNNGG	2 cut(s)	313, 800
AgsI	TTSAA	2 cut(s)	142, 822
AjnI	CCWGG	5 cut(s)	213, 642, 786, 799, 1207
AlwI	GGATC	2 cut(s)	749, 762
Ama87I	CYCGRG	3 cut(s)	278, 347, 437
AoxI	GGCC	5 cut(s)	67, 109, 570, 645, 790
ApaI	GGGCCC	1 cut(s)	794
ApeKI	GCWGC	8 cut(s)	176, 265, 268, 844, 1127, 1136, 1139, 1142
ApoI	RAATTY	2 cut(s)	317, 560
AseI	ATTAAT	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	1151
AspS9I	GGNCC	3 cut(s)	570, 790, 791
AsuC2I	CCSGG	4 cut(s)	108, 234, 314, 1194
AsuHPI	GGTGA	5 cut(s)	318, 398, 1110, 1152, 1244
AvaI	CYCGRG	3 cut(s)	278, 347, 437
BaeGI	GKGCMC	2 cut(s)	348, 794
BalI	TGGCCA	1 cut(s)	647
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	794
BauI	CACGAG	1 cut(s)	714
BbvI	GCAGC	8 cut(s)	163, 277, 280, 856, 1123, 1129, 1139, 1151
BccI	CCATC	5 cut(s)	188, 368, 890, 917, 935
BceAI	ACGGC	2 cut(s)	304, 453
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	5 cut(s)	215, 644, 788, 801, 1209
BciVI	GTATCC	2 cut(s)	979, 1039
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	4 cut(s)	108, 234, 314, 1194
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	842, 1137
BfuAI	ACCTGC	1 cut(s)	1171
BfuI	GTATCC	2 cut(s)	979, 1039
Bme1390I	CCNGG	9 cut(s)	108, 215, 234, 314, 644, 788, 801, 1194, 1209
BmeT110I	CYCGRG	3 cut(s)	278, 347, 437
BmgT120I	GGNCC	3 cut(s)	570, 790, 791
BmiI	GGNNCC	5 cut(s)	345, 536, 723, 756, 792
BmrFI	CCNGG	9 cut(s)	108, 215, 234, 314, 644, 788, 801, 1194, 1209
BpmI	CTGGAG	2 cut(s)	397, 1152
BpuMI	CCSGG	4 cut(s)	108, 234, 314, 1194
BsaHI	GRCGYC	3 cut(s)	222, 360, 478
BsaXI	ACNNNNNCTCC	7 cut(s)	41, 71, 152, 182, 623, 653, 1243
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 800
Bse118I	RCCGGY	2 cut(s)	65, 421
Bse1I	ACTGG	2 cut(s)	414, 692
Bse3DI	GCAATG	1 cut(s)	952
BseBI	CCWGG	5 cut(s)	215, 644, 788, 801, 1209
BseGI	GGATG	7 cut(s)	783, 831, 910, 946, 1021, 1072, 1099
BseLI	CCNNNNNNNGG	2 cut(s)	313, 800
BseMI	GCAATG	1 cut(s)	952
BseNI	ACTGG	2 cut(s)	414, 692
BseRI	GAGGAG	2 cut(s)	188, 455
BseSI	GKGCMC	2 cut(s)	348, 794
BseXI	GCAGC	8 cut(s)	163, 277, 280, 856, 1123, 1129, 1139, 1151
Bsh1236I	CGCG	1 cut(s)	1040
BshFI	GGCC	5 cut(s)	69, 111, 572, 647, 792
BshNI	GGYRCC	1 cut(s)	343
BsiHKCI	CYCGRG	3 cut(s)	278, 347, 437
BsiSI	CCGG	6 cut(s)	66, 108, 234, 314, 422, 1194
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	313, 800
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	5 cut(s)	69, 111, 572, 647, 792
BsoBI	CYCGRG	3 cut(s)	278, 347, 437
Bsp120I	GGGCCC	1 cut(s)	790
Bsp1286I	GDGCHC	2 cut(s)	348, 794
Bsp143I	GATC	3 cut(s)	259, 754, 814
BspANI	GGCC	5 cut(s)	69, 111, 572, 647, 792
BspFNI	CGCG	1 cut(s)	1040
BspLI	GGNNCC	5 cut(s)	345, 536, 723, 756, 792
BspMAI	CTGCAG	2 cut(s)	846, 1141
BspMI	ACCTGC	1 cut(s)	1171
BspPI	GGATC	2 cut(s)	749, 762
BspT107I	GGYRCC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	952
BsrFI	RCCGGY	2 cut(s)	65, 421
BsrI	ACTGG	2 cut(s)	414, 692
BssAI	RCCGGY	2 cut(s)	65, 421
BssMI	GATC	3 cut(s)	259, 754, 814
BssNI	GRCGYC	3 cut(s)	222, 360, 478
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	3 cut(s)	990, 1020, 1050
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	5 cut(s)	215, 644, 788, 801, 1209
Bst6I	CTCTTC	1 cut(s)	734
BstACI	GRCGYC	3 cut(s)	222, 360, 478
BstAPI	GCANNNNNTGC	2 cut(s)	1016, 1094
BstC8I	GCNNGC	5 cut(s)	67, 71, 466, 570, 1147
BstF5I	GGATG	7 cut(s)	783, 831, 910, 946, 1021, 1072, 1099
BstFNI	CGCG	1 cut(s)	1040
BstHHI	GCGC	1 cut(s)	1151
BstKTI	GATC	3 cut(s)	262, 757, 817
BstMBI	GATC	3 cut(s)	259, 754, 814
BstNI	CCWGG	5 cut(s)	215, 644, 788, 801, 1209
BstSCI	CCNGG	9 cut(s)	106, 213, 232, 312, 642, 786, 799, 1192, 1207
BstSFI	CTRYAG	2 cut(s)	842, 1137
BstSLI	GKGCMC	2 cut(s)	348, 794
BstUI	CGCG	1 cut(s)	1040
BstV1I	GCAGC	8 cut(s)	163, 277, 280, 856, 1123, 1129, 1139, 1151
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuI	GTATCC	2 cut(s)	979, 1039
BsuRI	GGCC	5 cut(s)	69, 111, 572, 647, 792
BtsCI	GGATG	7 cut(s)	783, 831, 910, 946, 1021, 1072, 1099
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	1171
Cac8I	GCNNGC	5 cut(s)	67, 71, 466, 570, 1147
CfoI	GCGC	1 cut(s)	1151
Cfr10I	RCCGGY	2 cut(s)	65, 421
Cfr13I	GGNCC	3 cut(s)	570, 790, 791
CseI	GACGC	4 cut(s)	349, 467, 1016, 1046
CsiI	ACCWGGT	1 cut(s)	799
Csp6I	GTAC	4 cut(s)	286, 425, 640, 1188
CviAII	CATG	2 cut(s)	94, 871
CviQI	GTAC	4 cut(s)	286, 425, 640, 1188
DpnI	GATC	3 cut(s)	261, 756, 816
DpnII	GATC	3 cut(s)	259, 754, 814
EaeI	YGGCCR	2 cut(s)	67, 645
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
EciI	GGCGGA	1 cut(s)	423
Eco130I	CCWWGG	3 cut(s)	990, 1020, 1050
Eco24I	GRGCYC	1 cut(s)	794
Eco57I	CTGAAG	2 cut(s)	576, 1200
Eco88I	CYCGRG	3 cut(s)	278, 347, 437
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	5 cut(s)	213, 642, 786, 799, 1207
EcoT14I	CCWWGG	3 cut(s)	990, 1020, 1050
EcoT38I	GRGCYC	1 cut(s)	794
ErhI	CCWWGG	3 cut(s)	990, 1020, 1050
FaeI	CATG	2 cut(s)	97, 874
FaiI	YATR	4 cut(s)	95, 123, 579, 872
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	2 cut(s)	93, 870
FauI	CCCGC	4 cut(s)	70, 181, 441, 561
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	7 cut(s)	770, 838, 917, 953, 1028, 1079, 1106
FriOI	GRGCYC	1 cut(s)	794
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	1150
GsuI	CTGGAG	2 cut(s)	397, 1152
HaeIII	GGCC	5 cut(s)	69, 111, 572, 647, 792
HapII	CCGG	6 cut(s)	66, 108, 234, 314, 422, 1194
HgaI	GACGC	4 cut(s)	349, 467, 1016, 1046
HhaI	GCGC	1 cut(s)	1151
Hin1I	GRCGYC	3 cut(s)	222, 360, 478
Hin1II	CATG	2 cut(s)	97, 874
Hin6I	GCGC	1 cut(s)	1149
HinP1I	GCGC	1 cut(s)	1149
HinfI	GANTC	6 cut(s)	14, 35, 131, 335, 709, 932
HpaII	CCGG	6 cut(s)	66, 108, 234, 314, 422, 1194
HphI	GGTGA	5 cut(s)	318, 398, 1110, 1152, 1244
Hpy166II	GTNNAC	2 cut(s)	286, 806
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	3 cut(s)	500, 716, 758
Hpy8I	GTNNAC	2 cut(s)	286, 806
Hpy99I	CGWCG	9 cut(s)	83, 86, 139, 164, 224, 227, 245, 365, 483
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	6 cut(s)	844, 908, 962, 1070, 1139, 1145
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	3 cut(s)	222, 360, 478
Hsp92II	CATG	2 cut(s)	97, 874
HspAI	GCGC	1 cut(s)	1149
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	259, 754, 814
LmnI	GCTCC	3 cut(s)	703, 977, 1133
Lsp1109I	GCAGC	8 cut(s)	163, 277, 280, 856, 1123, 1129, 1139, 1151
MabI	ACCWGGT	1 cut(s)	799
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	324, 1174
MalI	GATC	3 cut(s)	261, 756, 816
MboI	GATC	3 cut(s)	259, 754, 814
MboII	GAAGA	4 cut(s)	569, 748, 751, 760
MfeI	CAATTG	2 cut(s)	595, 774
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	2 cut(s)	348, 794
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	6 cut(s)	317, 560, 595, 774, 1110, 1114
MluNI	TGGCCA	1 cut(s)	647
MlyI	GAGTC	3 cut(s)	8, 125, 941
Mox20I	TGGCCA	1 cut(s)	647
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	2 cut(s)	564, 1113
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	5 cut(s)	176, 847, 1130, 1142, 1220
MspI	CCGG	6 cut(s)	66, 108, 234, 314, 422, 1194
MspR9I	CCNGG	9 cut(s)	108, 215, 234, 314, 644, 788, 801, 1194, 1209
MunI	CAATTG	2 cut(s)	595, 774
MvaI	CCWGG	5 cut(s)	215, 644, 788, 801, 1209
MvnI	CGCG	1 cut(s)	1040
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	4 cut(s)	108, 234, 314, 1194
NdeII	GATC	3 cut(s)	259, 754, 814
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	97, 874
NlaIV	GGNNCC	5 cut(s)	345, 536, 723, 756, 792
NmuCI	GTSAC	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	1171
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	35, 335, 709
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	800
PfoI	TCCNGGA	1 cut(s)	213
PleI	GAGTC	3 cut(s)	8, 125, 940
PpsI	GAGTC	3 cut(s)	8, 125, 940
PshBI	ATTAAT	1 cut(s)	1113
Psp6I	CCWGG	5 cut(s)	213, 642, 786, 799, 1207
PspGI	CCWGG	5 cut(s)	213, 642, 786, 799, 1207
PspN4I	GGNNCC	5 cut(s)	345, 536, 723, 756, 792
PspOMI	GGGCCC	1 cut(s)	790
PspPI	GGNCC	3 cut(s)	570, 790, 791
PstI	CTGCAG	2 cut(s)	846, 1141
PsuI	RGATCY	1 cut(s)	754
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	4 cut(s)	847, 1130, 1142, 1220
RsaI	GTAC	4 cut(s)	287, 426, 641, 1189
RsaNI	GTAC	4 cut(s)	286, 425, 640, 1188
SaqAI	TTAA	2 cut(s)	564, 1113
Sau3AI	GATC	3 cut(s)	259, 754, 814
Sau96I	GGNCC	3 cut(s)	570, 790, 791
SchI	GAGTC	3 cut(s)	8, 125, 941
ScrFI	CCNGG	9 cut(s)	108, 215, 234, 314, 644, 788, 801, 1194, 1209
SduI	GDGCHC	2 cut(s)	348, 794
SexAI	ACCWGGT	1 cut(s)	799
SfcI	CTRYAG	2 cut(s)	842, 1137
Sse9I	AATT	6 cut(s)	317, 560, 595, 774, 1110, 1114
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	9 cut(s)	106, 213, 232, 312, 642, 786, 799, 1192, 1207
StyI	CCWWGG	3 cut(s)	990, 1020, 1050
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	12, 78, 183, 546
TasI	AATT	6 cut(s)	317, 560, 595, 774, 1110, 1114
TauI	GCSGC	2 cut(s)	381, 832
TfiI	GAWTC	3 cut(s)	35, 335, 709
Tru1I	TTAA	2 cut(s)	564, 1113
Tru9I	TTAA	2 cut(s)	564, 1113
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	8 cut(s)	176, 265, 268, 844, 1127, 1136, 1139, 1142
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	485
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	800
VspI	ATTAAT	1 cut(s)	1113
XapI	RAATTY	2 cut(s)	317, 560
XbaI	TCTAGA	1 cut(s)	499
XspI	CTAG	1 cut(s)	500
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.