Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444151.1

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

573 .. 1178

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444151.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ctgtacttggccaaccaagaaaagttccacaaagaagctgacaagcattactggaaagcaatagcagagctcattcctcgagaggttcctaatattgagaagaagagaggtaaaaaggatcctgataaaaagccttcaatcgttgtcatccagggtcccaaacctgggaaacctacagatctttcacgaatgcgccaaatttttctgaagctaaaacaaacccctcctccacacatgatgcctcctccaccgacacctgccaaagatggcaatgatgcaaaggatggaaaggatggaaaggaagggaaagacacaaaggacgaaaaggatggaaaggaagggaaagacacaaaggaaaggaaggatccaaagaatgaaaaaataaatacaccaactgcagttggaaaaacaccagtctcaccttccaaaggtgttactgctaatgatacgaaggatgcttcaacaccagaggctcctgctgaaccaaaagttgagcaaactggtgaacatgaaggtcgactacctgctgaacccaaaggtgagcaacctttagaacccaagggtgagcagcaactcgctgatgcagggccaacccttaaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

201

Amino Acids

22.09

Weight (kDa)

8.96

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	2 cut(s)	265, 532
AccI	GTMKAC	1 cut(s)	517
AclWI	GGATC	4 cut(s)	113, 126, 359, 372
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	164, 165, 428
AgsI	TTSAA	2 cut(s)	138, 462
AjnI	CCWGG	2 cut(s)	150, 163
AluBI	AGCT	3 cut(s)	38, 70, 211
AluI	AGCT	3 cut(s)	38, 70, 211
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	4 cut(s)	113, 126, 359, 372
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	9, 587
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	155, 587
AsuHPI	GGTGA	4 cut(s)	411, 515, 551, 575
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	11
BamHI	GGATCC	2 cut(s)	118, 364
BanII	GRGCYC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	4 cut(s)	260, 278, 287, 323
BciT130I	CCWGG	2 cut(s)	152, 165
BcoDI	GTCTC	1 cut(s)	421
BfmI	CTRYAG	2 cut(s)	174, 396
BfuAI	ACCTGC	2 cut(s)	265, 532
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	2 cut(s)	152, 165
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	155, 587
BmiI	GGNNCC	6 cut(s)	87, 120, 156, 157, 366, 474
BmrFI	CCNGG	2 cut(s)	152, 165
BmsI	GCATC	4 cut(s)	228, 265, 445, 571
BsaJI	CCNNGG	3 cut(s)	151, 164, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 165, 428
Bse1I	ACTGG	3 cut(s)	56, 413, 505
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	152, 165
BseDI	CCNNGG	3 cut(s)	151, 164, 558
BseGI	GGATG	5 cut(s)	147, 289, 298, 334, 460
BseLI	CCNNNNNNNGG	3 cut(s)	164, 165, 428
BseMI	GCAATG	1 cut(s)	277
BseNI	ACTGG	3 cut(s)	56, 413, 505
BseRI	GAGGAG	2 cut(s)	216, 234
BseXI	GCAGC	1 cut(s)	580
BshFI	GGCC	2 cut(s)	11, 589
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	164, 165, 428
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	11, 589
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	118, 178, 364
BspANI	GGCC	2 cut(s)	11, 589
BspLI	GGNNCC	6 cut(s)	87, 120, 156, 157, 366, 474
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	2 cut(s)	265, 532
BspPI	GGATC	4 cut(s)	113, 126, 359, 372
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	56, 413, 505
BssECI	CCNNGG	3 cut(s)	151, 164, 558
BssMI	GATC	3 cut(s)	118, 178, 364
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	2 cut(s)	152, 165
Bst6I	CTCTTC	1 cut(s)	98
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	5 cut(s)	147, 289, 298, 334, 460
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	121, 181, 367
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	118, 178, 364
BstNI	CCWGG	2 cut(s)	152, 165
BstSCI	CCNGG	2 cut(s)	150, 163
BstSFI	CTRYAG	2 cut(s)	174, 396
BstV1I	GCAGC	1 cut(s)	580
BstX2I	RGATCY	3 cut(s)	118, 178, 364
BstYI	RGATCY	3 cut(s)	118, 178, 364
BsuRI	GGCC	2 cut(s)	11, 589
BtsCI	GGATG	5 cut(s)	147, 289, 298, 334, 460
BveI	ACCTGC	2 cut(s)	265, 532
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	155, 587
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	235, 509
CviJI	RGCY	7 cut(s)	11, 38, 70, 133, 211, 473, 589
CviKI_1	RGCY	7 cut(s)	11, 38, 70, 133, 211, 473, 589
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	3 cut(s)	120, 180, 366
DpnII	GATC	3 cut(s)	118, 178, 364
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	150, 163
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	2 cut(s)	238, 512
FaiI	YATR	2 cut(s)	236, 510
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	2 cut(s)	234, 508
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	5 cut(s)	134, 296, 305, 341, 467
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	569
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	11, 589
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	238, 512
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	518
HindII	GTYRAC	1 cut(s)	518
HphI	GGTGA	4 cut(s)	411, 515, 551, 575
Hpy166II	GTNNAC	2 cut(s)	506, 518
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	80, 122, 186
Hpy8I	GTNNAC	2 cut(s)	506, 518
HpyAV	CCTTC	7 cut(s)	144, 296, 332, 355, 432, 445, 506
HpyCH4V	TGCA	3 cut(s)	278, 398, 584
Hsp92II	CATG	2 cut(s)	238, 512
HspAI	GCGC	1 cut(s)	193
KflI	GGGWCCC	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	118, 178, 364
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	4 cut(s)	228, 265, 445, 571
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	3 cut(s)	120, 180, 366
MboI	GATC	3 cut(s)	118, 178, 364
MboII	GAAGA	2 cut(s)	112, 115
MflI	RGATCY	3 cut(s)	118, 178, 364
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	1 cut(s)	198
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	8 cut(s)	76, 87, 101, 234, 237, 252, 255, 463
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	597
Msp20I	TGGCCA	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	152, 165
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	2 cut(s)	152, 165
NdeII	GATC	3 cut(s)	118, 178, 364
NlaIII	CATG	2 cut(s)	238, 512
NlaIV	GGNNCC	6 cut(s)	87, 120, 156, 157, 366, 474
PaeR7I	CTCGAG	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	570
PpuMI	RGGWCCY	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	150, 163
PspGI	CCWGG	2 cut(s)	150, 163
PspN4I	GGNNCC	6 cut(s)	87, 120, 156, 157, 366, 474
PspPI	GGNCC	2 cut(s)	155, 587
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	118, 178, 364
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	3 cut(s)	118, 178, 364
Sau96I	GGNCC	2 cut(s)	155, 587
ScrFI	CCNGG	2 cut(s)	152, 165
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	4 cut(s)	228, 265, 445, 571
SfcI	CTRYAG	2 cut(s)	174, 396
Sfr274I	CTCGAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	198
SspI	AATATT	1 cut(s)	94
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	150, 163
StyI	CCWWGG	1 cut(s)	558
TaqI	TCGA	2 cut(s)	79, 517
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TseI	GCWGC	1 cut(s)	568
TspDTI	ATGAA	2 cut(s)	390, 525
VpaK11BI	GGWCC	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.