Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000264.1

Orthogroup ID

OG0009774

Physical Location & Seq

Genomic Coordinates Reverse (-)

122385 .. 122765

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000264.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgcgccaaatttttctgaagctaaaacaaacccctcctccacacatgatgcctcctccaccgacacctgccaaagatggcaatgatgcaaaggatggaaaggatggaaaggaagggaaagacacaaaggaaaggaaggatccaaagaatgaaaaaataaatacaccaactgcagttggaaaaacaccagtctcaccttccaaaggtgttactgctaatgatacgaaggatgcttcaacaccagaggctcctgctgaaccaaaagttgagcaaactggtgaacatgaaggtcgactacctgctgaacccaaaggtgagcaacctttagaacccaagggtgagcagcaactcgctgatgcagggccaacccttaaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

126

Amino Acids

13.5

Weight (kDa)

6.17

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20760
fragaria_vesca	FvH4_5g32880
malus_domestica	MD09G1250600.v1.1 MD09G1251000.v1.1 MD17G1243300.v1.1
prunus_persica	Prupe.3G155800_v2.0.a1
pyrus_communis	pycom09g16700 pycom17g24590
rosa_chinensis	RchiOBHm_Chr2g0126241
rosa_laevigata	RLG00000018895
rosa_multiflora	Rmu_co8444151.1_g000001 Rmu_ssc0000264.1_g000023 Rmu_ssc0000264.1_g000024
rosa_roxburghii	Rroxscaffold_2G00117300 Rroxscaffold_2G00117330
rosa_rugosa	Rorug02G0262200
rosa_samantha	Rh2AG319200 Rh2BG327500 Rh2DG345800 Rh2DG347200
rosa_wichuraiana	Rw2G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	2 cut(s)	76, 307
AccI	GTMKAC	1 cut(s)	292
AclWI	GGATC	2 cut(s)	134, 147
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	237
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	134, 147
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	4 cut(s)	186, 290, 326, 350
BamHI	GGATCC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	279, 311
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	3 cut(s)	71, 89, 98
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	2 cut(s)	76, 307
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	141, 249
BmsI	GCATC	4 cut(s)	39, 76, 220, 346
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	188, 280
Bse3DI	GCAATG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	3 cut(s)	100, 109, 235
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	88
BseNI	ACTGG	2 cut(s)	188, 280
BseRI	GAGGAG	2 cut(s)	27, 45
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	364
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	141, 249
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	2 cut(s)	76, 307
BspPI	GGATC	2 cut(s)	134, 147
BsrDI	GCAATG	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	188, 280
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	333
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	100, 109, 235
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	3 cut(s)	100, 109, 235
BveI	ACCTGC	2 cut(s)	76, 307
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	362
CviAII	CATG	2 cut(s)	46, 284
CviJI	RGCY	3 cut(s)	22, 248, 364
CviKI_1	RGCY	3 cut(s)	22, 248, 364
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	49, 287
FaiI	YATR	2 cut(s)	47, 285
FatI	CATG	2 cut(s)	45, 283
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	3 cut(s)	107, 116, 242
Fsp4HI	GCNGC	1 cut(s)	344
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	49, 287
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HphI	GGTGA	4 cut(s)	186, 290, 326, 350
Hpy166II	GTNNAC	2 cut(s)	281, 293
Hpy188I	TCNGA	1 cut(s)	18
Hpy8I	GTNNAC	2 cut(s)	281, 293
HpyAV	CCTTC	5 cut(s)	107, 130, 207, 220, 281
HpyCH4V	TGCA	3 cut(s)	89, 173, 359
Hsp92II	CATG	2 cut(s)	49, 287
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	7 cut(s)	81, 201, 255, 261, 264, 312, 345
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	4 cut(s)	39, 76, 220, 346
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	45, 48, 63, 66, 238
MseI	TTAA	1 cut(s)	372
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	49, 287
NlaIV	GGNNCC	2 cut(s)	141, 249
PaqCI	CACCTGC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	141, 249
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	139
SalI	GTCGAC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	362
SetI	ASST	8 cut(s)	24, 70, 199, 208, 292, 301, 316, 325
SfaNI	GCATC	4 cut(s)	39, 76, 220, 346
SfcI	CTRYAG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	333
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	165, 300
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.