AT2G20940

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010849
Physical Location & Seq
Reverse (-)
9002001 .. 9002908
908 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20940.1

Sequence Viewer

Length: 390 bp
ATGGCGACTCGGCTCAAGGAGATTGTGAAGAAGTACGGAAAAGTCGCGCTTGGAGTCCATTTCTCGGTCTCCGGCGTCTCAATTAGTGGATTCTACATCGCGATCAAGAACAACGTCGATGTCGAATCGCTCTTGGAGAAATACCAAATCCCATGGTTCTCCAGCAAGGAAAACCCTAACCCTAGCCTCGATTTAAAGCTGGAAGAGCAAGGTTCCGTTACGAGCGATAACAAGACGAAACAGCTTGCGAAATCGGCCGGCGGAGCCCTAGCGTTGGCGGTTTTGTGCAATAAGGCGCTTTTTCCGATCAGAGTTCCGATCACGATGGCGTTGACTCCTCCAATCGCTAGATTCCTCAGGCAGAGGAAGATCCTCAAAACCGGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

129

Amino Acids

14.14

Weight (kDa)

9.95

Isoelectric Point (pI)

28.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 4 - 113 6.6e-29 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 47, 101
AciI CCGC 2 cut(s) 261, 278
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 2 cut(s) 255, 382
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 64, 274
AluBI AGCT 2 cut(s) 199, 244
AluI AGCT 2 cut(s) 199, 244
Alw26I GTCTC 2 cut(s) 73, 82
AlwI GGATC 1 cut(s) 364
AoxI GGCC 2 cut(s) 255, 382
AspLEI GCGC 2 cut(s) 49, 298
AxyI CCTNAGG 1 cut(s) 356
BanII GRGCYC 1 cut(s) 268
BccI CCATC 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 73, 82
BfaI CTAG 3 cut(s) 183, 269, 348
BfoI RGCGCY 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 214, 265
BpmI CTGGAG 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 274
Bse118I RCCGGY 2 cut(s) 257, 380
Bse21I CCTNAGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 64, 274
BseMII CTCAG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 327
BseX3I CGGCCG 1 cut(s) 255
Bsh1236I CGCG 2 cut(s) 47, 101
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 257, 384
BsiEI CGRYCG 1 cut(s) 258
BsiSI CCGG 3 cut(s) 72, 258, 381
BslI CCNNNNNNNGG 2 cut(s) 64, 274
BsmAI GTCTC 2 cut(s) 73, 82
BsmBI CGTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 257, 384
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 4 cut(s) 102, 306, 318, 369
Bsp19I CCATGG 1 cut(s) 152
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 2 cut(s) 261, 278
BspANI GGCC 2 cut(s) 257, 384
BspCNI CTCAG 1 cut(s) 369
BspFNI CGCG 2 cut(s) 47, 101
BspLI GGNNCC 2 cut(s) 214, 265
BspPI GGATC 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 73
BsrFI RCCGGY 2 cut(s) 257, 380
BssAI RCCGGY 2 cut(s) 257, 380
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 4 cut(s) 102, 306, 318, 369
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 246, 259
BstDEI CTNAG 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 152
BstFNI CGCG 2 cut(s) 47, 101
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 2 cut(s) 49, 298
BstKTI GATC 4 cut(s) 105, 309, 321, 372
BstMAI GTCTC 2 cut(s) 73, 82
BstMBI GATC 4 cut(s) 102, 306, 318, 369
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 3 cut(s) 205, 254, 263
BstUI CGCG 2 cut(s) 47, 101
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BstZI CGGCCG 1 cut(s) 255
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 2 cut(s) 257, 384
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 82
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 246, 259
CfoI GCGC 2 cut(s) 49, 298
Cfr10I RCCGGY 2 cut(s) 257, 380
CseI GACGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 153
CviJI RGCY 7 cut(s) 13, 186, 199, 244, 257, 266, 384
CviKI_1 RGCY 7 cut(s) 13, 186, 199, 244, 257, 266, 384
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 356
DpnI GATC 4 cut(s) 104, 308, 320, 371
DpnII GATC 4 cut(s) 102, 306, 318, 369
DraI TTTAAA 1 cut(s) 195
EaeI YGGCCR 2 cut(s) 255, 382
EagI CGGCCG 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 276
EclXI CGGCCG 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 73
Eco52I CGGCCG 1 cut(s) 255
Eco81I CCTNAGG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 1 cut(s) 156
FaiI YATR 1 cut(s) 154
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FatI CATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 268
FspBI CTAG 3 cut(s) 183, 269, 348
GlaI GCGC 2 cut(s) 48, 297
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 2 cut(s) 257, 384
HapII CCGG 3 cut(s) 72, 258, 381
HgaI GACGC 1 cut(s) 64
HhaI GCGC 2 cut(s) 49, 298
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 156
Hin6I GCGC 2 cut(s) 47, 296
HinP1I GCGC 2 cut(s) 47, 296
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HinfI GANTC 6 cut(s) 7, 54, 90, 125, 334, 351
HpaII CCGG 3 cut(s) 72, 258, 381
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 3 cut(s) 306, 311, 318
Hpy188III TCNNGA 3 cut(s) 100, 106, 322
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 254, 263
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 156
HspAI GCGC 2 cut(s) 47, 296
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 4 cut(s) 102, 306, 318, 369
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 5 cut(s) 85, 175, 185, 271, 343
MaeI CTAG 3 cut(s) 183, 269, 348
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 104, 308, 320, 371
MboI GATC 4 cut(s) 102, 306, 318, 369
MboII GAAGA 3 cut(s) 40, 215, 379
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 1 cut(s) 81
MlyI GAGTC 2 cut(s) 63, 328
MnlI CCTC 5 cut(s) 197, 348, 357, 365, 383
MroNI GCCGGC 1 cut(s) 257
MseI TTAA 1 cut(s) 194
MspI CCGG 3 cut(s) 72, 258, 381
MvnI CGCG 2 cut(s) 47, 101
MwoI GCNNNNNNNGC 3 cut(s) 205, 254, 263
NaeI GCCGGC 1 cut(s) 259
NcoI CCATGG 1 cut(s) 152
NdeII GATC 4 cut(s) 102, 306, 318, 369
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 1 cut(s) 156
NlaIV GGNNCC 2 cut(s) 214, 265
NruI TCGCGA 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 3 cut(s) 90, 125, 351
PleI GAGTC 2 cut(s) 62, 328
PpsI GAGTC 2 cut(s) 62, 328
PspN4I GGNNCC 2 cut(s) 214, 265
PsuI RGATCY 1 cut(s) 369
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 4 cut(s) 102, 306, 318, 369
SchI GAGTC 2 cut(s) 63, 328
SduI GDGCHC 1 cut(s) 268
SetI ASST 4 cut(s) 117, 201, 214, 246
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 81
SsiI CCGC 2 cut(s) 261, 278
SspMI CTAG 3 cut(s) 183, 269, 348
StyI CCWWGG 1 cut(s) 152
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 117, 123, 189
TaqII GACCGA 1 cut(s) 55
TasI AATT 1 cut(s) 81
TfiI GAWTC 3 cut(s) 90, 125, 351
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TspGWI ACGGA 2 cut(s) 51, 205
XspI CTAG 3 cut(s) 183, 269, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.