Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010849

Physical Location & Seq

Genomic Coordinates Forward (+)

14297285 .. 14297596

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCCTCCGTCGCCACCGGCGGTCGATTCAAAGAGCTCCTGAAGAAGTACGGCAAGGTCGCACTTGGCGTCCATTTCTCAGTCTCAGCTGCCTTAAAGATCGATCACGGGCCTCTATGTCGCCATCAAGAACAACGTCGACGTCGAATCGTTGCTGGACAAGCTTCACATGGGGAGCGTGTCCTCCAAAGACGAAAACCCAGAGAACCCACCTGTAATCTCCGATGGGTCGGAGTTTCGGGCCGGACCCATATCGGAAAATGGGCAATCGACGGCTGTGGTTGTGGAGAAGGAGAGGAGTCGGACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1279

Protein Analysis

104

Amino Acids

11.3

Weight (kDa)

10.04

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20940 AT2G20940
fragaria_vesca	FvH4_1g27981 FvH4_2g15480 FvH4_2g15480
malus_domestica	MD05G1123100.v1.1 MD05G1195600.v1.1 MD10G1125900.v1.1
prunus_persica	Prupe.8G167000_v2.0.a1
pyrus_communis	pycom10g10830
rosa_chinensis	RchiOBHm_Chr6g0278481
rosa_laevigata	RLG00000013225
rosa_multiflora	Rmu_sc0000258.1_g000005
rosa_roxburghii	Rroxscaffold_1G00014030 Rroxscaffold_1G00060160 Rroxscaffold_7G00189860
rosa_rugosa	Rorug06G0117200
rosa_samantha	Rh5CG138900 Rh6DG225000
rosa_wichuraiana	Rw6G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	139
AciI	CCGC	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	62
AcyI	GRCGYC	2 cut(s)	69, 142
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	3 cut(s)	37, 89, 164
AluI	AGCT	3 cut(s)	37, 89, 164
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	3 cut(s)	3, 110, 241
ApeKI	GCWGC	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	110, 241, 246
AvaII	GGWCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	132, 219
BceAI	ACGGC	2 cut(s)	67, 289
BcoDI	GTCTC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	3 cut(s)	110, 241, 246
BmiI	GGNNCC	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	102
BsaHI	GRCGYC	2 cut(s)	69, 142
Bse118I	RCCGGY	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	93, 99
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	5, 112, 243
BshVI	ATCGAT	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	18, 244
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	5, 112, 243
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	99, 103
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	3 cut(s)	5, 112, 243
BspCNI	CTCAG	2 cut(s)	92, 98
BspDI	ATCGAT	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	2 cut(s)	99, 103
BssNI	GRCGYC	2 cut(s)	69, 142
BstACI	GRCGYC	2 cut(s)	69, 142
BstDEI	CTNAG	2 cut(s)	79, 85
BstKTI	GATC	2 cut(s)	102, 106
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	99, 103
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 161
BstV1I	GCAGC	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	5, 112, 243
BsuTUI	ATCGAT	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	3 cut(s)	110, 241, 246
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	8 cut(s)	5, 37, 89, 112, 164, 243, 276, 309
CviKI_1	RGCY	8 cut(s)	5, 37, 89, 112, 164, 243, 276, 309
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	79, 85
DpnI	GATC	2 cut(s)	101, 105
DpnII	GATC	2 cut(s)	99, 103
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	1 cut(s)	173
FaiI	YATR	3 cut(s)	118, 171, 252
FatI	CATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	5, 112, 243
HapII	CCGG	2 cut(s)	18, 244
HgaI	GACGC	1 cut(s)	58
Hin1I	GRCGYC	2 cut(s)	69, 142
Hin1II	CATG	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	3 cut(s)	27, 147, 299
HpaII	CCGG	2 cut(s)	18, 244
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	4 cut(s)	224, 233, 257, 304
Hpy188III	TCNNGA	2 cut(s)	40, 128
Hpy8I	GTNNAC	1 cut(s)	140
Hpy99I	CGWCG	5 cut(s)	14, 141, 144, 147, 275
HpyAV	CCTTC	1 cut(s)	284
HpyCH4IV	ACGT	2 cut(s)	136, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 161
HpyF3I	CTNAG	2 cut(s)	79, 85
HpySE526I	ACGT	2 cut(s)	136, 142
Hsp92I	GRCGYC	2 cut(s)	69, 142
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	99, 103
LmnI	GCTCC	2 cut(s)	42, 175
LpnPI	CCDG	6 cut(s)	31, 53, 141, 214, 226, 257
Lsp1109I	GCAGC	1 cut(s)	76
MaeII	ACGT	2 cut(s)	136, 142
MalI	GATC	2 cut(s)	101, 105
MboI	GATC	2 cut(s)	99, 103
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	211, 282
MnlI	CCTC	4 cut(s)	16, 123, 194, 289
MseI	TTAA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	2 cut(s)	18, 244
MwoI	GCNNNNNNNGC	2 cut(s)	11, 161
NdeII	GATC	2 cut(s)	99, 103
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 142
PfeI	GAWTC	2 cut(s)	27, 147
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	3 cut(s)	110, 241, 246
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	99, 103
Sau96I	GGNCC	3 cut(s)	110, 241, 246
SchI	GAGTC	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	39, 60, 91, 139, 145, 166, 215
SgrAI	CRCCGGYG	1 cut(s)	17
SgrDI	CGTCGACG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	246
SsiI	CCGC	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	39
TaiI	ACGT	2 cut(s)	139, 145
TaqI	TCGA	5 cut(s)	25, 102, 139, 145, 270
TfiI	GAWTC	2 cut(s)	27, 147
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseI	GCWGC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	139
ZraI	GACGTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.