Rw6G019760

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010849
Physical Location & Seq
Forward (+)
39458651 .. 39460343
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019760.1

Sequence Viewer

Length: 609 bp
ATGATTCCAGCTCCAAGTAAAGTAAATAGTAACTCCCCACTCTTTTACTTTGGTCCCACATTTCTTGTCCAAAAGGCAGGCTCAATCATAAAAACAAAAGTTACCCCATTTTGTGCAGAGGACAAAAACCCTAGCCCCTCTCTCTCTCTCTCTCTCCAAAACCCCAAAACCACCAAGGCTCCTTCTTCTTCCTTCCTTCCTTTTGCGTCAATGGCCGGTGGTCGATTCCGCGAGCTTCTGAAGAAGTACGGCAAGGTCGCGCTGGGCGTCCACTGCTCCGTCTCCGCCGCCTCAATCGCCGGACTCTACGTCGCCATCAAGAACAACGTCGATGTGGAGTCCCTGATCGACAAGCTTCCCAATCTAAACCCTCTTAAAAACTCTCAAGAAGAGAAACCCACCTCCGAAAATGGGCCGTCGACGGCTGTGGTTGAGGAGAGGAAGAGGAATCGGACGGCGGAGCTCGCAGCCACCAGCGGCGGTGCTCTGGCATTGGCTTTTCTCTGCAACAAGGCTCTGTTTCCGATTCGGGTTCCGATTACGCTGGCGGTCACGCCTCCTTTGGCCAAGTTTTTGGCCAGGAGGAGGCTTATCAAGACCGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

202

Amino Acids

21.56

Weight (kDa)

10.05

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 75 - 186 2.3e-23 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 419
AccII CGCG 2 cut(s) 231, 260
AciI CCGC 7 cut(s) 229, 285, 288, 458, 477, 480, 548
AcoI YGGCCR 3 cut(s) 213, 564, 576
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 411, 585
AgeI ACCGGT 1 cut(s) 599
AhdI GACNNNNNGTC 1 cut(s) 308
AjnI CCWGG 1 cut(s) 578
AluBI AGCT 4 cut(s) 11, 235, 355, 463
AluI AGCT 4 cut(s) 11, 235, 355, 463
Alw21I GWGCWC 2 cut(s) 465, 487
Alw26I GTCTC 1 cut(s) 286
AoxI GGCC 4 cut(s) 213, 413, 564, 576
ApeKI GCWGC 1 cut(s) 467
AsiGI ACCGGT 1 cut(s) 599
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 53, 413
AvaII GGWCC 1 cut(s) 53
BalI TGGCCA 2 cut(s) 566, 578
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 465, 487
BbvI GCAGC 1 cut(s) 479
BccI CCATC 1 cut(s) 323
BceAI ACGGC 4 cut(s) 265, 400, 438, 471
BciT130I CCWGG 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 288, 468, 478
BlsI GCNGC 3 cut(s) 289, 469, 479
Bme1390I CCNGG 1 cut(s) 580
Bme18I GGWCC 1 cut(s) 53
BmeRI GACNNNNNGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 53, 413
BmiI GGNNCC 3 cut(s) 55, 180, 534
BmrFI CCNGG 1 cut(s) 580
BpuEI CTTGAG 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 585
Bse118I RCCGGY 2 cut(s) 215, 599
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 2 cut(s) 411, 585
BseRI GAGGAG 2 cut(s) 449, 598
BseXI GCAGC 1 cut(s) 479
BseYI CCCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 135
Bsh1236I CGCG 2 cut(s) 231, 260
BshFI GGCC 4 cut(s) 215, 415, 566, 578
BshTI ACCGGT 1 cut(s) 599
BsiHKAI GWGCWC 2 cut(s) 465, 487
BsiSI CCGG 3 cut(s) 216, 300, 600
BslFI GGGAC 2 cut(s) 39, 325
BslI CCNNNNNNNGG 2 cut(s) 411, 585
BsmAI GTCTC 1 cut(s) 286
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 2 cut(s) 39, 325
BsnI GGCC 4 cut(s) 215, 415, 566, 578
Bsp1286I GDGCHC 2 cut(s) 465, 487
Bsp143I GATC 1 cut(s) 345
BspACI CCGC 7 cut(s) 229, 285, 288, 458, 477, 480, 548
BspANI GGCC 4 cut(s) 215, 415, 566, 578
BspFNI CGCG 2 cut(s) 231, 260
BspLI GGNNCC 3 cut(s) 55, 180, 534
BsrFI RCCGGY 2 cut(s) 215, 599
BssAI RCCGGY 2 cut(s) 215, 599
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 345
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 580
Bst6I CTCTTC 2 cut(s) 384, 437
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 4 cut(s) 79, 233, 465, 546
BstFNI CGCG 2 cut(s) 231, 260
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 212, 273, 296, 464
BstNI CCWGG 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 578
BstUI CGCG 2 cut(s) 231, 260
BstV1I GCAGC 1 cut(s) 479
BstXI CCANNNNNNTGG 1 cut(s) 574
BsuRI GGCC 4 cut(s) 215, 415, 566, 578
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 4 cut(s) 79, 233, 465, 546
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 2 cut(s) 215, 599
Cfr13I GGNCC 2 cut(s) 53, 413
CseI GACGC 2 cut(s) 195, 256
Csp6I GTAC 1 cut(s) 247
CspAI ACCGGT 1 cut(s) 599
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviQI GTAC 1 cut(s) 247
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DriI GACNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 3 cut(s) 213, 564, 576
Eam1104I CTCTTC 2 cut(s) 384, 437
Eam1105I GACNNNNNGTC 1 cut(s) 308
EarI CTCTTC 2 cut(s) 384, 437
EciI GGCGGA 2 cut(s) 274, 473
Ecl136II GAGCTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 286
FaiI YATR 2 cut(s) 89, 607
FaqI GGGAC 2 cut(s) 39, 325
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 3 cut(s) 288, 468, 478
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 3 cut(s) 288, 468, 478
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 261
GluI GCNGC 3 cut(s) 288, 468, 478
GsaI CCCAGC 1 cut(s) 266
HaeIII GGCC 4 cut(s) 215, 415, 566, 578
HapII CCGG 3 cut(s) 216, 300, 600
HgaI GACGC 2 cut(s) 195, 256
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 267
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 6 cut(s) 4, 225, 303, 338, 448, 526
HpaII CCGG 3 cut(s) 216, 300, 600
Hpy166II GTNNAC 2 cut(s) 271, 420
Hpy188I TCNGA 5 cut(s) 240, 406, 453, 525, 537
Hpy188III TCNNGA 3 cut(s) 319, 386, 595
Hpy8I GTNNAC 2 cut(s) 271, 420
Hpy99I CGWCG 4 cut(s) 314, 332, 421, 424
HpyAV CCTTC 3 cut(s) 192, 202, 206
HpyCH4IV ACGT 2 cut(s) 309, 327
HpyCH4V TGCA 2 cut(s) 116, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 273, 296, 464
HpySE526I ACGT 2 cut(s) 309, 327
Hsp92I GRCGYC 1 cut(s) 267
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 4 cut(s) 16, 184, 281, 460
Lsp1109I GCAGC 1 cut(s) 479
MaeI CTAG 1 cut(s) 132
MaeII ACGT 2 cut(s) 309, 327
MaeIII GTNAC 3 cut(s) 29, 100, 550
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 5 cut(s) 177, 180, 253, 401, 454
MhlI GDGCHC 2 cut(s) 465, 487
MlsI TGGCCA 2 cut(s) 566, 578
MluNI TGGCCA 2 cut(s) 566, 578
MlyI GAGTC 2 cut(s) 297, 347
Mox20I TGGCCA 2 cut(s) 566, 578
MscI TGGCCA 2 cut(s) 566, 578
MseI TTAA 1 cut(s) 375
Msp20I TGGCCA 2 cut(s) 566, 578
MspA1I CMGCKG 1 cut(s) 477
MspI CCGG 3 cut(s) 216, 300, 600
MspR9I CCNGG 1 cut(s) 580
MvaI CCWGG 1 cut(s) 580
MvnI CGCG 2 cut(s) 231, 260
MwoI GCNNNNNNNGC 4 cut(s) 212, 273, 296, 464
NdeII GATC 1 cut(s) 345
NlaIV GGNNCC 3 cut(s) 55, 180, 534
NmuCI GTSAC 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 4 cut(s) 4, 225, 448, 526
PinAI ACCGGT 1 cut(s) 599
PkrI GCNGC 3 cut(s) 289, 469, 479
PleI GAGTC 2 cut(s) 297, 346
PpsI GAGTC 2 cut(s) 297, 346
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 3 cut(s) 55, 180, 534
PspPI GGNCC 2 cut(s) 53, 413
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacI GAGCTC 1 cut(s) 465
SalI GTCGAC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 3 cut(s) 288, 468, 478
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 2 cut(s) 53, 413
SchI GAGTC 2 cut(s) 297, 347
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 2 cut(s) 465, 487
SetI ASST 8 cut(s) 13, 237, 258, 312, 330, 357, 404, 465
SgrDI CGTCGACG 1 cut(s) 418
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
SsiI CCGC 7 cut(s) 229, 285, 288, 458, 477, 480, 548
SspMI CTAG 1 cut(s) 132
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 578
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 2 cut(s) 312, 330
TaqI TCGA 4 cut(s) 223, 330, 348, 419
TauI GCSGC 2 cut(s) 290, 480
TfiI GAWTC 4 cut(s) 4, 225, 448, 526
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 550
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.