RLG00000013225

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010849
Physical Location & Seq
Reverse (-)
28003325 .. 28004753
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013225

Sequence Viewer

Length: 366 bp
ATGGCCGGTGGTCGATTCCGCGAGCTTCTGAAGAAGTACGGAAAGGTCGCGCTGGGCGTCCACTGCTCCGTCTCCGCCGCGTCAATCGCCGGACTCTACGTCGCCATCAAGAACAACGTCGATGTGGAGTCGCTCATCGACAAGCTTCCCAATCTAAACCCTCTTAAAAACTCTCATGAAGAGAAACCCACCTCCGAAAATGGGCCGTCGACGGCTGTGGTGGAGGAGAGGAAGAGGAATCGGACGGCGGAGCTCGCAGCCACCAGCGGCGGAGGAGGCTTATCAAGACTGGTGTATGAATTGGGGAGTTCCTTCTACGGACGTCATGACATCGTCAAGTGGAATCCTGATGTTTGCACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

122

Amino Acids

13.06

Weight (kDa)

9.17

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 5 - 71 1.8e-12 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 209
AccII CGCG 3 cut(s) 21, 50, 80
AciI CCGC 6 cut(s) 19, 75, 78, 248, 267, 270
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 50
AcyI GRCGYC 2 cut(s) 57, 322
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 201
AhdI GACNNNNNGTC 1 cut(s) 98
AluBI AGCT 3 cut(s) 25, 145, 253
AluI AGCT 3 cut(s) 25, 145, 253
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 2 cut(s) 3, 203
ApeKI GCWGC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 113
BceAI ACGGC 3 cut(s) 190, 228, 261
BcoDI GTCTC 1 cut(s) 76
BisI GCNGC 3 cut(s) 78, 258, 268
BlsI GCNGC 3 cut(s) 79, 259, 269
BmeRI GACNNNNNGTC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 203
BsaHI GRCGYC 2 cut(s) 57, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 2 cut(s) 239, 288
BseXI GCAGC 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 3 cut(s) 21, 50, 80
BshFI GGCC 2 cut(s) 5, 205
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 6, 90
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 76
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 5, 205
Bsp1286I GDGCHC 1 cut(s) 255
BspACI CCGC 6 cut(s) 19, 75, 78, 248, 267, 270
BspANI GGCC 2 cut(s) 5, 205
BspFNI CGCG 3 cut(s) 21, 50, 80
BspHI TCATGA 2 cut(s) 175, 325
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 5
BssNI GRCGYC 2 cut(s) 57, 322
Bst6I CTCTTC 2 cut(s) 174, 227
BstACI GRCGYC 2 cut(s) 57, 322
BstC8I GCNNGC 2 cut(s) 23, 255
BstFNI CGCG 3 cut(s) 21, 50, 80
BstHHI GCGC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 63, 86, 254, 276
BstUI CGCG 3 cut(s) 21, 50, 80
BstV1I GCAGC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 5, 205
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 23, 255
CciI TCATGA 2 cut(s) 175, 325
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 2 cut(s) 46, 69
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 176, 326
CviJI RGCY 8 cut(s) 5, 25, 145, 205, 215, 253, 260, 279
CviKI_1 RGCY 8 cut(s) 5, 25, 145, 205, 215, 253, 260, 279
CviQI GTAC 1 cut(s) 37
DriI GACNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 174, 227
Eam1105I GACNNNNNGTC 1 cut(s) 98
EarI CTCTTC 2 cut(s) 174, 227
EciI GGCGGA 3 cut(s) 64, 263, 285
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 2 cut(s) 179, 329
FaiI YATR 3 cut(s) 177, 297, 327
FatI CATG 2 cut(s) 175, 325
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 78, 258, 268
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 78, 258, 268
GlaI GCGC 1 cut(s) 51
GluI GCNGC 3 cut(s) 78, 258, 268
GsaI CCCAGC 1 cut(s) 56
HaeIII GGCC 2 cut(s) 5, 205
HapII CCGG 2 cut(s) 6, 90
HgaI GACGC 2 cut(s) 46, 69
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 2 cut(s) 57, 322
Hin1II CATG 2 cut(s) 179, 329
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 5 cut(s) 15, 93, 128, 238, 343
HpaII CCGG 2 cut(s) 6, 90
Hpy166II GTNNAC 2 cut(s) 61, 210
Hpy188I TCNGA 3 cut(s) 30, 196, 243
Hpy188III TCNNGA 5 cut(s) 109, 176, 285, 326, 347
Hpy8I GTNNAC 2 cut(s) 61, 210
Hpy99I CGWCG 4 cut(s) 104, 122, 211, 214
HpyAV CCTTC 1 cut(s) 322
HpyCH4IV ACGT 3 cut(s) 99, 117, 322
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 86, 254, 276
HpySE526I ACGT 3 cut(s) 99, 117, 322
Hsp92I GRCGYC 2 cut(s) 57, 322
Hsp92II CATG 2 cut(s) 179, 329
HspAI GCGC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 71, 250
LpnPI CCDG 6 cut(s) 19, 38, 103, 275, 277, 360
Lsp1109I GCAGC 1 cut(s) 269
MaeII ACGT 3 cut(s) 99, 117, 322
MboII GAAGA 3 cut(s) 43, 191, 244
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 1 cut(s) 299
MlyI GAGTC 2 cut(s) 87, 137
MnlI CCTC 7 cut(s) 171, 202, 217, 222, 228, 266, 269
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 2 cut(s) 6, 90
MvnI CGCG 3 cut(s) 21, 50, 80
MwoI GCNNNNNNNGC 4 cut(s) 63, 86, 254, 276
NlaIII CATG 2 cut(s) 179, 329
PagI TCATGA 2 cut(s) 175, 325
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 3 cut(s) 15, 238, 343
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 3 cut(s) 79, 259, 269
PleI GAGTC 2 cut(s) 87, 136
PpsI GAGTC 2 cut(s) 87, 136
Psp124BI GAGCTC 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 3 cut(s) 78, 258, 268
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 87, 137
SduI GDGCHC 1 cut(s) 255
SetI ASST 8 cut(s) 27, 48, 102, 120, 147, 194, 255, 325
SgrDI CGTCGACG 1 cut(s) 208
Sse9I AATT 1 cut(s) 299
SsiI CCGC 6 cut(s) 19, 75, 78, 248, 267, 270
SstI GAGCTC 1 cut(s) 255
TaiI ACGT 3 cut(s) 102, 120, 325
TaqI TCGA 4 cut(s) 13, 120, 138, 209
TasI AATT 1 cut(s) 299
TauI GCSGC 2 cut(s) 80, 270
TfiI GAWTC 3 cut(s) 15, 238, 343
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 68
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 192, 312
TspGWI ACGGA 3 cut(s) 54, 58, 333
TspRI CASTG 1 cut(s) 68
Tth111I GACNNNGTC 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 209
ZraI GACGTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.