Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010849

Physical Location & Seq

Genomic Coordinates Forward (+)

19776273 .. 19779255

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27981.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTGACTGCCCTAGAAGAGTTGACTCCTCCATGCTGACGGCACAACCCTTGCCTTCCCGCCACCGCCACTACAACCACCACCTCCTTGACCCCCAAGAGAGAGCTCGTCGTCGCAGCATTCTCCAACCATCTCTGTCATGCAAGCAAGGAAGTTCGTCGACCATTATCAGAATCAAGTTGTGCAACTCGGATCGGTTCAAATCGACCCGATCTGAGGACAGGGAATACCAACCATGCCGCCGTGTAGCAATCACCTTTCGGAGACCTCAGATCCGGCAGGATTCAACCCTTTGTCTCCCTTCCAAGTCTTCCTCTCCCCCTGTCCAAACCGCTCATGAAAAAGGCAAGGAGGCGCTAGGAGTAGTCCACTGCTTTGTCTCGGCCACCTCCATCGTAGAGAGCAATATCAATGTGGAGTCGATGATTGGGAAGCTTCCCAACCTAAACCCTCTCAAAAACTCCAAGGAAGAGAAACCCACCTCGGAAGTTGGGTCGTCGGCAGCTATGGTTGAGGAGAAGAGGAATCGAACGGCGGAGCTGCCGCCCACCAACGGCGACGCTTTAGCTAGAATGAAGCTTATCAAGACTGGTACATGGTTTTTCTTGGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1279

Protein Analysis

206

Amino Acids

23.07

Weight (kDa)

9.89

Isoelectric Point (pI)

68.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20940 AT2G20940
fragaria_vesca	FvH4_1g27981 FvH4_2g15480 FvH4_2g15480
malus_domestica	MD05G1123100.v1.1 MD05G1195600.v1.1 MD10G1125900.v1.1
prunus_persica	Prupe.8G167000_v2.0.a1
pyrus_communis	pycom10g10830
rosa_chinensis	RchiOBHm_Chr6g0278481
rosa_laevigata	RLG00000013225
rosa_multiflora	Rmu_sc0000258.1_g000005
rosa_roxburghii	Rroxscaffold_1G00014030 Rroxscaffold_1G00060160 Rroxscaffold_7G00189860
rosa_rugosa	Rorug06G0117200
rosa_samantha	Rh5CG138900 Rh6DG225000
rosa_wichuraiana	Rw6G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	161
AciI	CCGC	6 cut(s)	61, 67, 241, 333, 536, 545
AclWI	GGATC	2 cut(s)	201, 268
AcoI	YGGCCR	1 cut(s)	384
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	2 cut(s)	217, 554
AgsI	TTSAA	2 cut(s)	202, 288
AluBI	AGCT	6 cut(s)	107, 436, 506, 541, 569, 580
AluI	AGCT	6 cut(s)	107, 436, 506, 541, 569, 580
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	3 cut(s)	259, 302, 385
AlwI	GGATC	2 cut(s)	201, 268
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	3 cut(s)	117, 503, 541
AspLEI	GCGC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	129, 515, 528
BccI	CCATC	2 cut(s)	139, 401
BceAI	ACGGC	4 cut(s)	57, 228, 549, 571
BcoDI	GTCTC	3 cut(s)	259, 302, 385
BfaI	CTAG	3 cut(s)	15, 359, 570
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	5 cut(s)	118, 241, 504, 542, 545
BlsI	GCNGC	5 cut(s)	119, 242, 505, 543, 546
BpiI	GAAGAC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	465, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 554
Bse1I	ACTGG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	465, 483
BseLI	CCNNNNNNNGG	2 cut(s)	217, 554
BseMII	CTCAG	2 cut(s)	207, 284
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	2 cut(s)	19, 530
BseXI	GCAGC	3 cut(s)	129, 515, 528
BshFI	GGCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	217, 554
BsmAI	GTCTC	3 cut(s)	259, 302, 385
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	193, 212, 273
BspACI	CCGC	6 cut(s)	61, 67, 241, 333, 536, 545
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	2 cut(s)	208, 283
BspHI	TCATGA	1 cut(s)	337
BspPI	GGATC	2 cut(s)	201, 268
BspTNI	GGTCTC	1 cut(s)	259
BsrBI	CCGCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	465, 483
BssMI	GATC	3 cut(s)	193, 212, 273
BssT1I	CCWWGG	1 cut(s)	465
Bst6I	CTCTTC	3 cut(s)	13, 465, 515
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	216, 270
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	196, 215, 276
BstMAI	GTCTC	3 cut(s)	259, 302, 385
BstMBI	GATC	3 cut(s)	193, 212, 273
BstV1I	GCAGC	3 cut(s)	129, 515, 528
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	358
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	5 cut(s)	34, 141, 237, 338, 597
CviJI	RGCY	7 cut(s)	107, 386, 436, 506, 541, 569, 580
CviKI_1	RGCY	7 cut(s)	107, 386, 436, 506, 541, 569, 580
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	2 cut(s)	216, 270
DpnI	GATC	3 cut(s)	195, 214, 275
DpnII	GATC	3 cut(s)	193, 212, 273
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	3 cut(s)	13, 465, 515
EarI	CTCTTC	3 cut(s)	13, 465, 515
EciI	GGCGGA	1 cut(s)	551
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	5 cut(s)	37, 144, 240, 341, 600
FaiI	YATR	6 cut(s)	35, 142, 238, 339, 509, 598
FatI	CATG	5 cut(s)	33, 140, 236, 337, 596
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	5 cut(s)	118, 241, 504, 542, 545
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	5 cut(s)	118, 241, 504, 542, 545
FspBI	CTAG	3 cut(s)	15, 359, 570
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	5 cut(s)	118, 241, 504, 542, 545
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	277
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	5 cut(s)	37, 144, 240, 341, 600
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	3 cut(s)	7, 25, 162
HindII	GTYRAC	3 cut(s)	7, 25, 162
HindIII	AAGCTT	2 cut(s)	434, 578
HinfI	GANTC	5 cut(s)	26, 174, 284, 419, 526
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	4 cut(s)	7, 25, 162, 370
Hpy188I	TCNGA	6 cut(s)	173, 193, 217, 264, 273, 487
Hpy188III	TCNNGA	2 cut(s)	338, 586
Hpy8I	GTNNAC	4 cut(s)	7, 25, 162, 370
Hpy99I	CGWCG	5 cut(s)	114, 117, 163, 502, 563
HpyAV	CCTTC	2 cut(s)	66, 312
HpyCH4V	TGCA	2 cut(s)	144, 186
HpyF3I	CTNAG	2 cut(s)	216, 270
Hsp92II	CATG	5 cut(s)	37, 144, 240, 341, 600
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	193, 212, 273
LmnI	GCTCC	1 cut(s)	538
LpnPI	CCDG	5 cut(s)	208, 266, 290, 336, 576
Lsp1109I	GCAGC	3 cut(s)	129, 515, 528
MaeI	CTAG	3 cut(s)	15, 359, 570
MalI	GATC	3 cut(s)	195, 214, 275
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	3 cut(s)	193, 212, 273
MboII	GAAGA	4 cut(s)	30, 303, 482, 532
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	20, 428
MmeI	TCCRAC	1 cut(s)	151
MspI	CCGG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	120
NdeII	GATC	3 cut(s)	193, 212, 273
NlaIII	CATG	5 cut(s)	37, 144, 240, 341, 600
NmeAIII	GCCGAG	1 cut(s)	362
PagI	TCATGA	1 cut(s)	337
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	174, 284, 526
PkrI	GCNGC	5 cut(s)	119, 242, 505, 543, 546
PleI	GAGTC	2 cut(s)	20, 427
PpsI	GAGTC	2 cut(s)	20, 427
Psp124BI	GAGCTC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	160
SatI	GCNGC	5 cut(s)	118, 241, 504, 542, 545
Sau3AI	GATC	3 cut(s)	193, 212, 273
SchI	GAGTC	2 cut(s)	20, 428
SduI	GDGCHC	1 cut(s)	109
SsiI	CCGC	6 cut(s)	61, 67, 241, 333, 536, 545
SspMI	CTAG	3 cut(s)	15, 359, 570
SstI	GAGCTC	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	465
TaqI	TCGA	4 cut(s)	161, 206, 422, 529
TauI	GCSGC	2 cut(s)	243, 547
TfiI	GAWTC	3 cut(s)	174, 284, 526
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	3 cut(s)	117, 503, 541
TspDTI	ATGAA	2 cut(s)	354, 590
TspRI	CASTG	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	3 cut(s)	15, 359, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.