RchiOBHm_Chr6g0278481

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010849
Physical Location & Seq
Forward (+)
41583655 .. 41585689
2035 bp
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UTR
Exon/CDS
Intron
PRQ24980

Sequence Viewer

Length: 399 bp
ATGGCCGGTGGTCGATTCCGCGAGCTTCTGAAGAAGTACGGCAAGGTCGCGCTGGGCGTCCACTGCTCCGTCTCCGCCGCCTCAATCGCCGGACTCTATGTCGCCATCAAGAACAACGTCGATGTGGAGTCCCTGATCGACAAGCTTCCCAATCTAAACCCTCTTAAAAAATCTCATGAAGAGAAACCCACCTCCGAAAATGGGCCGTCGACGGCTGTGGTTGAAGAGAGGAAGAGGAATCGGACGGCGGAGCTCGCAGCCACCAGCGGCGGTGCTCTGGCATTGGCTTTTCTCTGCAACAAGGCTCTGTTTCCGATTCGGGTTCCGATTACGCTGGCGGTCACGCCTCCTTTGGCCAAGTTTTTGGCCAGGAGGAGGCTTATCAAGACCGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

132

Amino Acids

14.15

Weight (kDa)

10.13

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 5 - 116 6.1e-24 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 209
AccII CGCG 2 cut(s) 21, 50
AciI CCGC 7 cut(s) 19, 75, 78, 248, 267, 270, 338
AcoI YGGCCR 3 cut(s) 3, 354, 366
AcuI CTGAAG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 201, 375
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 1 cut(s) 224
AhdI GACNNNNNGTC 1 cut(s) 98
AjnI CCWGG 1 cut(s) 368
AluBI AGCT 3 cut(s) 25, 145, 253
AluI AGCT 3 cut(s) 25, 145, 253
Alw21I GWGCWC 2 cut(s) 255, 277
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 4 cut(s) 3, 203, 354, 366
ApeKI GCWGC 1 cut(s) 257
AsiGI ACCGGT 1 cut(s) 389
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 203
BalI TGGCCA 2 cut(s) 356, 368
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 277
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 113
BceAI ACGGC 4 cut(s) 55, 190, 228, 261
BciT130I CCWGG 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 76
BisI GCNGC 3 cut(s) 78, 258, 268
BlsI GCNGC 3 cut(s) 79, 259, 269
Bme1390I CCNGG 1 cut(s) 370
BmeRI GACNNNNNGTC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 370
BsaHI GRCGYC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 375
Bse118I RCCGGY 2 cut(s) 5, 389
BseBI CCWGG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 201, 375
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 21, 50
BshFI GGCC 4 cut(s) 5, 205, 356, 368
BshTI ACCGGT 1 cut(s) 389
BsiHKAI GWGCWC 2 cut(s) 255, 277
BsiSI CCGG 3 cut(s) 6, 90, 390
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 201, 375
BsmAI GTCTC 1 cut(s) 76
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 4 cut(s) 5, 205, 356, 368
Bsp1286I GDGCHC 2 cut(s) 255, 277
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 7 cut(s) 19, 75, 78, 248, 267, 270, 338
BspANI GGCC 4 cut(s) 5, 205, 356, 368
BspFNI CGCG 2 cut(s) 21, 50
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 324
BsrFI RCCGGY 2 cut(s) 5, 389
BssAI RCCGGY 2 cut(s) 5, 389
BssMI GATC 1 cut(s) 135
BssNI GRCGYC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 370
Bst6I CTCTTC 3 cut(s) 174, 219, 227
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 23, 255, 336
BstFNI CGCG 2 cut(s) 21, 50
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 3 cut(s) 63, 86, 254
BstNI CCWGG 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 368
BstUI CGCG 2 cut(s) 21, 50
BstV1I GCAGC 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 364
BsuRI GGCC 4 cut(s) 5, 205, 356, 368
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 3 cut(s) 23, 255, 336
CciI TCATGA 1 cut(s) 175
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 2 cut(s) 5, 389
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 37
CspAI ACCGGT 1 cut(s) 389
CviAII CATG 1 cut(s) 176
CviQI GTAC 1 cut(s) 37
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
DriI GACNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 3 cut(s) 3, 354, 366
Eam1104I CTCTTC 3 cut(s) 174, 219, 227
Eam1105I GACNNNNNGTC 1 cut(s) 98
EarI CTCTTC 3 cut(s) 174, 219, 227
EciI GGCGGA 2 cut(s) 64, 263
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 1 cut(s) 179
FaiI YATR 3 cut(s) 99, 177, 397
FaqI GGGAC 1 cut(s) 115
FatI CATG 1 cut(s) 175
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 78, 258, 268
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 78, 258, 268
GlaI GCGC 1 cut(s) 51
GluI GCNGC 3 cut(s) 78, 258, 268
GsaI CCCAGC 1 cut(s) 56
HaeIII GGCC 4 cut(s) 5, 205, 356, 368
HapII CCGG 3 cut(s) 6, 90, 390
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 5 cut(s) 15, 93, 128, 238, 316
HpaII CCGG 3 cut(s) 6, 90, 390
Hpy166II GTNNAC 2 cut(s) 61, 210
Hpy188I TCNGA 5 cut(s) 30, 196, 243, 315, 327
Hpy188III TCNNGA 3 cut(s) 109, 176, 385
Hpy8I GTNNAC 2 cut(s) 61, 210
Hpy99I CGWCG 3 cut(s) 122, 211, 214
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 86, 254
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 71, 250
LpnPI CCDG 9 cut(s) 19, 38, 103, 146, 263, 277, 320, 355, 382
Lsp1109I GCAGC 1 cut(s) 269
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 4 cut(s) 43, 191, 236, 244
MhlI GDGCHC 2 cut(s) 255, 277
MlsI TGGCCA 2 cut(s) 356, 368
MluNI TGGCCA 2 cut(s) 356, 368
MlyI GAGTC 2 cut(s) 87, 137
MnlI CCTC 8 cut(s) 91, 171, 202, 222, 228, 357, 366, 369
Mox20I TGGCCA 2 cut(s) 356, 368
MscI TGGCCA 2 cut(s) 356, 368
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 2 cut(s) 356, 368
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 3 cut(s) 6, 90, 390
MspR9I CCNGG 1 cut(s) 370
MvaI CCWGG 1 cut(s) 370
MvnI CGCG 2 cut(s) 21, 50
MwoI GCNNNNNNNGC 3 cut(s) 63, 86, 254
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 340
PagI TCATGA 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 3 cut(s) 15, 238, 316
PinAI ACCGGT 1 cut(s) 389
PkrI GCNGC 3 cut(s) 79, 259, 269
PleI GAGTC 2 cut(s) 87, 136
PpsI GAGTC 2 cut(s) 87, 136
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 3 cut(s) 78, 258, 268
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 87, 137
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 2 cut(s) 255, 277
SetI ASST 6 cut(s) 27, 48, 120, 147, 194, 255
SgrDI CGTCGACG 1 cut(s) 208
SsiI CCGC 7 cut(s) 19, 75, 78, 248, 267, 270, 338
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 368
TaiI ACGT 1 cut(s) 120
TaqI TCGA 4 cut(s) 13, 120, 138, 209
TauI GCSGC 2 cut(s) 80, 270
TfiI GAWTC 3 cut(s) 15, 238, 316
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.