Rroxscaffold_1G00014030

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010849
Physical Location & Seq
Forward (+)
17338917 .. 17339192
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014030.1

Sequence Viewer

Length: 276 bp
ATGGACGTCCATTACTCCGTCCGTACCGTCTCAATCGCGAGACTCTACGTCGCCATCAAGAACAACATCGATGTGGAGTTGCTAATCGACGGGCTTCCCAATCTAAACCCTCTTAAAACCTGTCATGAAGACAAACCCACCTCGAAAATGGGTCATCCACGGTTGTGGGCGAGGAGACGAAGAGGAATTGGATGGCGGAGCTTGCAGCCACCTAAGGCGGTGCTGCGGCCTCTAGCATTGGCTTTTCTCTACAACAATTCTTTGCTTCGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

91

Amino Acids

10.47

Weight (kDa)

10.67

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 9
AccII CGCG 1 cut(s) 38
AciI CCGC 3 cut(s) 196, 218, 226
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 25
AhdI GACNNNNNGTC 1 cut(s) 47
AleI CACNNNNGTG 1 cut(s) 163
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw26I GTCTC 3 cut(s) 34, 34, 169
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 205, 223
AxyI CCTNAGG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 210, 217
BccI CCATC 2 cut(s) 62, 186
BcoDI GTCTC 3 cut(s) 34, 34, 169
BfaI CTAG 1 cut(s) 233
BisI GCNGC 3 cut(s) 206, 224, 227
BlsI GCNGC 3 cut(s) 207, 225, 228
BmeRI GACNNNNNGTC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 135
Bsa29I ATCGAT 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 2 cut(s) 154, 197
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 210, 217
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 229
BshVI ATCGAT 1 cut(s) 69
BsmAI GTCTC 3 cut(s) 34, 34, 169
BsmBI CGTCTC 2 cut(s) 34, 169
BsnI GGCC 1 cut(s) 229
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 3 cut(s) 196, 218, 226
BspANI GGCC 1 cut(s) 229
BspDI ATCGAT 1 cut(s) 69
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 158
BssNI GRCGYC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 28, 162
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 154, 197
BstFNI CGCG 1 cut(s) 38
BstMAI GTCTC 3 cut(s) 34, 34, 169
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 210, 217
BstV2I GAAGAC 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 1 cut(s) 229
BsuTUI ATCGAT 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 154, 197
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 203
CciI TCATGA 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 69
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 125
CviJI RGCY 5 cut(s) 94, 201, 208, 229, 242
CviKI_1 RGCY 5 cut(s) 94, 201, 208, 229, 242
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 213
DriI GACNNNNNGTC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 213
Esp3I CGTCTC 2 cut(s) 34, 169
FaeI CATG 1 cut(s) 128
FaiI YATR 1 cut(s) 126
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 206, 224, 227
FokI GGATG 2 cut(s) 141, 204
Fsp4HI GCNGC 3 cut(s) 206, 224, 227
FspBI CTAG 1 cut(s) 233
GluI GCNGC 3 cut(s) 206, 224, 227
HaeIII GGCC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 128
HinfI GANTC 1 cut(s) 42
Hpy188III TCNNGA 3 cut(s) 37, 58, 125
Hpy99I CGWCG 2 cut(s) 53, 92
HpyCH4III ACNGT 2 cut(s) 28, 162
HpyCH4IV ACGT 2 cut(s) 6, 48
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 2 cut(s) 6, 48
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 128
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 1 cut(s) 133
Lsp1109I GCAGC 2 cut(s) 210, 217
MaeI CTAG 1 cut(s) 233
MaeII ACGT 2 cut(s) 6, 48
MboII GAAGA 2 cut(s) 140, 192
MluCI AATT 2 cut(s) 186, 256
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 5 cut(s) 120, 151, 165, 176, 240
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 2 cut(s) 71, 163
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 202
NlaIII CATG 1 cut(s) 128
NruI TCGCGA 1 cut(s) 38
OliI CACNNNNGTG 1 cut(s) 163
PagI TCATGA 1 cut(s) 124
PkrI GCNGC 3 cut(s) 207, 225, 228
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 2 cut(s) 71, 163
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 206, 224, 227
SchI GAGTC 1 cut(s) 36
SetI ASST 6 cut(s) 9, 51, 122, 143, 203, 214
SmiMI CAYNNNNRTG 2 cut(s) 71, 163
Sse9I AATT 2 cut(s) 186, 256
SsiI CCGC 3 cut(s) 196, 218, 226
SspMI CTAG 1 cut(s) 233
TaaI ACNGT 2 cut(s) 28, 162
TaiI ACGT 2 cut(s) 9, 51
TaqI TCGA 4 cut(s) 69, 87, 143, 268
TasI AATT 2 cut(s) 186, 256
TauI GCSGC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 2 cut(s) 205, 223
TspDTI ATGAA 1 cut(s) 141
TspGWI ACGGA 2 cut(s) 7, 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 1 cut(s) 233
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.