Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

OG0010849

Physical Location & Seq

Genomic Coordinates Forward (+)

18278 .. 18917

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000258.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggccggtggtcgattccgcgagcttctgaagaagtacggcaaggtcgcgctgggcgtccactgctccgtctccgccgcctcaatcgccggactctacgtcgccatcaagaacaacgtcgatgtggagtccctgatcgacaagcttcccaatctaaaccctcttaaaagctctcatgaagagtctccaaaaccccaaaactaccaaggctccttcttcttccttccttccttttgcgtcaatggccggtggtcgattccgcgagcttctgaagaaaacaacgtcgatgtggagtccctgatcgacaagcttcccaatctaaaccctcttaaaagctctcatgaagagaaacccacctccgaaaatgggccgtcgacggctgtggttgaggagaggaagaggaatcggacggcggagctcgcagccaccagcggcggtgctctggcattggcttttctctgcaacaaggctctgtttccgattcgggttccgattacgctggcggtcacgcctcctttggccaagtttttggccaggaggaggcttatcaagaccggtgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1279

Protein Analysis

187

Amino Acids

20.35

Weight (kDa)

9.57

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20940 AT2G20940
fragaria_vesca	FvH4_1g27981 FvH4_2g15480 FvH4_2g15480
malus_domestica	MD05G1123100.v1.1 MD05G1195600.v1.1 MD10G1125900.v1.1
prunus_persica	Prupe.8G167000_v2.0.a1
pyrus_communis	pycom10g10830
rosa_chinensis	RchiOBHm_Chr6g0278481
rosa_laevigata	RLG00000013225
rosa_multiflora	Rmu_sc0000258.1_g000005
rosa_roxburghii	Rroxscaffold_1G00014030 Rroxscaffold_1G00060160 Rroxscaffold_7G00189860
rosa_rugosa	Rorug06G0117200
rosa_samantha	Rh5CG138900 Rh6DG225000
rosa_wichuraiana	Rw6G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	3 cut(s)	21, 50, 262
AciI	CCGC	8 cut(s)	19, 75, 78, 260, 413, 432, 435, 503
AcoI	YGGCCR	4 cut(s)	3, 244, 519, 531
AcuI	CTGAAG	2 cut(s)	50, 291
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	366, 540
AgeI	ACCGGT	1 cut(s)	554
AhdI	GACNNNNNGTC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	7 cut(s)	25, 145, 171, 266, 310, 336, 418
AluI	AGCT	7 cut(s)	25, 145, 171, 266, 310, 336, 418
Alw21I	GWGCWC	2 cut(s)	420, 442
Alw26I	GTCTC	2 cut(s)	76, 189
AoxI	GGCC	5 cut(s)	3, 244, 368, 519, 531
ApeKI	GCWGC	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	368
BalI	TGGCCA	2 cut(s)	521, 533
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	420, 442
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	4 cut(s)	55, 355, 393, 426
BciT130I	CCWGG	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	76, 189
BisI	GCNGC	3 cut(s)	78, 423, 433
BlsI	GCNGC	3 cut(s)	79, 424, 434
Bme1390I	CCNGG	1 cut(s)	535
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	211, 489
BmrFI	CCNGG	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 540
Bse118I	RCCGGY	3 cut(s)	5, 246, 554
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	366, 540
BseRI	GAGGAG	2 cut(s)	404, 553
BseXI	GCAGC	1 cut(s)	434
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	3 cut(s)	21, 50, 262
BshFI	GGCC	5 cut(s)	5, 246, 370, 521, 533
BshTI	ACCGGT	1 cut(s)	554
BsiHKAI	GWGCWC	2 cut(s)	420, 442
BsiSI	CCGG	4 cut(s)	6, 90, 247, 555
BslFI	GGGAC	2 cut(s)	115, 280
BslI	CCNNNNNNNGG	2 cut(s)	366, 540
BsmAI	GTCTC	2 cut(s)	76, 189
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	115, 280
BsnI	GGCC	5 cut(s)	5, 246, 370, 521, 533
Bsp1286I	GDGCHC	2 cut(s)	420, 442
Bsp143I	GATC	2 cut(s)	135, 300
BspACI	CCGC	8 cut(s)	19, 75, 78, 260, 413, 432, 435, 503
BspANI	GGCC	5 cut(s)	5, 246, 370, 521, 533
BspFNI	CGCG	3 cut(s)	21, 50, 262
BspHI	TCATGA	2 cut(s)	175, 340
BspLI	GGNNCC	2 cut(s)	211, 489
BsrFI	RCCGGY	3 cut(s)	5, 246, 554
BssAI	RCCGGY	3 cut(s)	5, 246, 554
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	2 cut(s)	135, 300
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	535
Bst6I	CTCTTC	3 cut(s)	174, 339, 392
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	4 cut(s)	23, 264, 420, 501
BstFNI	CGCG	3 cut(s)	21, 50, 262
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	138, 303
BstMAI	GTCTC	2 cut(s)	76, 189
BstMBI	GATC	2 cut(s)	135, 300
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 86, 243, 419
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstUI	CGCG	3 cut(s)	21, 50, 262
BstV1I	GCAGC	1 cut(s)	434
BstXI	CCANNNNNNTGG	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	5, 246, 370, 521, 533
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	4 cut(s)	23, 264, 420, 501
CciI	TCATGA	2 cut(s)	175, 340
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	3 cut(s)	5, 246, 554
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	2 cut(s)	46, 226
Csp6I	GTAC	1 cut(s)	37
CspAI	ACCGGT	1 cut(s)	554
CviAII	CATG	2 cut(s)	176, 341
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	2 cut(s)	137, 302
DpnII	GATC	2 cut(s)	135, 300
DriI	GACNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	4 cut(s)	3, 244, 519, 531
Eam1104I	CTCTTC	3 cut(s)	174, 339, 392
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EarI	CTCTTC	3 cut(s)	174, 339, 392
EciI	GGCGGA	2 cut(s)	64, 428
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	50, 291
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	2 cut(s)	179, 344
FaiI	YATR	3 cut(s)	177, 342, 562
FaqI	GGGAC	2 cut(s)	115, 280
FatI	CATG	2 cut(s)	175, 340
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	3 cut(s)	78, 423, 433
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	3 cut(s)	78, 423, 433
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	78, 423, 433
GsaI	CCCAGC	1 cut(s)	56
HaeIII	GGCC	5 cut(s)	5, 246, 370, 521, 533
HapII	CCGG	4 cut(s)	6, 90, 247, 555
HgaI	GACGC	2 cut(s)	46, 226
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	179, 344
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HindIII	AAGCTT	2 cut(s)	143, 308
HinfI	GANTC	8 cut(s)	15, 93, 128, 182, 256, 293, 403, 481
HpaII	CCGG	4 cut(s)	6, 90, 247, 555
Hpy166II	GTNNAC	2 cut(s)	61, 375
Hpy188I	TCNGA	6 cut(s)	30, 271, 361, 408, 480, 492
Hpy188III	TCNNGA	4 cut(s)	109, 176, 341, 550
Hpy8I	GTNNAC	2 cut(s)	61, 375
Hpy99I	CGWCG	5 cut(s)	104, 122, 287, 376, 379
HpyAV	CCTTC	3 cut(s)	223, 233, 237
HpyCH4IV	ACGT	3 cut(s)	99, 117, 282
HpyCH4V	TGCA	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 86, 243, 419
HpySE526I	ACGT	3 cut(s)	99, 117, 282
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	179, 344
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	135, 300
LmnI	GCTCC	3 cut(s)	71, 215, 415
Lsp1109I	GCAGC	1 cut(s)	434
MaeII	ACGT	3 cut(s)	99, 117, 282
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	137, 302
MboI	GATC	2 cut(s)	135, 300
MboII	GAAGA	7 cut(s)	43, 191, 208, 211, 284, 356, 409
MhlI	GDGCHC	2 cut(s)	420, 442
MlsI	TGGCCA	2 cut(s)	521, 533
MluNI	TGGCCA	2 cut(s)	521, 533
MlyI	GAGTC	4 cut(s)	87, 137, 191, 302
Mox20I	TGGCCA	2 cut(s)	521, 533
MscI	TGGCCA	2 cut(s)	521, 533
MseI	TTAA	2 cut(s)	165, 330
Msp20I	TGGCCA	2 cut(s)	521, 533
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	4 cut(s)	6, 90, 247, 555
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	3 cut(s)	21, 50, 262
MwoI	GCNNNNNNNGC	4 cut(s)	63, 86, 243, 419
NdeII	GATC	2 cut(s)	135, 300
NlaIII	CATG	2 cut(s)	179, 344
NlaIV	GGNNCC	2 cut(s)	211, 489
NmuCI	GTSAC	1 cut(s)	505
PagI	TCATGA	2 cut(s)	175, 340
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	4 cut(s)	15, 256, 403, 481
PinAI	ACCGGT	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	79, 424, 434
PleI	GAGTC	4 cut(s)	87, 136, 190, 301
PpsI	GAGTC	4 cut(s)	87, 136, 190, 301
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	211, 489
PspPI	GGNCC	1 cut(s)	368
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	165, 330
SatI	GCNGC	3 cut(s)	78, 423, 433
Sau3AI	GATC	2 cut(s)	135, 300
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	4 cut(s)	87, 137, 191, 302
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	2 cut(s)	420, 442
SgrDI	CGTCGACG	1 cut(s)	373
SsiI	CCGC	8 cut(s)	19, 75, 78, 260, 413, 432, 435, 503
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	205
TaiI	ACGT	3 cut(s)	102, 120, 285
TaqI	TCGA	7 cut(s)	13, 120, 138, 254, 285, 303, 374
TauI	GCSGC	2 cut(s)	80, 435
TfiI	GAWTC	4 cut(s)	15, 256, 403, 481
Tru1I	TTAA	2 cut(s)	165, 330
Tru9I	TTAA	2 cut(s)	165, 330
TscAI	CASTG	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	192, 357
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.