Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Forward (+)

9827104 .. 9829537

Gene Structure 2434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCGAAAGCTAGGGTTTATACAGATGTTAACGTTGTTCGTCCTAAAGAGTATTGGGACTACGAGTCTCTCGTTGTTCAATGGGGTCATCAAGATGATTATGAGGTTGTGAGAAAAGTTGGTAGAGGAAAATACAGTGAAGTTTTCGAAGGCAAAAACGTCAATACGAATGAGCGTTGCGTTATCAAGATCCTCAAACCCGTAAAAAAGAAGAAGATAAAGAGAGAGATCAAAATACTTCAGAACCTATGTGGTGGACCAAATATTGTTAAGCTGTATGATATTGTTAGAGATGAGCACTCCAAAACACCTAGCTTGGTATTTGAGTTTGTCAACAGTGTGGACTTTAAAGTATTGTATCCAACATTGACTGATTACGATATCCGGTACTATATTTATGAGCTTCTGAAGGCATTGGATTTCTGTCACTCTCAAGGAATAATGCATAGGGATGTTAAGCCTCATAATGTCATGATAGATCATCAGCTGCGTAAACTTCGTCTGATAGATTGGGGCCTTGCTGAGTTTTACCATCCCGGAAAAGAGTATAATGTTCGCGTGGCCTCGAGATACTTCAAGGGTCCCGAGCTTTTAGTTGATCTACAGGATTATGACTATTCTTTAGACATGTGGAGTCTTGGTTGCATGTTTGCTGGCATGATATTCCGTAAGGAACCGTTCTTTTATGGCCATGATAATCATGATCAACTTGTCAAAATTGCCAAGGTGTTGGGAACCAATGAGTTAGATCATTACCTAAACAAATATCAGCTAGATCTTGACCCTCAACTGGAAGCACTTGTTGGAAGACATGTCCCCAAACCATGGTCCAAGTTTATCAACGCGGACAACCAACATTTGGTCTCACCTGAGGCAATTGATTTTCTCGATAAGCTTCTTCAGTATGATCATCAAGACAGATTAACCGCAAGAGAAGCCATGGATCATCCATACTTCGCTCAAGTTAAAGCCGCAGAGAGCAGCAGACTACGAACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010212 GO:0010225 GO:0010332 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048511 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

333

Amino Acids

39.31

Weight (kDa)

7.7

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	34 - 319	2.3e-64	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 235	1.6e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	825, 859
AccII	CGCG	2 cut(s)	558, 845
AciI	CCGC	3 cut(s)	845, 927, 972
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	2 cut(s)	184, 951
AcoI	YGGCCR	1 cut(s)	688
AcuI	CTGAAG	3 cut(s)	224, 428, 884
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	790, 825, 859
AflIII	ACRYGT	2 cut(s)	627, 811
AgsI	TTSAA	2 cut(s)	80, 577
AhdI	GACNNNNNGTC	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AluBI	AGCT	8 cut(s)	11, 274, 315, 403, 487, 589, 772, 895
AluI	AGCT	8 cut(s)	11, 274, 315, 403, 487, 589, 772, 895
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	72, 868
AlwI	GGATC	2 cut(s)	184, 951
Ama87I	CYCGRG	2 cut(s)	565, 584
AoxI	GGCC	3 cut(s)	514, 561, 688
ApeKI	GCWGC	2 cut(s)	487, 981
AspS9I	GGNCC	4 cut(s)	257, 514, 581, 828
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	858
AsuII	TTCGAA	1 cut(s)	147
AvaI	CYCGRG	2 cut(s)	565, 584
AvaII	GGWCC	3 cut(s)	257, 581, 828
AxyI	CCTNAGG	1 cut(s)	870
BalI	TGGCCA	1 cut(s)	690
BbsI	GAAGAC	1 cut(s)	814
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	474, 993
BccI	CCATC	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	369
BclI	TGATCA	2 cut(s)	703, 907
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	2 cut(s)	72, 868
BfaI	CTAG	3 cut(s)	12, 312, 773
BfmI	CTRYAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	3 cut(s)	488, 972, 982
BlsI	GCNGC	3 cut(s)	489, 973, 983
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	3 cut(s)	257, 581, 828
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmeT110I	CYCGRG	2 cut(s)	565, 584
BmgT120I	GGNCC	4 cut(s)	257, 514, 581, 828
BmiI	GGNNCC	5 cut(s)	515, 582, 583, 675, 736
BmrFI	CCNGG	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	814
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	417, 945
BpuMI	CCSGG	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	868
BsaJI	CCNNGG	3 cut(s)	723, 824, 939
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bsc4I	CCNNNNNNNGG	3 cut(s)	790, 825, 859
Bse1I	ACTGG	1 cut(s)	795
Bse21I	CCTNAGG	1 cut(s)	870
BseDI	CCNNGG	3 cut(s)	723, 824, 939
BseGI	GGATG	3 cut(s)	457, 532, 946
BseLI	CCNNNNNNNGG	3 cut(s)	790, 825, 859
BseMII	CTCAG	2 cut(s)	513, 861
BseNI	ACTGG	1 cut(s)	795
BseXI	GCAGC	2 cut(s)	474, 993
Bsh1236I	CGCG	2 cut(s)	558, 845
BshFI	GGCC	3 cut(s)	516, 563, 690
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	2 cut(s)	565, 584
BsiSI	CCGG	2 cut(s)	385, 537
BslFI	GGGAC	3 cut(s)	71, 567, 800
BslI	CCNNNNNNNGG	3 cut(s)	790, 825, 859
BsmAI	GTCTC	2 cut(s)	72, 868
BsmFI	GGGAC	3 cut(s)	71, 567, 800
BsnI	GGCC	3 cut(s)	516, 563, 690
Bso31I	GGTCTC	1 cut(s)	868
BsoBI	CYCGRG	2 cut(s)	565, 584
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	9 cut(s)	189, 228, 478, 598, 703, 748, 775, 907, 943
Bsp19I	CCATGG	2 cut(s)	824, 939
BspACI	CCGC	3 cut(s)	845, 927, 972
BspANI	GGCC	3 cut(s)	516, 563, 690
BspCNI	CTCAG	2 cut(s)	514, 862
BspFNI	CGCG	2 cut(s)	558, 845
BspHI	TCATGA	2 cut(s)	471, 700
BspLI	GGNNCC	5 cut(s)	515, 582, 583, 675, 736
BspPI	GGATC	2 cut(s)	184, 951
BspT104I	TTCGAA	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	868
BsrI	ACTGG	1 cut(s)	795
BssECI	CCNNGG	3 cut(s)	723, 824, 939
BssMI	GATC	9 cut(s)	189, 228, 478, 598, 703, 748, 775, 907, 943
BssT1I	CCWWGG	3 cut(s)	723, 824, 939
Bst4CI	ACNGT	3 cut(s)	137, 338, 678
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	3 cut(s)	522, 870, 996
BstDSI	CCRYGG	2 cut(s)	824, 939
BstF5I	GGATG	3 cut(s)	457, 532, 946
BstFNI	CGCG	2 cut(s)	558, 845
BstKTI	GATC	9 cut(s)	192, 231, 481, 601, 706, 751, 778, 910, 946
BstMAI	GTCTC	2 cut(s)	72, 868
BstMBI	GATC	9 cut(s)	189, 228, 478, 598, 703, 748, 775, 907, 943
BstMWI	GCNNNNNNNGC	1 cut(s)	935
BstNSI	RCATGY	3 cut(s)	631, 649, 815
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	602
BstUI	CGCG	2 cut(s)	558, 845
BstV1I	GCAGC	2 cut(s)	474, 993
BstV2I	GAAGAC	1 cut(s)	814
BstX2I	RGATCY	2 cut(s)	189, 775
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	2 cut(s)	189, 775
Bsu36I	CCTNAGG	1 cut(s)	870
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	3 cut(s)	516, 563, 690
BtgI	CCRYGG	2 cut(s)	824, 939
BtsCI	GGATG	3 cut(s)	457, 532, 946
BtsIMutI	CAGTG	2 cut(s)	142, 343
Cac8I	GCNNGC	1 cut(s)	655
CciI	TCATGA	2 cut(s)	471, 700
Cfr13I	GGNCC	4 cut(s)	257, 514, 581, 828
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	9 cut(s)	472, 628, 646, 658, 692, 701, 812, 825, 940
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	3 cut(s)	522, 870, 996
DpnI	GATC	9 cut(s)	191, 230, 480, 600, 705, 750, 777, 909, 945
DpnII	GATC	9 cut(s)	189, 228, 478, 598, 703, 748, 775, 907, 943
DraI	TTTAAA	1 cut(s)	349
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	688
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	723, 824, 939
Eco31I	GGTCTC	1 cut(s)	868
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	3 cut(s)	257, 581, 828
Eco57I	CTGAAG	3 cut(s)	224, 428, 884
Eco81I	CCTNAGG	1 cut(s)	870
Eco88I	CYCGRG	2 cut(s)	565, 584
EcoO109I	RGGNCCY	2 cut(s)	514, 581
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	3 cut(s)	723, 824, 939
EcoT22I	ATGCAT	1 cut(s)	447
ErhI	CCWWGG	3 cut(s)	723, 824, 939
FaeI	CATG	9 cut(s)	475, 631, 649, 661, 695, 704, 815, 828, 943
FaqI	GGGAC	3 cut(s)	71, 567, 800
FatI	CATG	9 cut(s)	471, 627, 645, 657, 691, 700, 811, 824, 939
FbaI	TGATCA	2 cut(s)	703, 907
Fnu4HI	GCNGC	3 cut(s)	488, 972, 982
FokI	GGATG	3 cut(s)	464, 519, 933
Fsp4HI	GCNGC	3 cut(s)	488, 972, 982
FspBI	CTAG	3 cut(s)	12, 312, 773
GluI	GCNGC	3 cut(s)	488, 972, 982
HaeIII	GGCC	3 cut(s)	516, 563, 690
HapII	CCGG	2 cut(s)	385, 537
Hin1II	CATG	9 cut(s)	475, 631, 649, 661, 695, 704, 815, 828, 943
HincII	GTYRAC	2 cut(s)	31, 334
HindII	GTYRAC	2 cut(s)	31, 334
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	2 cut(s)	65, 634
HpaI	GTTAAC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	385, 537
HphI	GGTGA	1 cut(s)	858
Hpy166II	GTNNAC	5 cut(s)	31, 257, 334, 343, 494
Hpy188I	TCNGA	3 cut(s)	243, 408, 504
Hpy188III	TCNNGA	9 cut(s)	92, 187, 472, 567, 584, 701, 779, 887, 914
Hpy8I	GTNNAC	5 cut(s)	31, 257, 334, 343, 494
HpyAV	CCTTC	2 cut(s)	143, 403
HpyCH4III	ACNGT	3 cut(s)	137, 338, 678
HpyCH4IV	ACGT	2 cut(s)	33, 159
HpyCH4V	TGCA	2 cut(s)	445, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	935
HpyF3I	CTNAG	3 cut(s)	522, 870, 996
HpySE526I	ACGT	2 cut(s)	33, 159
Hsp92II	CATG	9 cut(s)	475, 631, 649, 661, 695, 704, 815, 828, 943
KflI	GGGWCCC	1 cut(s)	581
Ksp22I	TGATCA	2 cut(s)	703, 907
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	9 cut(s)	189, 228, 478, 598, 703, 748, 775, 907, 943
LpnPI	CCDG	6 cut(s)	398, 550, 590, 639, 776, 882
Lsp1109I	GCAGC	2 cut(s)	474, 993
MaeI	CTAG	3 cut(s)	12, 312, 773
MaeII	ACGT	2 cut(s)	33, 159
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	9 cut(s)	191, 230, 480, 600, 705, 750, 777, 909, 945
MboI	GATC	9 cut(s)	189, 228, 478, 598, 703, 748, 775, 907, 943
MboII	GAAGA	4 cut(s)	223, 226, 819, 890
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	2 cut(s)	189, 775
MhlI	GDGCHC	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	2 cut(s)	717, 876
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	2 cut(s)	74, 643
MmeI	TCCRAC	2 cut(s)	386, 784
MnlI	CCTC	7 cut(s)	97, 119, 203, 471, 574, 795, 865
Mox20I	TGGCCA	1 cut(s)	690
Mph1103I	ATGCAT	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	6 cut(s)	30, 270, 348, 456, 923, 966
MslI	CAYNNNNRTG	2 cut(s)	93, 450
Msp20I	TGGCCA	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	2 cut(s)	385, 537
MspR9I	CCNGG	1 cut(s)	537
MunI	CAATTG	1 cut(s)	876
MvnI	CGCG	2 cut(s)	558, 845
MwoI	GCNNNNNNNGC	1 cut(s)	935
NciI	CCSGG	1 cut(s)	537
NcoI	CCATGG	2 cut(s)	824, 939
NdeII	GATC	9 cut(s)	189, 228, 478, 598, 703, 748, 775, 907, 943
NlaIII	CATG	9 cut(s)	475, 631, 649, 661, 695, 704, 815, 828, 943
NlaIV	GGNNCC	5 cut(s)	515, 582, 583, 675, 736
NmuCI	GTSAC	1 cut(s)	425
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	3 cut(s)	631, 649, 815
NspV	TTCGAA	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	565
PagI	TCATGA	2 cut(s)	471, 700
PciI	ACATGT	2 cut(s)	627, 811
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflMI	CCANNNNNTGG	2 cut(s)	825, 859
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	489, 973, 983
PleI	GAGTC	2 cut(s)	73, 642
PpsI	GAGTC	2 cut(s)	73, 642
PpuMI	RGGWCCY	1 cut(s)	581
PscI	ACATGT	2 cut(s)	627, 811
Psp1406I	AACGTT	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	581
PspN4I	GGNNCC	5 cut(s)	515, 582, 583, 675, 736
PspPI	GGNCC	4 cut(s)	257, 514, 581, 828
PspPPI	RGGWCCY	1 cut(s)	581
PsuI	RGATCY	2 cut(s)	189, 775
PvuII	CAGCTG	1 cut(s)	487
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	2 cut(s)	93, 450
SaqAI	TTAA	6 cut(s)	30, 270, 348, 456, 923, 966
SatI	GCNGC	3 cut(s)	488, 972, 982
Sau3AI	GATC	9 cut(s)	189, 228, 478, 598, 703, 748, 775, 907, 943
Sau96I	GGNCC	4 cut(s)	257, 514, 581, 828
SchI	GAGTC	2 cut(s)	74, 643
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	602
Sfr274I	CTCGAG	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	3 cut(s)	257, 581, 828
SlaI	CTCGAG	1 cut(s)	565
SmiMI	CAYNNNNRTG	2 cut(s)	93, 450
SmlI	CTYRAG	3 cut(s)	432, 565, 960
SmoI	CTYRAG	3 cut(s)	432, 565, 960
Sse9I	AATT	2 cut(s)	717, 876
SsiI	CCGC	3 cut(s)	845, 927, 972
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	3 cut(s)	12, 312, 773
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	3 cut(s)	723, 824, 939
TaaI	ACNGT	3 cut(s)	137, 338, 678
TaiI	ACGT	2 cut(s)	36, 162
TaqI	TCGA	4 cut(s)	5, 147, 566, 888
TasI	AATT	2 cut(s)	717, 876
TauI	GCSGC	1 cut(s)	974
Tru1I	TTAA	6 cut(s)	30, 270, 348, 456, 923, 966
Tru9I	TTAA	6 cut(s)	30, 270, 348, 456, 923, 966
TscAI	CASTG	2 cut(s)	142, 343
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	2 cut(s)	487, 981
Tsp45I	GTSAC	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	656
TspRI	CASTG	2 cut(s)	142, 343
Van91I	CCANNNNNTGG	2 cut(s)	825, 859
VpaK11BI	GGWCC	3 cut(s)	257, 581, 828
XceI	RCATGY	3 cut(s)	631, 649, 815
XhoI	CTCGAG	1 cut(s)	565
XspI	CTAG	3 cut(s)	12, 312, 773
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.