Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Reverse (-)

4157380 .. 4158524

Gene Structure 1145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGAGGTGTAGGGAAATATTTCTCCACGTTGATCGGTTTCCTGCTACTGTGCATCCTCGTCGCTTTCCGTGCTTCGGTTGCGCACCTCCCTAACCTACACACCCCTCCCCTTATAGAGCAGCCCAAGCCCACCCAGATCTGGCCTCCCAATCTCGCAGCCATGTCTATAGCTCGGGTCTACGCCGACATCAACGTCCTTCGCCCCAAGGAGTACCGGGACTACGAGTCCCTCACCGTCCAATGGGGGATATACAGCGAGGTCTTTGAAGGAATTAATGTCAATACTAATGAGCGCTGCATAATCAAAATCCTCAAGCCTGTGAAGAAGAAGACGATTAAGAGGGAGATTAAGATTCTGCAGAACCTTTATGGGGGCCCAAATGTAGTCAAGCTTCTTGATATTGTTCGAGATCAGCACTGGGAAACTCTGAGTTTGGTTTTCGAGTATGTTAATAGTACAGATTTCAAAGTTCTGTACCCGACACTGACTGATTACGACATTCGCTACTACATATATGAGCTACTCAGGGCATTGGACTACTGCCATTCACAAGGAGTAATGCATAGAGATGTTAAGCCTAACAATGTTATGATAGACTATGAGTTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCATCCTGGCCAGAAGTATAATGTCCGAGTGGCATCAAGATACTTTAAAGGTTCTGAACTTCTAGTTGATCTGCAAGACTACGACTATTCCTTGGACATATGGAGCCTTGGTTGTATGTTTGCTGGAATGATATTTCGCAAGGAGCCTTTCTTTTATGGTCACGACAACCATGATCAGCTGAGGCCATTGATTTTCTGGATATATAAACTCCTTCGGTTTGATCATCAAGACAGGCTAACTGCAAAAGAAGCCATTGGCCATCCATATTTCTCCCAAGTGAGGGCAGCAGAAAGCAGCAGGATGCAGACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

321

Amino Acids

37.83

Weight (kDa)

8.8

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	82 - 262	2.2e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	83 - 307	1.2e-48	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
Acc16I	TGCGCA	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	180
AcoI	YGGCCR	2 cut(s)	658, 907
AcsI	RAATTY	1 cut(s)	644
AfaI	GTAC	3 cut(s)	215, 460, 479
AfeI	AGCGCT	1 cut(s)	296
AfiI	CCNNNNNNNGG	6 cut(s)	76, 141, 243, 373, 930, 931
AgsI	TTSAA	2 cut(s)	269, 469
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	4 cut(s)	173, 394, 523, 829
AluI	AGCT	4 cut(s)	173, 394, 523, 829
Ama87I	CYCGRG	1 cut(s)	174
Aor51HI	AGCGCT	1 cut(s)	296
AoxI	GGCC	5 cut(s)	143, 376, 658, 833, 907
ApaI	GGGCCC	1 cut(s)	380
ApeKI	GCWGC	5 cut(s)	121, 158, 297, 935, 945
ApoI	RAATTY	1 cut(s)	644
AseI	ATTAAT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	85, 297
AspS9I	GGNCC	2 cut(s)	376, 377
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	380
BalI	TGGCCA	2 cut(s)	660, 909
BanII	GRGCYC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	830
BbvI	GCAGC	5 cut(s)	133, 170, 284, 947, 957
BccI	CCATC	2 cut(s)	660, 918
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	657
BclI	TGATCA	2 cut(s)	823, 871
BcnI	CCSGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	2 cut(s)	168, 359
BfoI	RGCGCY	1 cut(s)	298
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	5 cut(s)	122, 159, 298, 936, 946
BlsI	GCNGC	5 cut(s)	123, 160, 299, 937, 947
Bme1390I	CCNGG	2 cut(s)	218, 657
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	376, 377
BmiI	GGNNCC	4 cut(s)	377, 378, 755, 795
BmrFI	CCNGG	2 cut(s)	218, 657
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	3 cut(s)	63, 692, 942
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	830
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	207, 741, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	745, 775
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 141, 243, 373, 930, 931
Bse1I	ACTGG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	3 cut(s)	207, 741, 757
BseGI	GGATG	4 cut(s)	54, 652, 910, 957
BseLI	CCNNNNNNNGG	6 cut(s)	76, 141, 243, 373, 930, 931
BseMII	CTCAG	3 cut(s)	422, 541, 821
BseNI	ACTGG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	133, 170, 284, 947, 957
BshFI	GGCC	5 cut(s)	145, 378, 660, 835, 909
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	217
BslFI	GGGAC	2 cut(s)	214, 233
BslI	CCNNNNNNNGG	6 cut(s)	76, 141, 243, 373, 930, 931
BsmFI	GGGAC	2 cut(s)	214, 233
BsnI	GGCC	5 cut(s)	145, 378, 660, 835, 909
BsoBI	CYCGRG	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	6 cut(s)	33, 138, 412, 718, 823, 871
BspANI	GGCC	5 cut(s)	145, 378, 660, 835, 909
BspCNI	CTCAG	3 cut(s)	423, 540, 822
BspLI	GGNNCC	4 cut(s)	377, 378, 755, 795
BspMAI	CTGCAG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	207, 741, 757
BssMI	GATC	6 cut(s)	33, 138, 412, 718, 823, 871
BssT1I	CCWWGG	3 cut(s)	207, 741, 757
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	2 cut(s)	51, 238
BstDEI	CTNAG	3 cut(s)	431, 527, 830
BstF5I	GGATG	4 cut(s)	54, 652, 910, 957
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	85, 297
BstKTI	GATC	6 cut(s)	36, 141, 415, 721, 826, 874
BstMBI	GATC	6 cut(s)	33, 138, 412, 718, 823, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 80, 127, 899
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	216, 655
BstSFI	CTRYAG	2 cut(s)	168, 359
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	5 cut(s)	133, 170, 284, 947, 957
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	5 cut(s)	145, 378, 660, 835, 909
BtsCI	GGATG	4 cut(s)	54, 652, 910, 957
BtsIMutI	CAGTG	2 cut(s)	418, 485
CfoI	GCGC	2 cut(s)	85, 297
Cfr13I	GGNCC	2 cut(s)	376, 377
Csp6I	GTAC	3 cut(s)	214, 459, 478
CviAII	CATG	2 cut(s)	163, 821
CviQI	GTAC	3 cut(s)	214, 459, 478
DdeI	CTNAG	3 cut(s)	431, 527, 830
DpnI	GATC	6 cut(s)	35, 140, 414, 720, 825, 873
DpnII	GATC	6 cut(s)	33, 138, 412, 718, 823, 871
DraI	TTTAAA	1 cut(s)	697
DrdI	GACNNNNNNGTC	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	2 cut(s)	658, 907
Eam1105I	GACNNNNNGTC	1 cut(s)	226
Eco130I	CCWWGG	3 cut(s)	207, 741, 757
Eco24I	GRGCYC	1 cut(s)	380
Eco47III	AGCGCT	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	3 cut(s)	207, 741, 757
EcoT22I	ATGCAT	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	3 cut(s)	207, 741, 757
FaeI	CATG	2 cut(s)	166, 824
FaqI	GGGAC	2 cut(s)	214, 233
FatI	CATG	2 cut(s)	162, 820
FauNDI	CATATG	1 cut(s)	749
FbaI	TGATCA	2 cut(s)	823, 871
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	5 cut(s)	122, 159, 298, 936, 946
FokI	GGATG	3 cut(s)	41, 639, 897
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	5 cut(s)	122, 159, 298, 936, 946
FspBI	CTAG	1 cut(s)	713
FspI	TGCGCA	1 cut(s)	84
GlaI	GCGC	2 cut(s)	84, 296
GluI	GCNGC	5 cut(s)	122, 159, 298, 936, 946
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	5 cut(s)	145, 378, 660, 835, 909
HapII	CCGG	1 cut(s)	217
HhaI	GCGC	2 cut(s)	85, 297
Hin1II	CATG	2 cut(s)	166, 824
Hin6I	GCGC	2 cut(s)	83, 295
HinP1I	GCGC	2 cut(s)	83, 295
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	2 cut(s)	227, 355
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	432, 677, 706
Hpy188III	TCNNGA	6 cut(s)	398, 410, 687, 812, 847, 878
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	209, 263, 872
HpyCH4III	ACNGT	2 cut(s)	51, 238
HpyCH4IV	ACGT	2 cut(s)	29, 195
HpyCH4V	TGCA	7 cut(s)	54, 300, 361, 565, 724, 893, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 80, 127, 899
HpyF3I	CTNAG	3 cut(s)	431, 527, 830
HpySE526I	ACGT	2 cut(s)	29, 195
Hsp92II	CATG	2 cut(s)	166, 824
HspAI	GCGC	2 cut(s)	83, 295
Ksp22I	TGATCA	2 cut(s)	823, 871
Kzo9I	GATC	6 cut(s)	33, 138, 412, 718, 823, 871
LmnI	GCTCC	2 cut(s)	753, 793
Lsp1109I	GCAGC	5 cut(s)	133, 170, 284, 947, 957
LweI	GCATC	3 cut(s)	63, 692, 942
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	2 cut(s)	29, 195
MaeIII	GTNAC	1 cut(s)	809
MalI	GATC	6 cut(s)	35, 140, 414, 720, 825, 873
MboI	GATC	6 cut(s)	33, 138, 412, 718, 823, 871
MboII	GAAGA	3 cut(s)	337, 340, 343
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	380
MlsI	TGGCCA	2 cut(s)	660, 909
MluCI	AATT	2 cut(s)	273, 644
MluNI	TGGCCA	2 cut(s)	660, 909
MlyI	GAGTC	1 cut(s)	236
Mox20I	TGGCCA	2 cut(s)	660, 909
Mph1103I	ATGCAT	1 cut(s)	567
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	2 cut(s)	660, 909
MseI	TTAA	6 cut(s)	276, 339, 351, 453, 576, 696
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	2 cut(s)	660, 909
MspA1I	CMGCKG	1 cut(s)	829
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	2 cut(s)	218, 657
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	4 cut(s)	71, 80, 127, 899
NciI	CCSGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	749
NdeII	GATC	6 cut(s)	33, 138, 412, 718, 823, 871
NlaIII	CATG	2 cut(s)	166, 824
NlaIV	GGNNCC	4 cut(s)	377, 378, 755, 795
NmuCI	GTSAC	1 cut(s)	809
NsbI	TGCGCA	1 cut(s)	84
NsiI	ATGCAT	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	5 cut(s)	123, 160, 299, 937, 947
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	4 cut(s)	377, 378, 755, 795
PspOMI	GGGCCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	376, 377
PstI	CTGCAG	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	829
RsaI	GTAC	3 cut(s)	215, 460, 479
RsaNI	GTAC	3 cut(s)	214, 459, 478
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	6 cut(s)	276, 339, 351, 453, 576, 696
SatI	GCNGC	5 cut(s)	122, 159, 298, 936, 946
Sau3AI	GATC	6 cut(s)	33, 138, 412, 718, 823, 871
Sau96I	GGNCC	2 cut(s)	376, 377
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	218, 657
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	3 cut(s)	63, 692, 942
SfcI	CTRYAG	2 cut(s)	168, 359
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	273, 644
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	2 cut(s)	216, 655
StyI	CCWWGG	3 cut(s)	207, 741, 757
TaaI	ACNGT	2 cut(s)	51, 238
TaiI	ACGT	2 cut(s)	32, 198
TaqI	TCGA	2 cut(s)	409, 444
TasI	AATT	2 cut(s)	273, 644
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	6 cut(s)	276, 339, 351, 453, 576, 696
Tru9I	TTAA	6 cut(s)	276, 339, 351, 453, 576, 696
TscAI	CASTG	2 cut(s)	425, 492
TseFI	GTSAC	1 cut(s)	809
TseI	GCWGC	5 cut(s)	121, 158, 297, 935, 945
Tsp45I	GTSAC	1 cut(s)	809
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	425, 492
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	843
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	713
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.