Rh6BG117600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003499
Physical Location & Seq
Reverse (-)
18146002 .. 18159759
13758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG117600.1

Sequence Viewer

Length: 195 bp
ATGAACACAATAAAGGAAGGAGCTATACACTCCATAAAAGAAAGGGGGGATATAAAAGATCTCATCGGGTTCGTTTTTGACATATCTGTCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGTGGTATGTAGCAACACTTCACATGGTTGGGAGGTACATTTTCTGTTTTCATTGCTGCAGATAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.24

Weight (kDa)

4.87

Isoelectric Point (pI)

9.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 181
BarI GAAGNNNNNNTAC 4 cut(s) 9, 41, 127, 159
BbvI GCAGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 182
BglII AGATCT 1 cut(s) 58
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 1 cut(s) 95
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 58
BspANI GGCC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 176
BssMI GATC 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 161
CviAII CATG 2 cut(s) 103, 149
CviJI RGCY 2 cut(s) 23, 95
CviKI_1 RGCY 2 cut(s) 23, 95
CviQI GTAC 1 cut(s) 161
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Eco147I AGGCCT 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 106, 152
FaiI YATR 7 cut(s) 26, 35, 53, 83, 104, 133, 150
FatI CATG 2 cut(s) 102, 148
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 2 cut(s) 106, 152
HpyAV CCTTC 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 184
Hsp92II CATG 2 cut(s) 106, 152
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 20, 106
LpnPI CCDG 2 cut(s) 77, 104
Lsp1109I GCAGC 1 cut(s) 168
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MflI RGATCY 1 cut(s) 58
MnlI CCTC 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 106, 152
PceI AGGCCT 1 cut(s) 95
PkrI GCNGC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PstI CTGCAG 1 cut(s) 186
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 92
SetI ASST 2 cut(s) 25, 162
SfcI CTRYAG 1 cut(s) 182
SgeI CNNG 6 cut(s) 79, 103, 104, 115, 122, 161
SseBI AGGCCT 1 cut(s) 95
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 90
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 17, 132, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.