Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Reverse (-)

20139728 .. 20141586

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCATAGGGATGTCAAGCCTCACAATGTTATGATAGACCATGAATTGCGCAAACTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCACCCTGGCAAGGAATACAATGTCCGCGTAGCATCCAGATACTTTAAGGGCCCTGAACTTCTAGTTGACCTGCAAGATTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGTATGTTTGCGGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCATGACAACCATGACCAGCTGGTCAAAATTGCCAAGGTACTTGGGACTGATGAGCTGAATGCATATCTGAGCAAGTATCATTTAGAGCTTGATCCTCAACTTGATGCTCTGGTTGGGAGGCACAGCAGAAAGCCCTGGTCTAAGTTTATTAATGCAGATAATCAACATCTAGTTTCTCCAGAGGCCATCGATTTTCTGGATAAACTTCTTCGGTATGATCATCAAGACAGACTAACTGCAAAAGAGGCAATGGGCCATCCATATTTCTCGCAAGTGAGGGCAGCAGAAAGCAGCAGGATGCGGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

186

Amino Acids

21.81

Weight (kDa)

6.59

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
Acc16I	TGCGCA	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	168
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	115, 212, 550
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	186
AjnI	CCWGG	2 cut(s)	94, 383
AluBI	AGCT	3 cut(s)	268, 304, 337
AluI	AGCT	3 cut(s)	268, 304, 337
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	3 cut(s)	139, 432, 502
ApaI	GGGCCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	530, 540
ApoI	RAATTY	1 cut(s)	83
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	3 cut(s)	139, 140, 502
BaeGI	GKGCMC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	542, 552
BccI	CCATC	2 cut(s)	443, 513
BciT130I	CCWGG	2 cut(s)	96, 385
BclI	TGATCA	1 cut(s)	466
BfaI	CTAG	2 cut(s)	152, 419
BfuAI	ACCTGC	1 cut(s)	168
BisI	GCNGC	2 cut(s)	531, 541
BlsI	GCNGC	2 cut(s)	532, 542
Bme1390I	CCNGG	2 cut(s)	96, 385
BmgT120I	GGNCC	3 cut(s)	139, 140, 502
BmiI	GGNNCC	3 cut(s)	141, 194, 234
BmrFI	CCNGG	2 cut(s)	96, 385
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	131, 343, 537
BmuI	ACTGGG	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	4 cut(s)	94, 196, 282, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	96, 385
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	4 cut(s)	94, 196, 282, 383
BseGI	GGATG	4 cut(s)	16, 122, 505, 552
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	542, 552
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	141, 434, 504
BshVI	ATCGAT	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	141, 434, 504
Bsp120I	GGGCCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	340, 466
BspACI	CCGC	3 cut(s)	115, 212, 550
BspANI	GGCC	3 cut(s)	141, 434, 504
BspCNI	CTCAG	1 cut(s)	309
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	141, 194, 234
BspMI	ACCTGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	4 cut(s)	94, 196, 282, 383
BssMI	GATC	2 cut(s)	340, 466
BssT1I	CCWWGG	2 cut(s)	196, 282
Bst2UI	CCWGG	2 cut(s)	96, 385
BstDEI	CTNAG	2 cut(s)	317, 390
BstF5I	GGATG	4 cut(s)	16, 122, 505, 552
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	343, 469
BstMBI	GATC	2 cut(s)	340, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 494
BstNI	CCWGG	2 cut(s)	96, 385
BstNSI	RCATGY	1 cut(s)	190
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	94, 383
BstSLI	GKGCMC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	542, 552
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	141, 434, 504
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	16, 122, 505, 552
BveI	ACCTGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	139, 140, 502
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	4 cut(s)	41, 187, 251, 260
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	2 cut(s)	317, 390
DpnI	GATC	2 cut(s)	342, 468
DpnII	GATC	2 cut(s)	340, 466
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	196, 282
Eco24I	GRGCYC	1 cut(s)	143
EcoO109I	RGGNCCY	2 cut(s)	139, 140
EcoRII	CCWGG	2 cut(s)	94, 383
EcoT14I	CCWWGG	2 cut(s)	196, 282
EcoT22I	ATGCAT	2 cut(s)	6, 313
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	2 cut(s)	196, 282
FaeI	CATG	4 cut(s)	44, 190, 254, 263
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	40, 186, 250, 259
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	531, 541
FokI	GGATG	3 cut(s)	23, 109, 492
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	531, 541
FspBI	CTAG	2 cut(s)	152, 419
FspI	TGCGCA	1 cut(s)	50
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	531, 541
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	141, 434, 504
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	44, 190, 254, 263
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	5 cut(s)	126, 251, 428, 446, 473
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	5 cut(s)	4, 163, 311, 404, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 494
HpyF3I	CTNAG	2 cut(s)	317, 390
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	4 cut(s)	44, 190, 254, 263
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	340, 466
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	2 cut(s)	542, 552
LweI	GCATC	3 cut(s)	131, 343, 537
MaeI	CTAG	2 cut(s)	152, 419
MaeII	ACGT	1 cut(s)	554
MalI	GATC	2 cut(s)	342, 468
MboI	GATC	2 cut(s)	340, 466
MboII	GAAGA	1 cut(s)	449
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	3 cut(s)	44, 83, 276
MnlI	CCTC	6 cut(s)	30, 354, 360, 424, 487, 519
Mph1103I	ATGCAT	2 cut(s)	6, 313
MseI	TTAA	2 cut(s)	135, 399
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	96, 385
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	96, 385
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	57, 494
NdeII	GATC	2 cut(s)	340, 466
NlaIII	CATG	4 cut(s)	44, 190, 254, 263
NlaIV	GGNNCC	3 cut(s)	141, 194, 234
NsbI	TGCGCA	1 cut(s)	50
NsiI	ATGCAT	2 cut(s)	6, 313
NspI	RCATGY	1 cut(s)	190
PagI	TCATGA	1 cut(s)	250
PciI	ACATGT	1 cut(s)	186
PctI	GAATGC	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	532, 542
PscI	ACATGT	1 cut(s)	186
PshAI	GACNNNNGTC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	94, 383
PspGI	CCWGG	2 cut(s)	94, 383
PspN4I	GGNNCC	3 cut(s)	141, 194, 234
PspOMI	GGGCCC	1 cut(s)	139
PspPI	GGNCC	3 cut(s)	139, 140, 502
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	135, 399
SatI	GCNGC	2 cut(s)	531, 541
Sau3AI	GATC	2 cut(s)	340, 466
Sau96I	GGNCC	3 cut(s)	139, 140, 502
ScrFI	CCNGG	2 cut(s)	96, 385
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	7 cut(s)	162, 238, 270, 288, 306, 339, 557
SfaNI	GCATC	3 cut(s)	131, 343, 537
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	3 cut(s)	44, 83, 276
SsiI	CCGC	3 cut(s)	115, 212, 550
SspMI	CTAG	2 cut(s)	152, 419
StyD4I	CCNGG	2 cut(s)	94, 383
StyI	CCWWGG	2 cut(s)	196, 282
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	1 cut(s)	438
TasI	AATT	3 cut(s)	44, 83, 276
Tru1I	TTAA	2 cut(s)	135, 399
Tru9I	TTAA	2 cut(s)	135, 399
TseI	GCWGC	2 cut(s)	530, 540
TspDTI	ATGAA	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XspI	CTAG	2 cut(s)	152, 419
Zsp2I	ATGCAT	2 cut(s)	6, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.