Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Forward (+)

52847911 .. 52850605

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG397800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGTCCAAAGCTGGTGGCTACGCCGACATCAAGATCCTACGCCCCAAGGAGTACCCGGACTACGAGTCCTTCACCGTCAAATGGGGTGATCAATATGATTATGAGGTTGTGAGGAAAGTTGGGAGAGGGAAATACAGCGAGATTTGGGAATCCTCTAGTTATGAGAAATTTCGAGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

60

Amino Acids

7.14

Weight (kDa)

7.91

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	81
AhdI	GACNNNNNGTC	1 cut(s)	64
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AlwI	GGATC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	64, 98
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	33, 88
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	33, 88
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	76
BstKTI	GATC	2 cut(s)	36, 91
BstMBI	GATC	2 cut(s)	33, 88
BstSCI	CCNGG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviJI	RGCY	2 cut(s)	11, 18
CviKI_1	RGCY	2 cut(s)	11, 18
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	2 cut(s)	35, 90
DpnII	GATC	2 cut(s)	33, 88
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaiI	YATR	3 cut(s)	96, 102, 162
FbaI	TGATCA	1 cut(s)	88
FspBI	CTAG	1 cut(s)	156
HapII	CCGG	1 cut(s)	56
HinfI	GANTC	2 cut(s)	65, 149
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	64, 98
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	33, 88
LpnPI	CCDG	1 cut(s)	69
MaeI	CTAG	1 cut(s)	156
MalI	GATC	2 cut(s)	35, 90
MboI	GATC	2 cut(s)	33, 88
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	97, 105, 119, 163, 167
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	56
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	33, 88
PfeI	GAWTC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
Sau3AI	GATC	2 cut(s)	33, 88
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	56
SetI	ASST	2 cut(s)	13, 108
SgeI	CNNG	8 cut(s)	24, 43, 58, 67, 68, 76, 151, 168
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	172
TasI	AATT	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.