Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Reverse (-)

48284364 .. 48297588

Gene Structure 13225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG287100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCCAAAGCTGGTGGCTACGCCGACATCAAGATCCTACGCCCCAAGGAGTACCCGGACTACGAGTCCTTCACCGTCAAATGGGGTGATCAATATGATTATGAGGTTGTGAGGAAAGTTGGGAGAGGGAAATACAGCGAGGTCTTTGAAGGTGGAGACAATGGCATTGGTTACCCATCAAATGTAGGGTTCGTTTGTGACATATCTGTCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGTGAGTCAAGCCATAACCACCCGGCGCAATAGGCTGCAAACACCTGCCTCAGGGGCACTTAGGTTAAAGCTCAAAGAGAATGCGGGGGCGAAACGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

115

Amino Acids

12.82

Weight (kDa)

7.77

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	298
AasI	GACNNNNNNGTC	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	298
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	81, 296
AgsI	TTSAA	2 cut(s)	149, 245
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	11, 316
AluI	AGCT	2 cut(s)	11, 316
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	273
AsuC2I	CCSGG	2 cut(s)	56, 268
AsuHPI	GGTGA	2 cut(s)	64, 98
AxyI	CCTNAGG	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	212
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	56, 268
BcoDI	GTCTC	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	298
BglI	GCCNNNNNGGC	1 cut(s)	299
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	3 cut(s)	56, 212, 268
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	56, 212, 268
BpuMI	CCSGG	2 cut(s)	56, 268
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 296
Bse21I	CCTNAGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	81, 296
BseMII	CTCAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	56, 268
BslI	CCNNNNNNNGG	2 cut(s)	81, 296
BsmAI	GTCTC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	33, 88
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	308
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	33, 88
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	295, 305
BstEII	GGTNACC	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	36, 91
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	33, 88
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 299
BstNI	CCWGG	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	54, 210, 266
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	7 cut(s)	11, 18, 215, 257, 280, 316, 343
CviKI_1	RGCY	7 cut(s)	11, 18, 215, 257, 280, 316, 343
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	295, 305
DpnI	GATC	2 cut(s)	35, 90
DpnII	GATC	2 cut(s)	33, 88
DrdI	GACNNNNNNGTC	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	226
FaiI	YATR	5 cut(s)	96, 102, 203, 224, 260
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	281
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	56, 268
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	65, 250
HpaII	CCGG	2 cut(s)	56, 268
HphI	GGTGA	2 cut(s)	64, 98
Hpy188III	TCNNGA	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	79, 143
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 299
HpyF3I	CTNAG	2 cut(s)	295, 305
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	33, 88
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	69, 197, 224, 281, 282, 303
Lsp1109I	GCAGC	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	170, 197
MalI	GATC	2 cut(s)	35, 90
MboI	GATC	2 cut(s)	33, 88
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	304
MlyI	GAGTC	2 cut(s)	74, 259
MnlI	CCTC	5 cut(s)	97, 105, 119, 133, 304
MseI	TTAA	1 cut(s)	311
MspI	CCGG	2 cut(s)	56, 268
MspR9I	CCNGG	3 cut(s)	56, 212, 268
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	277, 299
NciI	CCSGG	2 cut(s)	56, 268
NdeII	GATC	2 cut(s)	33, 88
NlaIII	CATG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	197
PaqCI	CACCTGC	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	215
PctI	GAATGC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	2 cut(s)	73, 258
PpsI	GAGTC	2 cut(s)	73, 258
Psp6I	CCWGG	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	2 cut(s)	33, 88
SchI	GAGTC	2 cut(s)	74, 259
ScrFI	CCNGG	3 cut(s)	56, 212, 268
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	7 cut(s)	13, 108, 144, 154, 292, 311, 318
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	54, 210, 266
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.