Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Reverse (-)

45560804 .. 45561604

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025400

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAGAAGAAGACGATTAAGAGGGAGATTAAGGTTCTGCAATACCTTTATGGGGGCCCGAATGTGGTCAAGCTTCTTGATATTGTTCGAGATCAGCACTCGGAAACTCCGAGTTTGGTTTTCGAGTATGTTAATAGTATAGATTTCAAAATTCTATACCCGACACTGACTGACTATGACATTCACTACTACATATATGAGCTCCTCAAGGCATTGGACTACTGCCATTCACAAGGAATAATGCATAGAGATGTGAAGCCTAACAATGTTATGATAGACCATGATTTACGAAAACTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCTGGCAAGGAGTATAATGTCCGAGTGGCATCAAGATACTTTAAAGGTCCGGAACTTCTAGTTGATCTACAAGATTACGACTATTCCTTGGACATATGGAGCCTCGGTTGTATGTTTACTGGAATGATATTTCACAAGGAGCCATTCTTTTATGGTCACGACAACCATGATCAGCTGGTTAAAATTGCCAAGGTACTTGGGGCTGATGAGTTGAATGCATATGTGAACAAATATCATTTAGAGCTTGATCCTCAACTGGATGCGCTGGTTGGGAGGCACAGCAGGAAGCCGTGGTCGAATTTTATTAATGCAAACAATCAGCATCTAGTTTCTCTAGAGGCCATTGATTTTCTGGATAAACTCCTTCGGTTTGATCATCAAGACAGGCTAACTGCAAAAGAAGCCATGGGCCATCCATATTTCTCCCACGTGAGGGCAGCAGAAAGCAGCAGGATGCGGACACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

267

Amino Acids

31.35

Weight (kDa)

6.56

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 252	1e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 168	1.1e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	1 cut(s)	790
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	3 cut(s)	150, 323, 631
AcvI	CACGTG	1 cut(s)	763
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	4 cut(s)	52, 64, 765, 766
AgsI	TTSAA	2 cut(s)	148, 547
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	73, 202, 508, 577
AluI	AGCT	4 cut(s)	73, 202, 508, 577
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	3 cut(s)	55, 672, 742
ApaI	GGGCCC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	770, 780
ApoI	RAATTY	3 cut(s)	150, 323, 631
AseI	ATTAAT	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	4 cut(s)	55, 56, 380, 742
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	59
BanII	GRGCYC	2 cut(s)	59, 204
BbrPI	CACGTG	1 cut(s)	763
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	782, 792
BccI	CCATC	2 cut(s)	339, 753
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	2 cut(s)	502, 706
BfaI	CTAG	3 cut(s)	392, 659, 668
BisI	GCNGC	2 cut(s)	771, 781
BlsI	GCNGC	2 cut(s)	772, 782
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	4 cut(s)	55, 56, 380, 742
BmiI	GGNNCC	4 cut(s)	56, 57, 434, 474
BmrFI	CCNGG	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	4 cut(s)	371, 583, 664, 777
BmuI	ACTGGG	1 cut(s)	319
BoxI	GACNNNNGTC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	763
BsaJI	CCNNGG	5 cut(s)	420, 436, 522, 623, 738
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 64, 765, 766
Bse1I	ACTGG	3 cut(s)	314, 457, 594
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	5 cut(s)	420, 436, 522, 623, 738
BseGI	GGATG	4 cut(s)	331, 598, 745, 792
BseLI	CCNNNNNNNGG	4 cut(s)	52, 64, 765, 766
BseNI	ACTGG	3 cut(s)	314, 457, 594
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	782, 792
BshFI	GGCC	3 cut(s)	57, 674, 744
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	4 cut(s)	52, 64, 765, 766
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	3 cut(s)	57, 674, 744
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	59, 204
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	5 cut(s)	91, 397, 502, 580, 706
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	1 cut(s)	790
BspANI	GGCC	3 cut(s)	57, 674, 744
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	4 cut(s)	56, 57, 434, 474
BspPI	GGATC	1 cut(s)	575
BsrI	ACTGG	3 cut(s)	314, 457, 594
BssECI	CCNNGG	5 cut(s)	420, 436, 522, 623, 738
BssMI	GATC	5 cut(s)	91, 397, 502, 580, 706
BssT1I	CCWWGG	3 cut(s)	420, 522, 738
Bst2UI	CCWGG	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	763
BstDSI	CCRYGG	2 cut(s)	623, 738
BstF5I	GGATG	4 cut(s)	331, 598, 745, 792
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	5 cut(s)	94, 400, 505, 583, 709
BstMBI	GATC	5 cut(s)	91, 397, 502, 580, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	734
BstNI	CCWGG	1 cut(s)	336
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	782, 792
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	57, 674, 744
BtgI	CCRYGG	2 cut(s)	623, 738
BtsCI	GGATG	4 cut(s)	331, 598, 745, 792
BtsIMutI	CAGTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	4 cut(s)	55, 56, 380, 742
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	3 cut(s)	281, 500, 739
CviQI	GTAC	1 cut(s)	527
DpnI	GATC	5 cut(s)	93, 399, 504, 582, 708
DpnII	GATC	5 cut(s)	91, 397, 502, 580, 706
DraI	TTTAAA	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	3 cut(s)	420, 522, 738
Eco24I	GRGCYC	2 cut(s)	59, 204
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	202
Eco72I	CACGTG	1 cut(s)	763
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	3 cut(s)	420, 522, 738
EcoT22I	ATGCAT	2 cut(s)	246, 553
EcoT38I	GRGCYC	2 cut(s)	59, 204
ErhI	CCWWGG	3 cut(s)	420, 522, 738
FaeI	CATG	3 cut(s)	284, 503, 742
FatI	CATG	3 cut(s)	280, 499, 738
FauNDI	CATATG	2 cut(s)	428, 553
FbaI	TGATCA	2 cut(s)	502, 706
Fnu4HI	GCNGC	2 cut(s)	771, 781
FokI	GGATG	3 cut(s)	318, 605, 732
FriOI	GRGCYC	2 cut(s)	59, 204
Fsp4HI	GCNGC	2 cut(s)	771, 781
FspBI	CTAG	3 cut(s)	392, 659, 668
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	2 cut(s)	771, 781
HaeIII	GGCC	3 cut(s)	57, 674, 744
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	3 cut(s)	284, 503, 742
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	71
HpaII	CCGG	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	450, 559
Hpy188I	TCNGA	3 cut(s)	103, 111, 356
Hpy188III	TCNNGA	8 cut(s)	77, 89, 366, 383, 491, 668, 686, 713
Hpy8I	GTNNAC	2 cut(s)	450, 559
HpyAV	CCTTC	1 cut(s)	707
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	5 cut(s)	40, 244, 551, 644, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	734
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	3 cut(s)	284, 503, 742
HspAI	GCGC	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	382
Ksp22I	TGATCA	2 cut(s)	502, 706
Kzo9I	GATC	5 cut(s)	91, 397, 502, 580, 706
LmnI	GCTCC	3 cut(s)	207, 432, 472
Lsp1109I	GCAGC	2 cut(s)	782, 792
LweI	GCATC	4 cut(s)	371, 583, 664, 777
MaeI	CTAG	3 cut(s)	392, 659, 668
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	5 cut(s)	93, 399, 504, 582, 708
MboI	GATC	5 cut(s)	91, 397, 502, 580, 706
MboII	GAAGA	3 cut(s)	16, 19, 22
MhlI	GDGCHC	2 cut(s)	59, 204
MluCI	AATT	4 cut(s)	150, 323, 516, 631
MnlI	CCTC	7 cut(s)	15, 215, 446, 594, 600, 664, 759
Mph1103I	ATGCAT	2 cut(s)	246, 553
MroI	TCCGGA	1 cut(s)	382
MseI	TTAA	6 cut(s)	18, 30, 132, 375, 513, 639
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	734
NcoI	CCATGG	1 cut(s)	738
NdeI	CATATG	2 cut(s)	428, 553
NdeII	GATC	5 cut(s)	91, 397, 502, 580, 706
NlaIII	CATG	3 cut(s)	284, 503, 742
NlaIV	GGNNCC	4 cut(s)	56, 57, 434, 474
NmuCI	GTSAC	1 cut(s)	488
NsiI	ATGCAT	2 cut(s)	246, 553
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	553
PkrI	GCNGC	2 cut(s)	772, 782
PmaCI	CACGTG	1 cut(s)	763
PmlI	CACGTG	1 cut(s)	763
Ppu21I	YACGTR	1 cut(s)	763
PshAI	GACNNNNGTC	1 cut(s)	312
PshBI	ATTAAT	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	334
PspCI	CACGTG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	4 cut(s)	56, 57, 434, 474
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	4 cut(s)	55, 56, 380, 742
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	6 cut(s)	18, 30, 132, 375, 513, 639
SatI	GCNGC	2 cut(s)	771, 781
Sau3AI	GATC	5 cut(s)	91, 397, 502, 580, 706
Sau96I	GGNCC	4 cut(s)	55, 56, 380, 742
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	59, 204
SetI	ASST	9 cut(s)	36, 48, 75, 204, 382, 510, 528, 579, 765
SfaNI	GCATC	4 cut(s)	371, 583, 664, 777
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	150, 323, 516, 631
SsiI	CCGC	1 cut(s)	790
SspMI	CTAG	3 cut(s)	392, 659, 668
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	3 cut(s)	420, 522, 738
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	3 cut(s)	88, 123, 629
TasI	AATT	4 cut(s)	150, 323, 516, 631
Tru1I	TTAA	6 cut(s)	18, 30, 132, 375, 513, 639
Tru9I	TTAA	6 cut(s)	18, 30, 132, 375, 513, 639
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	2 cut(s)	770, 780
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	3 cut(s)	150, 323, 631
XbaI	TCTAGA	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XspI	CTAG	3 cut(s)	392, 659, 668
Zsp2I	ATGCAT	2 cut(s)	246, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.