Rh2AG193800

Casein kinase II subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
19189465 .. 19193461
3997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG193800.1

Sequence Viewer

Length: 1146 bp
ATGCGCACGATAACAATAGTCCACCACCACCACCAATATTACCTCGGTTTCCTGCTACTGTGCACCCTCTTCACCTGGCGTGCGCCGGTTGCGCATCTCCCTAACCTGCGCACCCCTCCTCGCCTTACAGAGCAGCAGCCCAAACCCAAGCCTACTCAGATCTCGCCTCCCAATCTCGCAGCAGCCATGTCCAAAGCTCGCGTCTACGCCGACATCAACGTCCTCCGCCCCAAGGAGTACTGGGATTACGAGTCCCTCACCGTCCAATGGGGTGATCAAGATGATTATGAGGTTGTGAGGAAAGTAGGGAGAGGGAAATACAGCGAGGTCTTTGAAGGTATCAATGTCAATACCAATGAGCGATGCATAATCAAAATCCTCAAGCCTGTGAAGAAGAAGAAGATTAAGAGGGAGATTAAGATTCTGCAGAACCTTTGTGGGGGCCCAAATGTGGTCAAGCTTCTTGATATTGTTCGAGATCAGCACTCGAAAACTCCGAGCTTGATTTTCGAGTATGTTAATAGTACAGATTTCAAAGTTCTGTACCCCACACTGACTGATTATGACATTCGCTACTACATATATGAGCTCCTCAAGGCATTGGACTACTGCCATTCACAAGGAATAATGCATAGAGATGTTAAGCCTCACAATGTTATGATAGACCATGAGTTGCGAAAACTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGCAAGGAGTATAATGTCCGTGTGGCATCAAGATACTTTAAAGGTCCTGAACTTCTAGTTGATCTGCAAGATTACGACTATTCCTTGGACATGTGGAGCCTTGGTTGTATGTTTGCTGGAATGATATTTCGCAAGGAGCCTTTCTTTTATGGTCACGACAACCATGATCAGCTGGTCAAAATTGCCAAGGTACTTGGGACTGATGAGTTGAATGCGTATCTGAACAAATATCATTTAGAGCTTGATCCTCAACTGGATGCGCTGGTTGGGAGGCACAGCAGGAAGCCATGGTCAAAGTTTATTAATGCAGACAATCAGCATCTAGTTTCACCAGAGGCCATTGATTTTCTGGATAAACTCCTTCGGTATGATCATCAAGACAGGCTAACTGCAAAAGAAGCCATGGTAATTCTACATCTTTAG

Protein Analysis

381

Amino Acids

44.76

Weight (kDa)

8.68

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 96 - 376 6.1e-61 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 98 - 295 1.1e-18 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
Acc16I TGCGCA 3 cut(s) 5, 93, 110
Acc36I ACCTGC 1 cut(s) 114
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 201
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 962
AcsI RAATTY 1 cut(s) 710
AfaI GTAC 4 cut(s) 239, 526, 545, 915
AfiI CCNNNNNNNGG 4 cut(s) 232, 267, 439, 451
AflIII ACRYGT 1 cut(s) 813
AgsI TTSAA 3 cut(s) 335, 535, 934
AjnI CCWGG 2 cut(s) 74, 721
AluBI AGCT 6 cut(s) 197, 460, 501, 589, 895, 964
AluI AGCT 6 cut(s) 197, 460, 501, 589, 895, 964
Alw21I GWGCWC 2 cut(s) 65, 591
Alw44I GTGCAC 1 cut(s) 61
AlwI GGATC 1 cut(s) 962
AoxI GGCC 2 cut(s) 442, 1059
ApaI GGGCCC 1 cut(s) 446
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 4 cut(s) 133, 136, 179, 182
ApoI RAATTY 1 cut(s) 710
ArsI GACNNNNNNTTYG 2 cut(s) 186, 218
AseI ATTAAT 1 cut(s) 1026
AspLEI GCGC 5 cut(s) 6, 85, 94, 111, 985
AspS9I GGNCC 3 cut(s) 442, 443, 767
AsuHPI GGTGA 4 cut(s) 64, 250, 284, 1044
AvaII GGWCC 1 cut(s) 767
BaeGI GKGCMC 2 cut(s) 65, 446
BanII GRGCYC 2 cut(s) 446, 591
Bbv12I GWGCWC 2 cut(s) 65, 591
BbvI GCAGC 4 cut(s) 145, 148, 191, 194
BccI CCATC 1 cut(s) 726
BciT130I CCWGG 2 cut(s) 76, 723
BclI TGATCA 3 cut(s) 274, 889, 1093
BfaI CTAG 2 cut(s) 779, 1046
BfmI CTRYAG 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 114
BglII AGATCT 1 cut(s) 159
BisI GCNGC 4 cut(s) 134, 137, 180, 183
BlsI GCNGC 4 cut(s) 135, 138, 181, 184
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 2 cut(s) 76, 723
Bme18I GGWCC 1 cut(s) 767
BmgT120I GGNCC 3 cut(s) 442, 443, 767
BmiI GGNNCC 4 cut(s) 443, 444, 821, 861
BmrFI CCNGG 2 cut(s) 76, 723
BmrI ACTGGG 2 cut(s) 250, 706
BmsI GCATC 5 cut(s) 103, 353, 758, 970, 1051
BmuI ACTGGG 2 cut(s) 250, 706
BoxI GACNNNNGTC 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 365, 578
BsaJI CCNNGG 7 cut(s) 43, 231, 807, 823, 909, 1010, 1125
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 267, 439, 451
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 3 cut(s) 245, 701, 981
BseBI CCWGG 2 cut(s) 76, 723
BseDI CCNNGG 7 cut(s) 43, 231, 807, 823, 909, 1010, 1125
BseGI GGATG 2 cut(s) 718, 985
BseLI CCNNNNNNNGG 4 cut(s) 232, 267, 439, 451
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 3 cut(s) 245, 701, 981
BseRI GAGGAG 2 cut(s) 108, 581
BseSI GKGCMC 2 cut(s) 65, 446
BseXI GCAGC 4 cut(s) 145, 148, 191, 194
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 444, 1061
BsiHKAI GWGCWC 2 cut(s) 65, 591
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 2 cut(s) 238, 934
BslI CCNNNNNNNGG 4 cut(s) 232, 267, 439, 451
BsmFI GGGAC 2 cut(s) 238, 934
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 2 cut(s) 444, 1061
Bsp120I GGGCCC 1 cut(s) 442
Bsp1286I GDGCHC 3 cut(s) 65, 446, 591
Bsp143I GATC 7 cut(s) 159, 274, 478, 784, 889, 967, 1093
Bsp19I CCATGG 2 cut(s) 1010, 1125
BspACI CCGC 1 cut(s) 226
BspANI GGCC 2 cut(s) 444, 1061
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 4 cut(s) 443, 444, 821, 861
BspMAI CTGCAG 1 cut(s) 429
BspMI ACCTGC 1 cut(s) 114
BspPI GGATC 1 cut(s) 962
BsrFI RCCGGY 1 cut(s) 85
BsrI ACTGG 3 cut(s) 245, 701, 981
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 7 cut(s) 43, 231, 807, 823, 909, 1010, 1125
BssMI GATC 7 cut(s) 159, 274, 478, 784, 889, 967, 1093
BssT1I CCWWGG 6 cut(s) 231, 807, 823, 909, 1010, 1125
Bst2UI CCWGG 2 cut(s) 76, 723
Bst4CI ACNGT 2 cut(s) 60, 262
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 81, 199
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 2 cut(s) 1010, 1125
BstF5I GGATG 2 cut(s) 718, 985
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 5 cut(s) 6, 85, 94, 111, 985
BstKTI GATC 7 cut(s) 162, 277, 481, 787, 892, 970, 1096
BstMBI GATC 7 cut(s) 159, 274, 478, 784, 889, 967, 1093
BstMWI GCNNNNNNNGC 3 cut(s) 89, 91, 1121
BstNI CCWGG 2 cut(s) 76, 723
BstNSI RCATGY 1 cut(s) 817
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 74, 721
BstSFI CTRYAG 1 cut(s) 425
BstSLI GKGCMC 2 cut(s) 65, 446
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 145, 148, 191, 194
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 2 cut(s) 444, 1061
BtgI CCRYGG 2 cut(s) 1010, 1125
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 2 cut(s) 718, 985
BtsIMutI CAGTG 1 cut(s) 551
BveI ACCTGC 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 81, 199
CfoI GCGC 5 cut(s) 6, 85, 94, 111, 985
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 3 cut(s) 442, 443, 767
CseI GACGC 1 cut(s) 190
Csp6I GTAC 4 cut(s) 238, 525, 544, 914
CviAII CATG 6 cut(s) 187, 668, 814, 887, 1011, 1126
CviQI GTAC 4 cut(s) 238, 525, 544, 914
DdeI CTNAG 1 cut(s) 156
DpnI GATC 7 cut(s) 161, 276, 480, 786, 891, 969, 1095
DpnII GATC 7 cut(s) 159, 274, 478, 784, 889, 967, 1093
DraI TTTAAA 1 cut(s) 763
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 589
Eco130I CCWWGG 6 cut(s) 231, 807, 823, 909, 1010, 1125
Eco24I GRGCYC 2 cut(s) 446, 591
Eco47I GGWCC 1 cut(s) 767
Eco53kI GAGCTC 1 cut(s) 589
EcoICRI GAGCTC 1 cut(s) 589
EcoO109I RGGNCCY 2 cut(s) 442, 767
EcoRII CCWGG 2 cut(s) 74, 721
EcoT14I CCWWGG 6 cut(s) 231, 807, 823, 909, 1010, 1125
EcoT22I ATGCAT 2 cut(s) 368, 633
EcoT38I GRGCYC 2 cut(s) 446, 591
ErhI CCWWGG 6 cut(s) 231, 807, 823, 909, 1010, 1125
FaeI CATG 6 cut(s) 190, 671, 817, 890, 1014, 1129
FaqI GGGAC 2 cut(s) 238, 934
FatI CATG 6 cut(s) 186, 667, 813, 886, 1010, 1125
FbaI TGATCA 3 cut(s) 274, 889, 1093
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 134, 137, 180, 183
FokI GGATG 2 cut(s) 705, 992
FriOI GRGCYC 2 cut(s) 446, 591
Fsp4HI GCNGC 4 cut(s) 134, 137, 180, 183
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 779, 1046
FspI TGCGCA 3 cut(s) 5, 93, 110
GlaI GCGC 5 cut(s) 5, 84, 93, 110, 984
GluI GCNGC 4 cut(s) 134, 137, 180, 183
HaeIII GGCC 2 cut(s) 444, 1061
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 190
HhaI GCGC 5 cut(s) 6, 85, 94, 111, 985
Hin1II CATG 6 cut(s) 190, 671, 817, 890, 1014, 1129
Hin6I GCGC 5 cut(s) 4, 83, 92, 109, 983
HinP1I GCGC 5 cut(s) 4, 83, 92, 109, 983
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 251, 421
HpaII CCGG 1 cut(s) 86
HphI GGTGA 4 cut(s) 64, 250, 284, 1044
Hpy166II GTNNAC 3 cut(s) 22, 63, 205
Hpy188I TCNGA 3 cut(s) 159, 498, 945
Hpy188III TCNNGA 8 cut(s) 278, 464, 476, 753, 770, 878, 1073, 1100
Hpy8I GTNNAC 3 cut(s) 22, 63, 205
HpyAV CCTTC 2 cut(s) 329, 1094
HpyCH4III ACNGT 2 cut(s) 60, 262
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 7 cut(s) 63, 366, 427, 631, 790, 1031, 1115
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 91, 1121
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 6 cut(s) 190, 671, 817, 890, 1014, 1129
HspAI GCGC 5 cut(s) 4, 83, 92, 109, 983
Ksp22I TGATCA 3 cut(s) 274, 889, 1093
Kzo9I GATC 7 cut(s) 159, 274, 478, 784, 889, 967, 1093
LmnI GCTCC 3 cut(s) 594, 819, 859
Lsp1109I GCAGC 4 cut(s) 145, 148, 191, 194
LweI GCATC 5 cut(s) 103, 353, 758, 970, 1051
MaeI CTAG 2 cut(s) 779, 1046
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 875
MalI GATC 7 cut(s) 161, 276, 480, 786, 891, 969, 1095
MboI GATC 7 cut(s) 159, 274, 478, 784, 889, 967, 1093
MboII GAAGA 5 cut(s) 61, 403, 406, 409, 412
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 3 cut(s) 65, 446, 591
MluCI AATT 3 cut(s) 710, 903, 1131
MlyI GAGTC 1 cut(s) 260
Mph1103I ATGCAT 2 cut(s) 368, 633
MseI TTAA 6 cut(s) 405, 417, 519, 642, 762, 1026
MslI CAYNNNNRTG 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 895
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 76, 723
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 2 cut(s) 76, 723
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 89, 91, 1121
NcoI CCATGG 2 cut(s) 1010, 1125
NdeII GATC 7 cut(s) 159, 274, 478, 784, 889, 967, 1093
NlaIII CATG 6 cut(s) 190, 671, 817, 890, 1014, 1129
NlaIV GGNNCC 4 cut(s) 443, 444, 821, 861
NmuCI GTSAC 1 cut(s) 875
NsbI TGCGCA 3 cut(s) 5, 93, 110
NsiI ATGCAT 2 cut(s) 368, 633
NspI RCATGY 1 cut(s) 817
PciI ACATGT 1 cut(s) 813
PcsI WCGNNNNNNNCGW 1 cut(s) 494
PctI GAATGC 1 cut(s) 940
PfeI GAWTC 1 cut(s) 421
PkrI GCNGC 4 cut(s) 135, 138, 181, 184
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 767
PscI ACATGT 1 cut(s) 813
PshAI GACNNNNGTC 1 cut(s) 699
PshBI ATTAAT 1 cut(s) 1026
Psp124BI GAGCTC 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 767
Psp6I CCWGG 2 cut(s) 74, 721
PspGI CCWGG 2 cut(s) 74, 721
PspN4I GGNNCC 4 cut(s) 443, 444, 821, 861
PspOMI GGGCCC 1 cut(s) 442
PspPI GGNCC 3 cut(s) 442, 443, 767
PspPPI RGGWCCY 1 cut(s) 767
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 895
RsaI GTAC 4 cut(s) 239, 526, 545, 915
RsaNI GTAC 4 cut(s) 238, 525, 544, 914
RseI CAYNNNNRTG 1 cut(s) 636
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 6 cut(s) 405, 417, 519, 642, 762, 1026
SatI GCNGC 4 cut(s) 134, 137, 180, 183
Sau3AI GATC 7 cut(s) 159, 274, 478, 784, 889, 967, 1093
Sau96I GGNCC 3 cut(s) 442, 443, 767
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 76, 723
SduI GDGCHC 3 cut(s) 65, 446, 591
SfaNI GCATC 5 cut(s) 103, 353, 758, 970, 1051
SfcI CTRYAG 1 cut(s) 425
SinI GGWCC 1 cut(s) 767
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 380, 593
SmoI CTYRAG 2 cut(s) 380, 593
Sse9I AATT 3 cut(s) 710, 903, 1131
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 38
SspMI CTAG 2 cut(s) 779, 1046
SstI GAGCTC 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 74, 721
StyI CCWWGG 6 cut(s) 231, 807, 823, 909, 1010, 1125
TaaI ACNGT 2 cut(s) 60, 262
TaiI ACGT 1 cut(s) 222
TaqI TCGA 3 cut(s) 475, 488, 510
TasI AATT 3 cut(s) 710, 903, 1131
TatI WGTACW 2 cut(s) 237, 524
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 6 cut(s) 405, 417, 519, 642, 762, 1026
Tru9I TTAA 6 cut(s) 405, 417, 519, 642, 762, 1026
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 875
TseI GCWGC 4 cut(s) 133, 136, 179, 182
Tsp45I GTSAC 1 cut(s) 875
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 1 cut(s) 558
VneI GTGCAC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 767
VspI ATTAAT 1 cut(s) 1026
XapI RAATTY 1 cut(s) 710
XceI RCATGY 1 cut(s) 817
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 2 cut(s) 779, 1046
ZrmI AGTACT 1 cut(s) 239
Zsp2I ATGCAT 2 cut(s) 368, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.