Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Reverse (-)

12613114 .. 12615945

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0143600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGAAGAGCACAACTTTGTTGCTGCTTGTGTTCTGGCTGGCTACGACGTCGGTTTGGGGCGAGCAGGCTGCTCAGGATGCCAAGGGAAACAGTGGATCATGGACTGAGTGGATTATGAATAAGCTATCACCGGGGCTTGGACTCAAGCAGGAGAGAGCAGCTAAGAATGTGGTGGACAAAGCTGGGGATGCAGCCTCTAAGGCCAGGGAAAAAGTGGACTCTTTTGGATCAAGATCGAAGTCCCAGGTGCATGACACAGCCAACAATGCCCATGACAATTGGGATCAGTCAATAAGAATGCCTACTGAGAGAGCTGGCAATGCTGCCCAAGAGACAATGGCAGAAGCAGTTGAAGCCGGAAAACAAAAAGTAGCCAATGCCTACAATGATGGTAAAGAGAAACTTAACAGTGCGAAAGACATTGCTTCTGATAAAGTTTATGATGCTAAGGAGGCAACGGCAAATATGTATGGGGAGGCTAAGCAGAAAATGAATTCAGCTTCGCATGTGGCATCAAATAAAGCTGATGATGCCAAAGAGGCAACGTCGAATATGTATGGGGATGTTAAGCAGAAAACGAACTCAGCTTCAAATGTGGCTTCAGATAAAGCATTTGATGCCAAGGAGGGAGCGGCCAATATGTATGGGGAAGCCAAGCAGAAAATGAGTTCAGCCTCAAATAAAGCTTCAGATAAAGCTTATGATACCAAAGAGACAACCGCTAATATGTATGGGGAAGCTAAGCAAAGAATTAATCATGCTTCAAATGTTGCATCAGATAGGGTTAATGATGCCAAAGAGACAGTGAAAGGGGCCATGGGTTGTGGAATGGACAAAGCAGCAGGTGCATATGGTGATGCAAAGAATACAATGAAAACGGCTACGAGTACTGTGTCTGACAAGGCCAATGATGCAATGGAATATGGGAGAGAGAGAGCTGCAGATGCATATGATGGAGCAAAGGAGAAAATGAACTTCGCCTTTGATAAGGCAGACAGGGTAGCAGGAGGAATCGAGCATGGAAGAGAAAAGGCAGCCAATTCCTATGATGAGGCAAAACAAAGGGTGGGTGAGACATACAGAGAAGCGAAGGATACTATATCCGAGCATACCAGGCATAACTATGAGGCTGCCAAGGAGAGGGCATCGCAGGCAACAGGTGATCTTGGGGCTAAGATGAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

396

Amino Acids

42.59

Weight (kDa)

7.69

Isoelectric Point (pI)

23.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	836
AatII	GACGTC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	836
AccBSI	CCGCTC	1 cut(s)	635
AciI	CCGC	2 cut(s)	635, 723
AclWI	GGATC	3 cut(s)	106, 238, 294
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	2 cut(s)	588, 675
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	892
AfiI	CCNNNNNNNGG	2 cut(s)	140, 1143
AgsI	TTSAA	3 cut(s)	356, 594, 768
AjnI	CCWGG	3 cut(s)	206, 246, 1115
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	4 cut(s)	329, 710, 797, 1070
AlwI	GGATC	3 cut(s)	106, 238, 294
AoxI	GGCC	4 cut(s)	204, 636, 816, 906
ApeKI	GCWGC	9 cut(s)	25, 71, 161, 194, 326, 842, 941, 1037, 1133
ApoI	RAATTY	1 cut(s)	496
AseI	ATTAAT	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	816
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	4 cut(s)	123, 869, 1085, 1175
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	9 cut(s)	12, 58, 173, 206, 313, 854, 928, 1049, 1120
BccI	CCATC	2 cut(s)	386, 950
BceAI	ACGGC	2 cut(s)	477, 897
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	3 cut(s)	208, 248, 1117
BciVI	GTATCC	1 cut(s)	1090
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	4 cut(s)	329, 710, 797, 1070
BfmI	CTRYAG	1 cut(s)	942
BfuAI	ACCTGC	1 cut(s)	836
BfuI	GTATCC	1 cut(s)	1090
BglI	GCCNNNNNGGC	2 cut(s)	203, 542
BlpI	GCTNAGC	2 cut(s)	483, 744
BmcAI	AGTACT	1 cut(s)	892
Bme1390I	CCNGG	4 cut(s)	135, 208, 248, 1117
BmgT120I	GGNCC	1 cut(s)	816
BmiI	GGNNCC	1 cut(s)	817
BmrFI	CCNGG	4 cut(s)	135, 208, 248, 1117
Bpu10I	CCTNAGC	2 cut(s)	75, 450
Bpu1102I	GCTNAGC	2 cut(s)	483, 744
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	7 cut(s)	84, 134, 207, 246, 624, 819, 1137
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 1143
Bse3DI	GCAATG	3 cut(s)	328, 423, 924
Bse8I	GATNNNNATC	1 cut(s)	235
BseBI	CCWGG	3 cut(s)	208, 248, 1117
BseDI	CCNNGG	7 cut(s)	84, 134, 207, 246, 624, 819, 1137
BseGI	GGATG	3 cut(s)	85, 196, 571
BseJI	GATNNNNATC	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	140, 1143
BseMI	GCAATG	3 cut(s)	328, 423, 924
BseMII	CTCAG	4 cut(s)	89, 99, 300, 600
BseXI	GCAGC	9 cut(s)	12, 58, 173, 206, 313, 854, 928, 1049, 1120
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	4 cut(s)	206, 638, 818, 908
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	134, 360
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	140, 1143
BsmAI	GTCTC	4 cut(s)	329, 710, 797, 1070
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	4 cut(s)	206, 638, 818, 908
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	5 cut(s)	98, 230, 236, 286, 1165
Bsp1720I	GCTNAGC	2 cut(s)	483, 744
Bsp19I	CCATGG	1 cut(s)	819
BspACI	CCGC	2 cut(s)	635, 723
BspANI	GGCC	4 cut(s)	206, 638, 818, 908
BspCNI	CTCAG	4 cut(s)	88, 100, 301, 599
BspLI	GGNNCC	1 cut(s)	817
BspMAI	CTGCAG	1 cut(s)	946
BspMI	ACCTGC	1 cut(s)	836
BspPI	GGATC	3 cut(s)	106, 238, 294
BspQI	GCTCTTC	1 cut(s)	2
BsrBI	CCGCTC	1 cut(s)	635
BsrDI	GCAATG	3 cut(s)	328, 423, 924
BssECI	CCNNGG	7 cut(s)	84, 134, 207, 246, 624, 819, 1137
BssMI	GATC	5 cut(s)	98, 230, 236, 286, 1165
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	4 cut(s)	84, 624, 819, 1137
Bst2UI	CCWGG	3 cut(s)	208, 248, 1117
Bst4CI	ACNGT	4 cut(s)	95, 413, 808, 895
Bst6I	CTCTTC	2 cut(s)	2, 1021
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	2 cut(s)	620, 848
BstC8I	GCNNGC	5 cut(s)	42, 65, 69, 319, 1155
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	3 cut(s)	85, 196, 571
BstKTI	GATC	5 cut(s)	101, 233, 239, 289, 1168
BstMAI	GTCTC	4 cut(s)	329, 710, 797, 1070
BstMBI	GATC	5 cut(s)	98, 230, 236, 286, 1165
BstNI	CCWGG	3 cut(s)	208, 248, 1117
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	4 cut(s)	133, 206, 246, 1115
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	9 cut(s)	12, 58, 173, 206, 313, 854, 928, 1049, 1120
BsuI	GTATCC	1 cut(s)	1090
BsuRI	GGCC	4 cut(s)	206, 638, 818, 908
BtgI	CCRYGG	1 cut(s)	819
BtgZI	GCGATG	1 cut(s)	1134
BtsCI	GGATG	3 cut(s)	85, 196, 571
BtsIMutI	CAGTG	3 cut(s)	100, 418, 813
BveI	ACCTGC	1 cut(s)	836
Cac8I	GCNNGC	5 cut(s)	42, 65, 69, 319, 1155
Cfr13I	GGNCC	1 cut(s)	816
Csp6I	GTAC	1 cut(s)	891
CviAII	CATG	7 cut(s)	102, 254, 275, 509, 761, 820, 1022
CviQI	GTAC	1 cut(s)	891
DpnI	GATC	5 cut(s)	100, 232, 238, 288, 1167
DpnII	GATC	5 cut(s)	98, 230, 236, 286, 1165
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	2 cut(s)	2, 1021
EarI	CTCTTC	2 cut(s)	2, 1021
Eco130I	CCWWGG	4 cut(s)	84, 624, 819, 1137
Eco57I	CTGAAG	2 cut(s)	588, 675
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	206, 246, 1115
EcoT14I	CCWWGG	4 cut(s)	84, 624, 819, 1137
EcoT22I	ATGCAT	1 cut(s)	952
ErhI	CCWWGG	4 cut(s)	84, 624, 819, 1137
FaeI	CATG	7 cut(s)	105, 257, 278, 512, 764, 823, 1025
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	7 cut(s)	101, 253, 274, 508, 760, 819, 1021
FauNDI	CATATG	2 cut(s)	853, 952
FokI	GGATG	3 cut(s)	92, 203, 578
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	206, 638, 818, 908
HapII	CCGG	2 cut(s)	134, 360
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	7 cut(s)	105, 257, 278, 512, 764, 823, 1025
HindIII	AAGCTT	2 cut(s)	687, 699
HinfI	GANTC	3 cut(s)	144, 221, 1014
HpaII	CCGG	2 cut(s)	134, 360
HphI	GGTGA	4 cut(s)	123, 869, 1085, 1175
Hpy166II	GTNNAC	2 cut(s)	178, 220
Hpy188I	TCNGA	6 cut(s)	433, 607, 694, 781, 901, 1108
Hpy188III	TCNNGA	2 cut(s)	77, 234
Hpy8I	GTNNAC	2 cut(s)	178, 220
Hpy99I	CGWCG	3 cut(s)	52, 55, 553
HpyAV	CCTTC	1 cut(s)	1087
HpyCH4III	ACNGT	4 cut(s)	95, 413, 808, 895
HpyCH4IV	ACGT	2 cut(s)	50, 548
HpyCH4V	TGCA	8 cut(s)	194, 253, 776, 851, 863, 917, 944, 950
HpySE526I	ACGT	2 cut(s)	50, 548
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	7 cut(s)	105, 257, 278, 512, 764, 823, 1025
Kzo9I	GATC	5 cut(s)	98, 230, 236, 286, 1165
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	2 cut(s)	632, 959
Lsp1109I	GCAGC	9 cut(s)	12, 58, 173, 206, 313, 854, 928, 1049, 1120
MaeII	ACGT	2 cut(s)	50, 548
MalI	GATC	5 cut(s)	100, 232, 238, 288, 1167
MbiI	CCGCTC	1 cut(s)	635
MboI	GATC	5 cut(s)	98, 230, 236, 286, 1165
MboII	GAAGA	2 cut(s)	19, 1038
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	5 cut(s)	280, 496, 753, 1042, 1186
MlyI	GAGTC	2 cut(s)	138, 215
Mph1103I	ATGCAT	1 cut(s)	952
MseI	TTAA	4 cut(s)	408, 570, 756, 789
MslI	CAYNNNNRTG	1 cut(s)	1125
MspI	CCGG	2 cut(s)	134, 360
MspR9I	CCNGG	4 cut(s)	135, 208, 248, 1117
MunI	CAATTG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	3 cut(s)	208, 248, 1117
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	819
NdeI	CATATG	2 cut(s)	853, 952
NdeII	GATC	5 cut(s)	98, 230, 236, 286, 1165
NlaIII	CATG	7 cut(s)	105, 257, 278, 512, 764, 823, 1025
NlaIV	GGNNCC	1 cut(s)	817
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	836
PciSI	GCTCTTC	1 cut(s)	2
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	1014
PleI	GAGTC	2 cut(s)	138, 215
PpsI	GAGTC	2 cut(s)	138, 215
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	3 cut(s)	206, 246, 1115
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	3 cut(s)	206, 246, 1115
PspN4I	GGNNCC	1 cut(s)	817
PspPI	GGNCC	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	946
RsaI	GTAC	1 cut(s)	892
RsaNI	GTAC	1 cut(s)	891
RseI	CAYNNNNRTG	1 cut(s)	1125
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	4 cut(s)	408, 570, 756, 789
Sau3AI	GATC	5 cut(s)	98, 230, 236, 286, 1165
Sau96I	GGNCC	1 cut(s)	816
ScaI	AGTACT	1 cut(s)	892
SchI	GAGTC	2 cut(s)	138, 215
ScrFI	CCNGG	4 cut(s)	135, 208, 248, 1117
SduI	GDGCHC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	942
SmiMI	CAYNNNNRTG	1 cut(s)	1125
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	5 cut(s)	280, 496, 753, 1042, 1186
SsiI	CCGC	2 cut(s)	635, 723
StyD4I	CCNGG	4 cut(s)	133, 206, 246, 1115
StyI	CCWWGG	4 cut(s)	84, 624, 819, 1137
TaaI	ACNGT	4 cut(s)	95, 413, 808, 895
TaiI	ACGT	2 cut(s)	53, 551
TaqI	TCGA	3 cut(s)	239, 551, 1017
TasI	AATT	5 cut(s)	280, 496, 753, 1042, 1186
TatI	WGTACW	1 cut(s)	890
TauI	GCSGC	1 cut(s)	638
TfiI	GAWTC	1 cut(s)	1014
Tru1I	TTAA	4 cut(s)	408, 570, 756, 789
Tru9I	TTAA	4 cut(s)	408, 570, 756, 789
TscAI	CASTG	3 cut(s)	100, 418, 813
TseI	GCWGC	9 cut(s)	25, 71, 161, 194, 326, 842, 941, 1037, 1133
TspDTI	ATGAA	4 cut(s)	134, 509, 890, 989
TspRI	CASTG	3 cut(s)	100, 418, 813
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 916
ZraI	GACGTC	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	892
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.