Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Reverse (-)

26407 .. 27114

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgagaggtgtagggaaatatttctccacgttgatcggtttcctgctactgtgcatcctcgtcgctttccgtgcttcggttgcgcacctccctaacctacacacccctccccttatagagcagcccaagcccacccagatctggcctcccaatctcgcagccatgtctatagctcgggtctacgccgacatcaacgtccttcgccccaaggagtactgggactacgagtccctcatcgtccaatggggtgatcaaaatgattatgaggttgtgagaaaagtaggaagagggatatacagcgaggtctttgaaggaattaatgtcaatactaatgagcgctgcataatcaaaatcctcaagcctgtgaagaagaagacgattaagagggagattaagattctgcagaacctttatgggggcccaaatgtagtcaagtttcttgatattgttcgagatcagcactcggaaactctgagtttggttttcgagtatgttaatagtacagatttcaaagttctgtacccgagactgactgattacgacattcgctactacatatatgagctactcagggcattggactactgccattcacaaggagtaatgcatagagatgttaagcctaacaacgttatgatagactatgagttgcgaaaacttcgcttgatagattggggtcttgccgaattttaccatcctggccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

235

Amino Acids

27.51

Weight (kDa)

8.8

Isoelectric Point (pI)

25.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
Acc16I	TGCGCA	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	180
AclI	AACGTT	1 cut(s)	630
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	686
AfaI	GTAC	3 cut(s)	215, 502, 521
AfeI	AGCGCT	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	76, 141, 415
AgsI	TTSAA	2 cut(s)	311, 511
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	2 cut(s)	173, 565
AluI	AGCT	2 cut(s)	173, 565
Alw26I	GTCTC	1 cut(s)	520
Ama87I	CYCGRG	2 cut(s)	174, 523
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	3 cut(s)	143, 418, 700
ApaI	GGGCCC	1 cut(s)	422
ApeKI	GCWGC	3 cut(s)	121, 158, 339
ApoI	RAATTY	1 cut(s)	686
AseI	ATTAAT	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	85, 339
AspS9I	GGNCC	2 cut(s)	418, 419
AsuHPI	GGTGA	1 cut(s)	260
AvaI	CYCGRG	2 cut(s)	174, 523
BaeGI	GKGCMC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	702
BanII	GRGCYC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	133, 170, 326
BccI	CCATC	1 cut(s)	702
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	699
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	520
BfmI	CTRYAG	2 cut(s)	168, 401
BfoI	RGCGCY	1 cut(s)	340
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	3 cut(s)	122, 159, 340
BlsI	GCNGC	3 cut(s)	123, 160, 341
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	699
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmeT110I	CYCGRG	2 cut(s)	174, 523
BmgT120I	GGNCC	2 cut(s)	418, 419
BmiI	GGNNCC	2 cut(s)	419, 420
BmrFI	CCNGG	1 cut(s)	699
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 141, 415
Bse1I	ACTGG	2 cut(s)	221, 703
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	54, 694
BseLI	CCNNNNNNNGG	3 cut(s)	76, 141, 415
BseMII	CTCAG	2 cut(s)	464, 583
BseNI	ACTGG	2 cut(s)	221, 703
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	3 cut(s)	133, 170, 326
BshFI	GGCC	3 cut(s)	145, 420, 702
BsiHKCI	CYCGRG	2 cut(s)	174, 523
BslFI	GGGAC	2 cut(s)	214, 233
BslI	CCNNNNNNNGG	3 cut(s)	76, 141, 415
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	2 cut(s)	214, 233
BsnI	GGCC	3 cut(s)	145, 420, 702
BsoBI	CYCGRG	2 cut(s)	174, 523
Bsp120I	GGGCCC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	4 cut(s)	33, 138, 250, 454
BspANI	GGCC	3 cut(s)	145, 420, 702
BspCNI	CTCAG	2 cut(s)	465, 582
BspLI	GGNNCC	2 cut(s)	419, 420
BspMAI	CTGCAG	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	221, 703
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	4 cut(s)	33, 138, 250, 454
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	473, 569
BstF5I	GGATG	2 cut(s)	54, 694
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	2 cut(s)	85, 339
BstKTI	GATC	4 cut(s)	36, 141, 253, 457
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	4 cut(s)	33, 138, 250, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 80, 127
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	2 cut(s)	168, 401
BstSLI	GKGCMC	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	133, 170, 326
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	145, 420, 702
BtsCI	GGATG	2 cut(s)	54, 694
CfoI	GCGC	2 cut(s)	85, 339
Cfr13I	GGNCC	2 cut(s)	418, 419
Csp6I	GTAC	3 cut(s)	214, 501, 520
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	3 cut(s)	214, 501, 520
DdeI	CTNAG	2 cut(s)	473, 569
DpnI	GATC	4 cut(s)	35, 140, 252, 456
DpnII	GATC	4 cut(s)	33, 138, 250, 454
DrdI	GACNNNNNNGTC	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	280
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	422
Eco47III	AGCGCT	1 cut(s)	338
Eco88I	CYCGRG	2 cut(s)	174, 523
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	166
FaqI	GGGAC	2 cut(s)	214, 233
FatI	CATG	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	122, 159, 340
FokI	GGATG	2 cut(s)	41, 681
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	3 cut(s)	122, 159, 340
FspI	TGCGCA	1 cut(s)	84
GlaI	GCGC	2 cut(s)	84, 338
GluI	GCNGC	3 cut(s)	122, 159, 340
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	3 cut(s)	145, 420, 702
HhaI	GCGC	2 cut(s)	85, 339
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	2 cut(s)	83, 337
HinP1I	GCGC	2 cut(s)	83, 337
HinfI	GANTC	2 cut(s)	227, 397
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	466, 474
Hpy188III	TCNNGA	2 cut(s)	440, 452
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	209, 305
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	3 cut(s)	29, 195, 630
HpyCH4V	TGCA	4 cut(s)	54, 342, 403, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 80, 127
HpyF3I	CTNAG	2 cut(s)	473, 569
HpySE526I	ACGT	3 cut(s)	29, 195, 630
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	2 cut(s)	83, 337
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	33, 138, 250, 454
LpnPI	CCDG	7 cut(s)	56, 127, 149, 202, 375, 556, 684
Lsp1109I	GCAGC	3 cut(s)	133, 170, 326
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	3 cut(s)	29, 195, 630
MalI	GATC	4 cut(s)	35, 140, 252, 456
MboI	GATC	4 cut(s)	33, 138, 250, 454
MboII	GAAGA	4 cut(s)	297, 379, 382, 385
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	2 cut(s)	315, 686
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	1 cut(s)	236
Mox20I	TGGCCA	1 cut(s)	702
Mph1103I	ATGCAT	1 cut(s)	609
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	5 cut(s)	318, 381, 393, 495, 618
MslI	CAYNNNNRTG	1 cut(s)	612
Msp20I	TGGCCA	1 cut(s)	702
MspR9I	CCNGG	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	3 cut(s)	71, 80, 127
NdeII	GATC	4 cut(s)	33, 138, 250, 454
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	419, 420
NsbI	TGCGCA	1 cut(s)	84
NsiI	ATGCAT	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	123, 160, 341
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	2 cut(s)	419, 420
PspOMI	GGGCCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	418, 419
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	3 cut(s)	215, 502, 521
RsaNI	GTAC	3 cut(s)	214, 501, 520
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	5 cut(s)	318, 381, 393, 495, 618
SatI	GCNGC	3 cut(s)	122, 159, 340
Sau3AI	GATC	4 cut(s)	33, 138, 250, 454
Sau96I	GGNCC	2 cut(s)	418, 419
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	699
SduI	GDGCHC	1 cut(s)	422
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	168, 401
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	315, 686
SspI	AATATT	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	697
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	3 cut(s)	32, 198, 633
TaqI	TCGA	2 cut(s)	451, 486
TasI	AATT	2 cut(s)	315, 686
TatI	WGTACW	2 cut(s)	213, 500
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	5 cut(s)	318, 381, 393, 495, 618
Tru9I	TTAA	5 cut(s)	318, 381, 393, 495, 618
TseI	GCWGC	3 cut(s)	121, 158, 339
TspGWI	ACGGA	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.