Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Reverse (-)

18505022 .. 18508838

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG201000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCGCACGATAACAATAGTCCACCACCACCACCAATATTACCTCGGTTTCCTGCTACTGTGCACCCTCTTCACCTGGCGTGCGCCGGTTGCGCATCTCCCTAACCTGCGCACCCCTCCTCGCCTTACAGAGCAGCAGCCCAAACCCAAGCCTACTCAGATCTCGCCTCCCAATCTCGCAGCAGCCATGTCCAAAGCTCGCGTCTACGCCGACATCAACGTCCTCCGCCCCAAGGAGTACTGGGATTACGAGTCCCTCACCGTCCAATGGGGTGATCAAGATGATTATGAGGTTGTGAGGAAAGTAGGGAGAGGGAAATACAGCGAGGTCTTTGAAGGTATCAATGTCAATACCAATGAGCGATGCATAATCAAAATCCTCAAGCCTGTGAAGAAGAAGAAGATTAAGAGGGAGATTAAGATTCTGCAGAACCTTTGTGGGGGCCCAAATGTGGTCAAGCTTCTTGATATTGTTCGAGATCAGCACTCGAAAACTCCGAGCTTGATTTTCGAGTATGTTAATAGTACAGATTTCAAAGTTCTGTACCCCACACTGACTGATTATGACATTCGCTACTACATATATGAGCTCCTCAAGGCATTGGACTACTGCCATTCACAAGGAATAATGCATAGAGATGTTAAGCCTCACAATGTTATGATAGACCATGAGTTGCGAAAACTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTACCATCCAGGCAAGGAGTATAATGTCCGTGTGGCATCAAGATACTTTAAAGGTCCTGAACTTCTAGTTGATCTGCAAGATTACGACTATTCCTTGGACATGTGGAGCCTTGGTTGTATGTTTGCTGGAATGATATTTCGCAAGGAGCCTTTCTTTTATGGTCACGACAACCATGATCAGCTGGTCAAAATTGCCAAGGTACTTGGGACTGATGAGTTGAATGCGTATCTGAACAAATATCATTTAGAGCTTGATCCTCAACTGGATGCGCTGGTTGGGAGGTATGTTCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

336

Amino Acids

39.5

Weight (kDa)

8.7

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	96 - 305	8.2e-54	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	98 - 296	7.9e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc16I	TGCGCA	3 cut(s)	5, 93, 110
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	201
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	962
AcsI	RAATTY	1 cut(s)	710
AfaI	GTAC	4 cut(s)	239, 526, 545, 915
AfiI	CCNNNNNNNGG	4 cut(s)	232, 267, 439, 451
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	4 cut(s)	335, 535, 934, 1004
AjnI	CCWGG	2 cut(s)	74, 721
AluBI	AGCT	6 cut(s)	197, 460, 501, 589, 895, 964
AluI	AGCT	6 cut(s)	197, 460, 501, 589, 895, 964
Alw21I	GWGCWC	2 cut(s)	65, 591
Alw44I	GTGCAC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	962
AoxI	GGCC	1 cut(s)	442
ApaI	GGGCCC	1 cut(s)	446
ApaLI	GTGCAC	1 cut(s)	61
ApeKI	GCWGC	4 cut(s)	133, 136, 179, 182
ApoI	RAATTY	1 cut(s)	710
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AspLEI	GCGC	5 cut(s)	6, 85, 94, 111, 985
AspS9I	GGNCC	3 cut(s)	442, 443, 767
AsuHPI	GGTGA	3 cut(s)	64, 250, 284
AvaII	GGWCC	1 cut(s)	767
BaeGI	GKGCMC	2 cut(s)	65, 446
BanII	GRGCYC	2 cut(s)	446, 591
Bbv12I	GWGCWC	2 cut(s)	65, 591
BbvI	GCAGC	4 cut(s)	145, 148, 191, 194
BccI	CCATC	1 cut(s)	726
BciT130I	CCWGG	2 cut(s)	76, 723
BclI	TGATCA	2 cut(s)	274, 889
BfaI	CTAG	1 cut(s)	779
BfmI	CTRYAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	4 cut(s)	134, 137, 180, 183
BlsI	GCNGC	4 cut(s)	135, 138, 181, 184
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	2 cut(s)	76, 723
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	3 cut(s)	442, 443, 767
BmiI	GGNNCC	4 cut(s)	443, 444, 821, 861
BmrFI	CCNGG	2 cut(s)	76, 723
BmrI	ACTGGG	2 cut(s)	250, 706
BmsI	GCATC	4 cut(s)	103, 353, 758, 970
BmuI	ACTGGG	2 cut(s)	250, 706
BoxI	GACNNNNGTC	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	365, 578
BsaJI	CCNNGG	5 cut(s)	43, 231, 807, 823, 909
BsaXI	ACNNNNNCTCC	2 cut(s)	811, 841
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 267, 439, 451
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	245, 701, 981
BseBI	CCWGG	2 cut(s)	76, 723
BseDI	CCNNGG	5 cut(s)	43, 231, 807, 823, 909
BseGI	GGATG	2 cut(s)	718, 985
BseLI	CCNNNNNNNGG	4 cut(s)	232, 267, 439, 451
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	245, 701, 981
BseRI	GAGGAG	2 cut(s)	108, 581
BseSI	GKGCMC	2 cut(s)	65, 446
BseXI	GCAGC	4 cut(s)	145, 148, 191, 194
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	65, 591
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	2 cut(s)	238, 934
BslI	CCNNNNNNNGG	4 cut(s)	232, 267, 439, 451
BsmFI	GGGAC	2 cut(s)	238, 934
BsmI	GAATGC	1 cut(s)	940
BsnI	GGCC	1 cut(s)	444
Bsp120I	GGGCCC	1 cut(s)	442
Bsp1286I	GDGCHC	3 cut(s)	65, 446, 591
Bsp143I	GATC	6 cut(s)	159, 274, 478, 784, 889, 967
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	443, 444, 821, 861
BspMAI	CTGCAG	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	962
BsrFI	RCCGGY	1 cut(s)	85
BsrI	ACTGG	3 cut(s)	245, 701, 981
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	5 cut(s)	43, 231, 807, 823, 909
BssMI	GATC	6 cut(s)	159, 274, 478, 784, 889, 967
BssT1I	CCWWGG	4 cut(s)	231, 807, 823, 909
Bst2UI	CCWGG	2 cut(s)	76, 723
Bst4CI	ACNGT	2 cut(s)	60, 262
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	81, 199
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	718, 985
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	5 cut(s)	6, 85, 94, 111, 985
BstKTI	GATC	6 cut(s)	162, 277, 481, 787, 892, 970
BstMBI	GATC	6 cut(s)	159, 274, 478, 784, 889, 967
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 91
BstNI	CCWGG	2 cut(s)	76, 723
BstNSI	RCATGY	1 cut(s)	817
BstPAI	GACNNNNGTC	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	74, 721
BstSFI	CTRYAG	1 cut(s)	425
BstSLI	GKGCMC	2 cut(s)	65, 446
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	4 cut(s)	145, 148, 191, 194
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	718, 985
BtsIMutI	CAGTG	1 cut(s)	551
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	81, 199
CfoI	GCGC	5 cut(s)	6, 85, 94, 111, 985
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	442, 443, 767
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	4 cut(s)	238, 525, 544, 914
CviAII	CATG	4 cut(s)	187, 668, 814, 887
CviQI	GTAC	4 cut(s)	238, 525, 544, 914
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	6 cut(s)	161, 276, 480, 786, 891, 969
DpnII	GATC	6 cut(s)	159, 274, 478, 784, 889, 967
DraI	TTTAAA	1 cut(s)	763
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	4 cut(s)	231, 807, 823, 909
Eco24I	GRGCYC	2 cut(s)	446, 591
Eco47I	GGWCC	1 cut(s)	767
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoO109I	RGGNCCY	2 cut(s)	442, 767
EcoRII	CCWGG	2 cut(s)	74, 721
EcoT14I	CCWWGG	4 cut(s)	231, 807, 823, 909
EcoT22I	ATGCAT	2 cut(s)	368, 633
EcoT38I	GRGCYC	2 cut(s)	446, 591
ErhI	CCWWGG	4 cut(s)	231, 807, 823, 909
FaeI	CATG	4 cut(s)	190, 671, 817, 890
FaqI	GGGAC	2 cut(s)	238, 934
FatI	CATG	4 cut(s)	186, 667, 813, 886
FbaI	TGATCA	2 cut(s)	274, 889
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	134, 137, 180, 183
FokI	GGATG	2 cut(s)	705, 992
FriOI	GRGCYC	2 cut(s)	446, 591
Fsp4HI	GCNGC	4 cut(s)	134, 137, 180, 183
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	1 cut(s)	779
FspI	TGCGCA	3 cut(s)	5, 93, 110
GlaI	GCGC	5 cut(s)	5, 84, 93, 110, 984
GluI	GCNGC	4 cut(s)	134, 137, 180, 183
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	5 cut(s)	6, 85, 94, 111, 985
Hin1II	CATG	4 cut(s)	190, 671, 817, 890
Hin6I	GCGC	5 cut(s)	4, 83, 92, 109, 983
HinP1I	GCGC	5 cut(s)	4, 83, 92, 109, 983
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	251, 421
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	3 cut(s)	64, 250, 284
Hpy166II	GTNNAC	3 cut(s)	22, 63, 205
Hpy188I	TCNGA	3 cut(s)	159, 498, 945
Hpy188III	TCNNGA	6 cut(s)	278, 464, 476, 753, 770, 878
Hpy8I	GTNNAC	3 cut(s)	22, 63, 205
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	60, 262
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	5 cut(s)	63, 366, 427, 631, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 91
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	190, 671, 817, 890
HspAI	GCGC	5 cut(s)	4, 83, 92, 109, 983
Ksp22I	TGATCA	2 cut(s)	274, 889
Kzo9I	GATC	6 cut(s)	159, 274, 478, 784, 889, 967
LmnI	GCTCC	3 cut(s)	594, 819, 859
Lsp1109I	GCAGC	4 cut(s)	145, 148, 191, 194
LweI	GCATC	4 cut(s)	103, 353, 758, 970
MaeI	CTAG	1 cut(s)	779
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	875
MalI	GATC	6 cut(s)	161, 276, 480, 786, 891, 969
MboI	GATC	6 cut(s)	159, 274, 478, 784, 889, 967
MboII	GAAGA	5 cut(s)	61, 403, 406, 409, 412
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	3 cut(s)	65, 446, 591
MluCI	AATT	2 cut(s)	710, 903
MlyI	GAGTC	1 cut(s)	260
Mph1103I	ATGCAT	2 cut(s)	368, 633
MseI	TTAA	6 cut(s)	405, 417, 519, 642, 762, 1009
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	1 cut(s)	895
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	76, 723
Mva1269I	GAATGC	1 cut(s)	940
MvaI	CCWGG	2 cut(s)	76, 723
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	89, 91
NdeII	GATC	6 cut(s)	159, 274, 478, 784, 889, 967
NlaIII	CATG	4 cut(s)	190, 671, 817, 890
NlaIV	GGNNCC	4 cut(s)	443, 444, 821, 861
NmuCI	GTSAC	1 cut(s)	875
NsbI	TGCGCA	3 cut(s)	5, 93, 110
NsiI	ATGCAT	2 cut(s)	368, 633
NspI	RCATGY	1 cut(s)	817
PciI	ACATGT	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PctI	GAATGC	1 cut(s)	940
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	4 cut(s)	135, 138, 181, 184
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	767
PscI	ACATGT	1 cut(s)	813
PshAI	GACNNNNGTC	1 cut(s)	699
Psp124BI	GAGCTC	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	74, 721
PspGI	CCWGG	2 cut(s)	74, 721
PspN4I	GGNNCC	4 cut(s)	443, 444, 821, 861
PspOMI	GGGCCC	1 cut(s)	442
PspPI	GGNCC	3 cut(s)	442, 443, 767
PspPPI	RGGWCCY	1 cut(s)	767
PstI	CTGCAG	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	895
RsaI	GTAC	4 cut(s)	239, 526, 545, 915
RsaNI	GTAC	4 cut(s)	238, 525, 544, 914
RseI	CAYNNNNRTG	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	6 cut(s)	405, 417, 519, 642, 762, 1009
SatI	GCNGC	4 cut(s)	134, 137, 180, 183
Sau3AI	GATC	6 cut(s)	159, 274, 478, 784, 889, 967
Sau96I	GGNCC	3 cut(s)	442, 443, 767
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	76, 723
SduI	GDGCHC	3 cut(s)	65, 446, 591
SfaNI	GCATC	4 cut(s)	103, 353, 758, 970
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	767
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	2 cut(s)	380, 593
SmoI	CTYRAG	2 cut(s)	380, 593
Sse9I	AATT	2 cut(s)	710, 903
SsiI	CCGC	1 cut(s)	226
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	1 cut(s)	779
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	74, 721
StyI	CCWWGG	4 cut(s)	231, 807, 823, 909
TaaI	ACNGT	2 cut(s)	60, 262
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	475, 488, 510
TasI	AATT	2 cut(s)	710, 903
TatI	WGTACW	2 cut(s)	237, 524
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	6 cut(s)	405, 417, 519, 642, 762, 1009
Tru9I	TTAA	6 cut(s)	405, 417, 519, 642, 762, 1009
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	875
TseI	GCWGC	4 cut(s)	133, 136, 179, 182
Tsp45I	GTSAC	1 cut(s)	875
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	1 cut(s)	558
VneI	GTGCAC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	767
XapI	RAATTY	1 cut(s)	710
XceI	RCATGY	1 cut(s)	817
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	779
ZrmI	AGTACT	1 cut(s)	239
Zsp2I	ATGCAT	2 cut(s)	368, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.