Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Forward (+)

3425162 .. 3426211

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGAAGTGTAGGGAAGTATTGCTCCACCTTATTCCTAGGTTTCCTGCAACTGTGTCCCGTCGTCGCCGTGCGTGTGCCGGTTTCGCACCTCCCTAACCTTCCCACCCCTTCCAAGGAGTACGAGTTCCTCAACGTCCAATGGGGTGATCAACATGATTATAAAGTTGTGAAAAAAGTAGGAAATGGGGTATACAGCGAGGTTTATGAGTGCAACAATGTCTATACCAATGAGAGCTGCATAGTCAAAATGCTCAAGCCTGTGAACAAGAAGAAGATTGAGAGGGAGATTAAGATTCTGCAGAACCTTTCTGGTGGCCCGAATGTGATCAAACTTCTTGATGTTGTTCAATATCATCACTCGAAAACTCCGAGTTTGATTTTCGAGCATGTTAATAGTACAGATTTTAGAGTTTTGTACCCGACACTGACGGACCATGACATTCGCTACTACACATATGATCTCCTCAAGGCATTGGACTATGCTCATGCACAAGGAATCATGCATAGAGATATTAAACCTCAGAATGTTATGATCGACCACAAGTTGCGAAAGCTTCGATTGATAGACTGGGGTATGTCCGAGTTTTACCAACCTGGAAAGGAGTATGATGTCCGTGTGGCATCAAGATATTTTAAAGCTCCTGAGCTTCTAGTTGATTTGCGAGACTACGACTACTCGATAGATATGTGGAGCCTTGGTTGCATGTTTGCTGGGATGATATTTCGGAAGGAGCCTTTCTTTGATGGTCACGATAATAATGATCAGCTGGTTAAAATTGCCAGGGTACTTGGGACGGACGAGTTGGATGCATATCTGAATGAATATGATCTAGGGCTTGATCCTGAACTGGATGAGTTGGTTGGGAGGCACAGCAGGAAGCCATGGTCGAAGTTTATTAATGCAGACAATGAACATCTAGTTTCACCGGAAGCTATTGATTTTGTGGATAGACTCCTTCGGTTTGATCATCAAGACAGGCTAACTGCAAGAGAAGCCATGAGTCATTCGTATTTCTCCCAAGTGAGGGAAGCAGAAACCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

350

Amino Acids

40.67

Weight (kDa)

6.06

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 339	1.7e-60	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	56 - 253	1.2e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	836
AfaI	GTAC	4 cut(s)	122, 400, 419, 789
AfiI	CCNNNNNNNGG	3 cut(s)	115, 1026, 1027
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	595, 782
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	7 cut(s)	237, 556, 641, 649, 769, 935, 1047
AluI	AGCT	7 cut(s)	237, 556, 641, 649, 769, 935, 1047
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	836
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	237, 1044
AseI	ATTAAT	1 cut(s)	900
AspA2I	CCTAGG	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	317, 433
AsuHPI	GGTGA	2 cut(s)	158, 918
AvaII	GGWCC	1 cut(s)	433
AvrII	CCTAGG	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	2 cut(s)	597, 784
BclI	TGATCA	4 cut(s)	148, 327, 763, 967
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	5 cut(s)	38, 653, 833, 920, 1048
BfmI	CTRYAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	238, 1045
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	2 cut(s)	239, 1046
Bme1390I	CCNGG	2 cut(s)	597, 784
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	317, 433
BmiI	GGNNCC	2 cut(s)	695, 735
BmrFI	CCNGG	2 cut(s)	597, 784
BmrI	ACTGGG	1 cut(s)	580
BmsI	GCATC	2 cut(s)	632, 799
BmuI	ACTGGG	1 cut(s)	580
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	239, 452
BsaBI	GATNNNNATC	1 cut(s)	813
BsaJI	CCNNGG	5 cut(s)	37, 114, 697, 783, 884
BsaWI	WCCGGW	1 cut(s)	928
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 685, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 1026, 1027
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	575, 855
Bse8I	GATNNNNATC	1 cut(s)	813
BseBI	CCWGG	2 cut(s)	597, 784
BseDI	CCNNGG	5 cut(s)	37, 114, 697, 783, 884
BseGI	GGATG	3 cut(s)	723, 814, 859
BseJI	GATNNNNATC	1 cut(s)	813
BseLI	CCNNNNNNNGG	3 cut(s)	115, 1026, 1027
BseMII	CTCAG	2 cut(s)	536, 636
BseNI	ACTGG	2 cut(s)	575, 855
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	713
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	80, 929
BslFI	GGGAC	2 cut(s)	42, 808
BslI	CCNNNNNNNGG	3 cut(s)	115, 1026, 1027
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	2 cut(s)	42, 808
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	8 cut(s)	148, 327, 460, 534, 763, 829, 841, 967
Bsp19I	CCATGG	1 cut(s)	884
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	535, 637
BspLI	GGNNCC	2 cut(s)	695, 735
BspMAI	CTGCAG	1 cut(s)	303
BspPI	GGATC	1 cut(s)	836
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	575, 855
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	5 cut(s)	37, 114, 697, 783, 884
BssMI	GATC	8 cut(s)	148, 327, 460, 534, 763, 829, 841, 967
BssNAI	GTATAC	1 cut(s)	193
BssT1I	CCWWGG	4 cut(s)	37, 114, 697, 884
Bst1107I	GTATAC	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	597, 784
Bst4CI	ACNGT	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	522, 645
BstDSI	CCRYGG	1 cut(s)	884
BstF5I	GGATG	3 cut(s)	723, 814, 859
BstKTI	GATC	8 cut(s)	151, 330, 463, 537, 766, 832, 844, 970
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	8 cut(s)	148, 327, 460, 534, 763, 829, 841, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 702, 995
BstNI	CCWGG	2 cut(s)	597, 784
BstNSI	RCATGY	2 cut(s)	392, 709
BstSCI	CCNGG	2 cut(s)	595, 782
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	224
BstZ17I	GTATAC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	884
BtsCI	GGATG	3 cut(s)	723, 814, 859
BtsIMutI	CAGTG	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	317, 433
Csp6I	GTAC	4 cut(s)	121, 399, 418, 788
CviAII	CATG	8 cut(s)	155, 389, 437, 488, 502, 706, 885, 1000
CviQI	GTAC	4 cut(s)	121, 399, 418, 788
DdeI	CTNAG	2 cut(s)	522, 645
DpnI	GATC	8 cut(s)	150, 329, 462, 536, 765, 831, 843, 969
DpnII	GATC	8 cut(s)	148, 327, 460, 534, 763, 829, 841, 967
DraI	TTTAAA	1 cut(s)	637
Eco130I	CCWWGG	4 cut(s)	37, 114, 697, 884
Eco47I	GGWCC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	595, 782
EcoT14I	CCWWGG	4 cut(s)	37, 114, 697, 884
EcoT22I	ATGCAT	2 cut(s)	507, 814
ErhI	CCWWGG	4 cut(s)	37, 114, 697, 884
FaeI	CATG	8 cut(s)	158, 392, 440, 491, 505, 709, 888, 1003
FaqI	GGGAC	2 cut(s)	42, 808
FatI	CATG	8 cut(s)	154, 388, 436, 487, 501, 705, 884, 999
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	4 cut(s)	148, 327, 763, 967
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	238, 1045
FokI	GGATG	3 cut(s)	730, 821, 866
Fsp4HI	GCNGC	2 cut(s)	238, 1045
FspBI	CTAG	5 cut(s)	38, 653, 833, 920, 1048
GluI	GCNGC	2 cut(s)	238, 1045
GsaI	CCCAGC	1 cut(s)	717
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	2 cut(s)	80, 929
Hin1II	CATG	8 cut(s)	158, 392, 440, 491, 505, 709, 888, 1003
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	4 cut(s)	295, 498, 954, 1003
HpaII	CCGG	2 cut(s)	80, 929
HphI	GGTGA	2 cut(s)	158, 918
Hpy166II	GTNNAC	2 cut(s)	193, 265
Hpy188I	TCNGA	5 cut(s)	372, 525, 583, 729, 819
Hpy188III	TCNNGA	6 cut(s)	338, 627, 644, 752, 845, 974
Hpy8I	GTNNAC	2 cut(s)	193, 265
Hpy99I	CGWCG	2 cut(s)	65, 68
HpyAV	CCTTC	4 cut(s)	110, 120, 724, 968
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 702, 995
HpyF3I	CTNAG	2 cut(s)	522, 645
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	8 cut(s)	158, 392, 440, 491, 505, 709, 888, 1003
Ksp22I	TGATCA	4 cut(s)	148, 327, 763, 967
Kzo9I	GATC	8 cut(s)	148, 327, 460, 534, 763, 829, 841, 967
LmnI	GCTCC	4 cut(s)	29, 646, 693, 733
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	2 cut(s)	632, 799
MaeI	CTAG	5 cut(s)	38, 653, 833, 920, 1048
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	8 cut(s)	150, 329, 462, 536, 765, 831, 843, 969
MboI	GATC	8 cut(s)	148, 327, 460, 534, 763, 829, 841, 967
MboII	GAAGA	2 cut(s)	283, 286
MluCI	AATT	1 cut(s)	777
MlyI	GAGTC	2 cut(s)	948, 1012
MmeI	TCCRAC	1 cut(s)	786
MnlI	CCTC	8 cut(s)	101, 140, 193, 276, 476, 531, 861, 1020
Mph1103I	ATGCAT	2 cut(s)	507, 814
MseI	TTAA	6 cut(s)	291, 393, 516, 636, 774, 900
MspA1I	CMGCKG	1 cut(s)	769
MspI	CCGG	2 cut(s)	80, 929
MspR9I	CCNGG	2 cut(s)	597, 784
MvaI	CCWGG	2 cut(s)	597, 784
MwoI	GCNNNNNNNGC	3 cut(s)	85, 702, 995
NcoI	CCATGG	1 cut(s)	884
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	8 cut(s)	148, 327, 460, 534, 763, 829, 841, 967
NlaIII	CATG	8 cut(s)	158, 392, 440, 491, 505, 709, 888, 1003
NlaIV	GGNNCC	2 cut(s)	695, 735
NmuCI	GTSAC	1 cut(s)	749
NsiI	ATGCAT	2 cut(s)	507, 814
NspI	RCATGY	2 cut(s)	392, 709
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	295, 498
PkrI	GCNGC	2 cut(s)	239, 1046
PleI	GAGTC	2 cut(s)	948, 1011
PpsI	GAGTC	2 cut(s)	948, 1011
PshBI	ATTAAT	1 cut(s)	900
PsiI	TTATAA	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	595, 782
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	2 cut(s)	595, 782
PspN4I	GGNNCC	2 cut(s)	695, 735
PspPI	GGNCC	2 cut(s)	317, 433
PstI	CTGCAG	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	769
RsaI	GTAC	4 cut(s)	122, 400, 419, 789
RsaNI	GTAC	4 cut(s)	121, 399, 418, 788
SaqAI	TTAA	6 cut(s)	291, 393, 516, 636, 774, 900
SatI	GCNGC	2 cut(s)	238, 1045
Sau3AI	GATC	8 cut(s)	148, 327, 460, 534, 763, 829, 841, 967
Sau96I	GGNCC	2 cut(s)	317, 433
SchI	GAGTC	2 cut(s)	948, 1012
ScrFI	CCNGG	2 cut(s)	597, 784
SfaNI	GCATC	2 cut(s)	632, 799
SfcI	CTRYAG	1 cut(s)	299
SinI	GGWCC	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	254, 467
SmoI	CTYRAG	2 cut(s)	254, 467
Sse9I	AATT	1 cut(s)	777
SspMI	CTAG	5 cut(s)	38, 653, 833, 920, 1048
StyD4I	CCNGG	2 cut(s)	595, 782
StyI	CCWWGG	4 cut(s)	37, 114, 697, 884
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	6 cut(s)	362, 384, 537, 559, 680, 890
TasI	AATT	1 cut(s)	777
TatI	WGTACW	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	295, 498
Tru1I	TTAA	6 cut(s)	291, 393, 516, 636, 774, 900
Tru9I	TTAA	6 cut(s)	291, 393, 516, 636, 774, 900
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	2 cut(s)	237, 1044
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	2 cut(s)	837, 927
TspGWI	ACGGA	3 cut(s)	446, 605, 812
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	433
VspI	ATTAAT	1 cut(s)	900
XceI	RCATGY	2 cut(s)	392, 709
XmaJI	CCTAGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	5 cut(s)	38, 653, 833, 920, 1048
Zsp2I	ATGCAT	2 cut(s)	507, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.