Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003499

Physical Location & Seq

Genomic Coordinates Reverse (-)

4931557 .. 4932262

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCCAAAGCTGGTGTCTACGCCGACATCAAGATCCTCCGCCCCAAGGATGATCAATATGATTATGAGGTTGTGAGGAAAGTTGGGAGAGGGAAATACAGCGAGGTCTTTGAAGTACTAATCTCAATACCAATAGCAATACATAACCAAAAGCTGCAAGTTGGAAGGGTGAGGTGGAAGGAAAGAGTAATGATGGTGGGGTTGAGAGTATGCGATGCTGTAGAAGCTCATGACAGATTTGTGAATCCTCTAGTTATGAGAAATTTTGAGGATAAGAAAAGGGGAAATGGGTTTTCAAGTTCTTCTCCTATGGTATTTTGGGTTTGTTTGAACTTTTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

115

Amino Acids

13.26

Weight (kDa)

9.44

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23080 AT2G23080
fragaria_vesca	FvH4_1g17250 FvH4_1g17250 FvH4_6g05990
malus_domestica	MD02G1182400.v1.1 MD15G1293600.v1.1
prunus_persica	Prupe.6G223900_v2.0.a1
pyrus_communis	pycom15g25650
rosa_chinensis	RchiOBHm_Chr2g0107441 RchiOBHm_Chr4g0408851 RchiOBHm_Chr5g0055571 RchiOBHm_Chr6g0286251
rosa_laevigata	RLG00000017579 RLG00000022601 RLG00000025400
rosa_multiflora	Rmu_co8110362.1_g000001 Rmu_sc0002169.1_g000006 Rmu_sc0025013.1_g000003
rosa_roxburghii	Rroxscaffold_2G00136340 Rroxscaffold_4G00301400
rosa_rugosa	Rorug02G0143600 Rorug02G0143600
rosa_samantha	Rh2AG193800 Rh2BG206000 Rh2CG199000 Rh2DG125100 Rh2DG201000 Rh5CG397800 Rh6BG117600 Rh6CG295200 Rh6DG104300 Rh6DG287100
rosa_wichuraiana	Rw2G015350 Rw3G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	113, 297, 331
AluBI	AGCT	3 cut(s)	11, 154, 227
AluI	AGCT	3 cut(s)	11, 154, 227
AlwI	GGATC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	262
ArsI	GACNNNNNNTTYG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	52
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
BmcAI	AGTACT	1 cut(s)	117
BmsI	GCATC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	33, 52
BspACI	CCGC	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	229
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	33, 52
BssT1I	CCWWGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	36, 55
BstMBI	GATC	2 cut(s)	33, 52
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	55
CciI	TCATGA	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	3 cut(s)	11, 154, 227
CviKI_1	RGCY	3 cut(s)	11, 154, 227
CviQI	GTAC	1 cut(s)	116
DpnI	GATC	2 cut(s)	35, 54
DpnII	GATC	2 cut(s)	33, 52
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	233
FaiI	YATR	7 cut(s)	60, 66, 144, 211, 231, 257, 311
FatI	CATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	1 cut(s)	244
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	2 cut(s)	31, 230
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	159, 172
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	33, 52
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	251
MalI	GATC	2 cut(s)	35, 54
MboI	GATC	2 cut(s)	33, 52
MboII	GAAGA	1 cut(s)	294
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	8 cut(s)	47, 61, 69, 83, 97, 165, 258, 262
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	2 cut(s)	33, 52
NlaIII	CATG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	2 cut(s)	33, 52
ScaI	AGTACT	1 cut(s)	117
SetI	ASST	6 cut(s)	13, 72, 108, 156, 176, 229
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	219
SgeI	CNNG	8 cut(s)	24, 43, 58, 115, 170, 242, 263, 309
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	45
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.