Prupe.6G223900_v2.0.a1

Casein kinase II subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
22891625 .. 22896755
5131 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G223900.1

Sequence Viewer

Length: 1206 bp
ATGCTACAGCACATGATATATGCGCACAATCCAGCAATACCTCTTCGCTTCCTGCTAGTGTGCACCCTTGTTGCCTTGCGTGCGCCTGTCGCGCACCCTCCTATCGTGCGCACCCCCTCCCCCTGCCCTCCTCACGAGACACAGTCTCCCCCTACCGCCAAAGCCACTCATCAGATCTCGGCTTCTGATAATCTCGGAGGAGCAGCCATGTCCAAAGCTCGTGTCTACGCTGACGTCAATGTCATCCGCCCTAAAGAGTACTGGGACTACGAGTCCCTCACCGTTCAATGGGGTGATCAAGATGATTATGAAGTTGTACGGAAAGTAGGAAGGGGAAAATACAGCGAGGTCTTCGAAGGCATAAATGTCAATACGAATGAGCGCTGCATAATCAAGATCCTCAAGCCTGTTAAGAAGAAGAAGATTAAGAGAGAGATAAAAATTCTCCAGAACCTTTGTGGGGGACCGAATGTCGTCAAGCTTCTTGACATTGTCCGAGATCAGCACTCAAAAACTCCAAGCTTGATATTTGAGTTTGTGAACAGTACTGATTTCAAAGTTTTGTACCCCACACTGACTGATTATGACATACGCTACTACATATATGAGCTTCTCAAGGCATTAGATTACTGCCATTCACAAGGAATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGACCATGAATTGCGAAAACTTCGCTTGATAGACTGGGGACTTGCTGAATTTTACCACCCTGGAAAGGAATATAATGTCCGTGTAGCTTCAAGATACTTTAAAGGTCCTGAACTTCTAGTCGATTTGCAAGATTACGACTATTCTCTGGACATGTGGAGCCTGGGTTGTATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGCCATGACAACCATGACCAGCTGGTCAAAATTGCCAAGGTACTTGGGACTGATGAGTTGAATGCATATCTGAACAAGTACCATTTAGAGCTTGATCCTCAACTTGATGCACTTGTGGGGAGGCACAGCAGGAAGCCCTGGTCGAAGTTTATTAATGCAGATAATCAGCATCTAGTTTCTCCAGAGGCCATCGATTTTCTGGATAAACTTCTTCGGTATGATCATCAAGACAGGCTAACTGCAAAAGAGGCAATGGGGCATCCATATTTCTCACAAGTGAGGGCAGCAGAAAGCAGCAGGATGCGGACGTAA

Protein Analysis

402

Amino Acids

46.41

Weight (kDa)

8.51

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 239, 917
AatII GACGTC 1 cut(s) 237
Acc16I TGCGCA 2 cut(s) 24, 110
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 92
AciI CCGC 3 cut(s) 156, 247, 1198
AclWI GGATC 2 cut(s) 391, 983
AcoI YGGCCR 1 cut(s) 895
AcsI RAATTY 2 cut(s) 441, 731
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 6 cut(s) 260, 318, 547, 566, 936, 974
AfeI AGCGCT 1 cut(s) 383
AfiI CCNNNNNNNGG 3 cut(s) 288, 460, 748
AflIII ACRYGT 1 cut(s) 834
AgsI TTSAA 4 cut(s) 287, 556, 774, 955
AhdI GACNNNNNGTC 2 cut(s) 271, 470
AjnI CCWGG 3 cut(s) 742, 843, 1031
AluBI AGCT 7 cut(s) 218, 481, 522, 610, 770, 916, 985
AluI AGCT 7 cut(s) 218, 481, 522, 610, 770, 916, 985
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 131, 150
Alw44I GTGCAC 1 cut(s) 61
AlwI GGATC 2 cut(s) 391, 983
Aor51HI AGCGCT 1 cut(s) 383
AoxI GGCC 2 cut(s) 895, 1080
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 4 cut(s) 203, 384, 1178, 1188
ApoI RAATTY 2 cut(s) 441, 731
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AseI ATTAAT 1 cut(s) 1047
AspLEI GCGC 5 cut(s) 25, 85, 94, 111, 384
AspS9I GGNCC 2 cut(s) 464, 788
AsuHPI GGTGA 2 cut(s) 271, 305
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 2 cut(s) 464, 788
BaeGI GKGCMC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 897
BauI CACGAG 2 cut(s) 134, 219
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 215, 371, 1190, 1200
BccI CCATC 1 cut(s) 1091
BciT130I CCWGG 3 cut(s) 744, 845, 1033
BclI TGATCA 2 cut(s) 295, 1114
BcoDI GTCTC 2 cut(s) 131, 150
BfaI CTAG 3 cut(s) 56, 800, 1067
BfmI CTRYAG 1 cut(s) 5
BfoI RGCGCY 1 cut(s) 385
BglII AGATCT 1 cut(s) 174
BisI GCNGC 4 cut(s) 204, 385, 1179, 1189
BlsI GCNGC 4 cut(s) 205, 386, 1180, 1190
BmcAI AGTACT 2 cut(s) 260, 547
Bme1390I CCNGG 3 cut(s) 744, 845, 1033
Bme18I GGWCC 2 cut(s) 464, 788
BmeRI GACNNNNNGTC 2 cut(s) 271, 470
BmgT120I GGNCC 2 cut(s) 464, 788
BmiI GGNNCC 3 cut(s) 465, 842, 882
BmrFI CCNGG 3 cut(s) 744, 845, 1033
BmrI ACTGGG 2 cut(s) 271, 727
BmsI GCATC 4 cut(s) 991, 1072, 1162, 1185
BmuI ACTGGG 2 cut(s) 271, 727
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 2 cut(s) 431, 1059
Bpu14I TTCGAA 1 cut(s) 354
BpuEI CTTGAG 2 cut(s) 386, 599
Bsa29I ATCGAT 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 742, 844, 930, 1031
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 832, 862
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 460, 748
Bse1I ACTGG 2 cut(s) 266, 722
Bse3DI GCAATG 1 cut(s) 1152
BseBI CCWGG 3 cut(s) 744, 845, 1033
BseCI ATCGAT 1 cut(s) 1086
BseDI CCNNGG 4 cut(s) 742, 844, 930, 1031
BseGI GGATG 3 cut(s) 243, 1153, 1200
BseLI CCNNNNNNNGG 3 cut(s) 288, 460, 748
BseMI GCAATG 1 cut(s) 1152
BseNI ACTGG 2 cut(s) 266, 722
BseRI GAGGAG 2 cut(s) 120, 213
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 4 cut(s) 215, 371, 1190, 1200
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 897, 1082
BshVI ATCGAT 1 cut(s) 1086
BsiHKAI GWGCWC 1 cut(s) 65
BslFI GGGAC 5 cut(s) 259, 278, 477, 735, 955
BslI CCNNNNNNNGG 3 cut(s) 288, 460, 748
BsmAI GTCTC 2 cut(s) 131, 150
BsmFI GGGAC 5 cut(s) 259, 278, 477, 735, 955
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 2 cut(s) 897, 1082
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 6 cut(s) 174, 295, 396, 499, 988, 1114
BspACI CCGC 3 cut(s) 156, 247, 1198
BspANI GGCC 2 cut(s) 897, 1082
BspDI ATCGAT 1 cut(s) 1086
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 3 cut(s) 465, 842, 882
BspPI GGATC 2 cut(s) 391, 983
BspT104I TTCGAA 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 1152
BsrI ACTGG 2 cut(s) 266, 722
BssECI CCNNGG 4 cut(s) 742, 844, 930, 1031
BssMI GATC 6 cut(s) 174, 295, 396, 499, 988, 1114
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 2 cut(s) 134, 219
BssT1I CCWWGG 1 cut(s) 930
Bst2BI CACGAG 2 cut(s) 134, 219
Bst2UI CCWGG 3 cut(s) 744, 845, 1033
Bst4CI ACNGT 3 cut(s) 144, 283, 545
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 81
BstF5I GGATG 3 cut(s) 243, 1153, 1200
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 5 cut(s) 25, 85, 94, 111, 384
BstKTI GATC 6 cut(s) 177, 298, 399, 502, 991, 1117
BstMAI GTCTC 2 cut(s) 131, 150
BstMBI GATC 6 cut(s) 174, 295, 396, 499, 988, 1114
BstMWI GCNNNNNNNGC 4 cut(s) 80, 89, 91, 1142
BstNI CCWGG 3 cut(s) 744, 845, 1033
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 3 cut(s) 742, 843, 1031
BstSFI CTRYAG 1 cut(s) 5
BstSLI GKGCMC 1 cut(s) 65
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 4 cut(s) 215, 371, 1190, 1200
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 2 cut(s) 174, 396
BstYI RGATCY 2 cut(s) 174, 396
Bsu15I ATCGAT 1 cut(s) 1086
BsuRI GGCC 2 cut(s) 897, 1082
BsuTUI ATCGAT 1 cut(s) 1086
BtsCI GGATG 3 cut(s) 243, 1153, 1200
BtsIMutI CAGTG 1 cut(s) 572
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 5 cut(s) 25, 85, 94, 111, 384
Cfr13I GGNCC 2 cut(s) 464, 788
ClaI ATCGAT 1 cut(s) 1086
Csp6I GTAC 6 cut(s) 259, 317, 546, 565, 935, 973
CviAII CATG 6 cut(s) 13, 208, 689, 835, 899, 908
CviQI GTAC 6 cut(s) 259, 317, 546, 565, 935, 973
DpnI GATC 6 cut(s) 176, 297, 398, 501, 990, 1116
DpnII GATC 6 cut(s) 174, 295, 396, 499, 988, 1114
DraI TTTAAA 1 cut(s) 784
DrdI GACNNNNNNGTC 2 cut(s) 239, 917
DriI GACNNNNNGTC 2 cut(s) 271, 470
DseDI GACNNNNNNGTC 2 cut(s) 239, 917
EaeI YGGCCR 1 cut(s) 895
Eam1104I CTCTTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 2 cut(s) 271, 470
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 930
Eco47I GGWCC 2 cut(s) 464, 788
Eco47III AGCGCT 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 788
EcoRII CCWGG 3 cut(s) 742, 843, 1031
EcoT14I CCWWGG 1 cut(s) 930
EcoT22I ATGCAT 2 cut(s) 654, 961
ErhI CCWWGG 1 cut(s) 930
FaeI CATG 6 cut(s) 16, 211, 692, 838, 902, 911
FaqI GGGAC 5 cut(s) 259, 278, 477, 735, 955
FatI CATG 6 cut(s) 12, 207, 688, 834, 898, 907
FbaI TGATCA 2 cut(s) 295, 1114
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 204, 385, 1179, 1189
FokI GGATG 2 cut(s) 230, 1140
Fsp4HI GCNGC 4 cut(s) 204, 385, 1179, 1189
FspAI RTGCGCAY 2 cut(s) 24, 110
FspBI CTAG 3 cut(s) 56, 800, 1067
FspI TGCGCA 2 cut(s) 24, 110
GlaI GCGC 5 cut(s) 24, 84, 93, 110, 383
GluI GCNGC 4 cut(s) 204, 385, 1179, 1189
GsuI CTGGAG 2 cut(s) 431, 1059
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 2 cut(s) 897, 1082
HhaI GCGC 5 cut(s) 25, 85, 94, 111, 384
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 6 cut(s) 16, 211, 692, 838, 902, 911
Hin6I GCGC 5 cut(s) 23, 83, 92, 109, 382
HinP1I GCGC 5 cut(s) 23, 83, 92, 109, 382
HindIII AAGCTT 2 cut(s) 479, 520
HinfI GANTC 1 cut(s) 272
HphI GGTGA 2 cut(s) 271, 305
Hpy166II GTNNAC 3 cut(s) 63, 226, 541
Hpy188I TCNGA 5 cut(s) 174, 187, 197, 497, 966
Hpy8I GTNNAC 3 cut(s) 63, 226, 541
HpyAV CCTTC 2 cut(s) 324, 350
HpyCH4III ACNGT 3 cut(s) 144, 283, 545
HpyCH4IV ACGT 2 cut(s) 234, 1202
HpyCH4V TGCA 8 cut(s) 63, 387, 652, 811, 959, 1004, 1052, 1136
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 89, 91, 1142
HpySE526I ACGT 2 cut(s) 234, 1202
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 6 cut(s) 16, 211, 692, 838, 902, 911
HspAI GCGC 5 cut(s) 23, 83, 92, 109, 382
Ksp22I TGATCA 2 cut(s) 295, 1114
Kzo9I GATC 6 cut(s) 174, 295, 396, 499, 988, 1114
LmnI GCTCC 2 cut(s) 200, 840
Lsp1109I GCAGC 4 cut(s) 215, 371, 1190, 1200
LweI GCATC 4 cut(s) 991, 1072, 1162, 1185
MaeI CTAG 3 cut(s) 56, 800, 1067
MaeII ACGT 2 cut(s) 234, 1202
MalI GATC 6 cut(s) 176, 297, 398, 501, 990, 1116
MboI GATC 6 cut(s) 174, 295, 396, 499, 988, 1114
MboII GAAGA 6 cut(s) 35, 343, 427, 430, 433, 1097
MflI RGATCY 2 cut(s) 174, 396
MhlI GDGCHC 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 897
MluCI AATT 4 cut(s) 441, 692, 731, 924
MluNI TGGCCA 1 cut(s) 897
MlyI GAGTC 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 897
Mph1103I ATGCAT 2 cut(s) 654, 961
MscI TGGCCA 1 cut(s) 897
MseI TTAA 4 cut(s) 411, 426, 783, 1047
MslI CAYNNNNRTG 1 cut(s) 657
Msp20I TGGCCA 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 916
MspR9I CCNGG 3 cut(s) 744, 845, 1033
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 3 cut(s) 744, 845, 1033
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 80, 89, 91, 1142
NdeII GATC 6 cut(s) 174, 295, 396, 499, 988, 1114
NlaIII CATG 6 cut(s) 16, 211, 692, 838, 902, 911
NlaIV GGNNCC 3 cut(s) 465, 842, 882
NmeAIII GCCGAG 1 cut(s) 158
NsbI TGCGCA 2 cut(s) 24, 110
NsiI ATGCAT 2 cut(s) 654, 961
NspI RCATGY 1 cut(s) 838
NspV TTCGAA 1 cut(s) 354
PciI ACATGT 1 cut(s) 834
PctI GAATGC 1 cut(s) 961
PflFI GACNNNGTC 2 cut(s) 142, 491
PkrI GCNGC 4 cut(s) 205, 386, 1180, 1190
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 788
PscI ACATGT 1 cut(s) 834
PshBI ATTAAT 1 cut(s) 1047
Psp5II RGGWCCY 1 cut(s) 788
Psp6I CCWGG 3 cut(s) 742, 843, 1031
PspGI CCWGG 3 cut(s) 742, 843, 1031
PspN4I GGNNCC 3 cut(s) 465, 842, 882
PspPI GGNCC 2 cut(s) 464, 788
PspPPI RGGWCCY 1 cut(s) 788
PsuI RGATCY 2 cut(s) 174, 396
PsyI GACNNNGTC 2 cut(s) 142, 491
PvuII CAGCTG 1 cut(s) 916
RsaI GTAC 6 cut(s) 260, 318, 547, 566, 936, 974
RsaNI GTAC 6 cut(s) 259, 317, 546, 565, 935, 973
RseI CAYNNNNRTG 1 cut(s) 657
SaqAI TTAA 4 cut(s) 411, 426, 783, 1047
SatI GCNGC 4 cut(s) 204, 385, 1179, 1189
Sau3AI GATC 6 cut(s) 174, 295, 396, 499, 988, 1114
Sau96I GGNCC 2 cut(s) 464, 788
ScaI AGTACT 2 cut(s) 260, 547
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 744, 845, 1033
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 4 cut(s) 991, 1072, 1162, 1185
SfcI CTRYAG 1 cut(s) 5
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 2 cut(s) 464, 788
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 2 cut(s) 401, 614
SmoI CTYRAG 2 cut(s) 401, 614
Sse9I AATT 4 cut(s) 441, 692, 731, 924
SsiI CCGC 3 cut(s) 156, 247, 1198
SspMI CTAG 3 cut(s) 56, 800, 1067
StyD4I CCNGG 3 cut(s) 742, 843, 1031
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 3 cut(s) 144, 283, 545
TaiI ACGT 2 cut(s) 237, 1205
TaqI TCGA 4 cut(s) 354, 804, 1037, 1086
TaqII GACCGA 1 cut(s) 481
TasI AATT 4 cut(s) 441, 692, 731, 924
TatI WGTACW 2 cut(s) 258, 545
Tru1I TTAA 4 cut(s) 411, 426, 783, 1047
Tru9I TTAA 4 cut(s) 411, 426, 783, 1047
TscAI CASTG 1 cut(s) 579
TseI GCWGC 4 cut(s) 203, 384, 1178, 1188
TspDTI ATGAA 2 cut(s) 324, 705
TspGWI ACGGA 2 cut(s) 334, 752
TspRI CASTG 1 cut(s) 579
Tth111I GACNNNGTC 2 cut(s) 142, 491
VneI GTGCAC 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 464, 788
VspI ATTAAT 1 cut(s) 1047
XapI RAATTY 2 cut(s) 441, 731
XceI RCATGY 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 2 cut(s) 455, 1090
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 3 cut(s) 56, 800, 1067
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 2 cut(s) 260, 547
Zsp2I ATGCAT 2 cut(s) 654, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.