AT2G25570

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007196
Physical Location & Seq
Reverse (-)
10884966 .. 10887979
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25570.2

Sequence Viewer

Length: 867 bp
ATGTTTCGTCGTTTAATTCTCCGGCAAGCAGCCGCCGTCGCCGCGGAATCGAAGATTGCTTGTCATCATACTGTTCATGGATTCGAACAGCGAAGAGGATTACACAGTAGGAATGAGAAGGCAATGGAGTATGTAGCCAAAGGATGGAGCGCGATTAAAGAAGTAGAGAGAGTTATCGATTACTGTGAACTCAATGATCGTCGTCTTATTCCTCTCCTCAGGGGAGCTAAAGAGAACTTTGAACTTGCTCTGGAAGCTGATAATTTGAACACTCATGCTAGGTATTGGCTTTCCAAGTTGCACCTGAAGTACCATGTTCCTGGAGCTTGTAAAGCTGTGGGAGCTGCTTTGCTTGTCGAAGCTGCAGACATGGGTAATGCAGATGCTCAATATGAGCTAGGGTGTCGTTTAAGAGTCGAGAATGATCATGTCCAGTCGGATCAACAGGCGTTTCACTATATAGAGAATGCTGTTGATCAGCTACATCCAGGTGCCCTCTATCTTTTAGGAATAGTGTATCTGACAGGAGACTGTGTGAAGCAAGATGTGGATTCAGCTATATGGTGTTTCCATAGGGCTTCAGAGAAGGGACATGCTGGTGCTGCTATAGCATATGGATCTCTTTTACTTAGAGGTGTGCAAGTCCCAGAATCTCTAACAAAATTGAACGTCGTGGGAGTTTCACCTCCCAAGAGAGCAAGAAAGAACCTGGAAAATCCGGAGATGAATCCATTAGAGATGGCAAAAGAACAGTTCCAAATCGCTGCAAGAGCAGGGTGCGATCTAGGGCTGAAATGGCTGCAAAGGGTGGAGCAAGAAGAGAAACTTCTTATGAGGGAACAAGATAACGAATGTGCCTATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

288

Amino Acids

32.41

Weight (kDa)

6.64

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 81 - 114 1.3e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 144
AccII CGCG 2 cut(s) 44, 152
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 3 cut(s) 33, 42, 44
AclWI GGATC 2 cut(s) 447, 625
AcuI CTGAAG 2 cut(s) 326, 564
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 3 cut(s) 242, 268, 667
AjnI CCWGG 3 cut(s) 319, 487, 708
AluBI AGCT 9 cut(s) 227, 257, 326, 335, 344, 362, 397, 481, 557
AluI AGCT 9 cut(s) 227, 257, 326, 335, 344, 362, 397, 481, 557
Alw26I GTCTC 1 cut(s) 522
AlwI GGATC 2 cut(s) 447, 625
Aor13HI TCCGGA 1 cut(s) 718
ApeKI GCWGC 6 cut(s) 29, 344, 362, 602, 764, 799
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 675
AsuII TTCGAA 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 491
BbvI GCAGC 6 cut(s) 41, 331, 349, 589, 751, 786
BccI CCATC 2 cut(s) 138, 733
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 3 cut(s) 321, 489, 710
BclI TGATCA 2 cut(s) 424, 475
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 3 cut(s) 279, 398, 785
BfmI CTRYAG 2 cut(s) 363, 606
BisI GCNGC 8 cut(s) 30, 33, 42, 345, 363, 603, 765, 800
BlsI GCNGC 8 cut(s) 31, 34, 43, 346, 364, 604, 766, 801
Bme1390I CCNGG 3 cut(s) 321, 489, 710
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 3 cut(s) 321, 489, 710
BmsI GCATC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 433
Bse21I CCTNAGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 3 cut(s) 321, 489, 710
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 149, 484
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 6 cut(s) 41, 331, 349, 589, 751, 786
Bsh1236I CGCG 2 cut(s) 44, 152
BshNI GGYRCC 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 177
BsiSI CCGG 2 cut(s) 22, 719
BslFI GGGAC 2 cut(s) 603, 629
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 522
BsmFI GGGAC 2 cut(s) 603, 629
BsmI GAATGC 1 cut(s) 472
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 496
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 6 cut(s) 196, 424, 439, 475, 617, 781
BspACI CCGC 3 cut(s) 33, 42, 44
BspCNI CTCAG 1 cut(s) 231
BspDI ATCGAT 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 718
BspFNI CGCG 2 cut(s) 44, 152
BspLI GGNNCC 1 cut(s) 493
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 2 cut(s) 447, 625
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 6 cut(s) 196, 424, 439, 475, 617, 781
Bst2UI CCWGG 3 cut(s) 321, 489, 710
Bst4CI ACNGT 5 cut(s) 73, 107, 185, 533, 753
Bst6I CTCTTC 2 cut(s) 88, 813
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 218, 629
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 149, 484
BstFNI CGCG 2 cut(s) 44, 152
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 6 cut(s) 199, 427, 442, 478, 620, 784
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 6 cut(s) 196, 424, 439, 475, 617, 781
BstMWI GCNNNNNNNGC 9 cut(s) 38, 41, 254, 332, 341, 602, 608, 770, 796
BstNI CCWGG 3 cut(s) 321, 489, 710
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 3 cut(s) 319, 487, 708
BstSFI CTRYAG 2 cut(s) 363, 606
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 2 cut(s) 44, 152
BstV1I GCAGC 6 cut(s) 41, 331, 349, 589, 751, 786
BstX2I RGATCY 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 1 cut(s) 617
Bsu15I ATCGAT 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 149, 484
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 152
Cfr42I CCGCGG 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 1 cut(s) 310
CviAII CATG 6 cut(s) 77, 275, 314, 370, 428, 593
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 218, 629
DpnI GATC 6 cut(s) 198, 426, 441, 477, 619, 783
DpnII GATC 6 cut(s) 196, 424, 439, 475, 617, 781
Eam1104I CTCTTC 2 cut(s) 88, 813
EarI CTCTTC 2 cut(s) 88, 813
Eco57I CTGAAG 2 cut(s) 326, 564
Eco81I CCTNAGG 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 319, 487, 708
FaeI CATG 6 cut(s) 80, 278, 317, 373, 431, 596
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 2 cut(s) 603, 629
FatI CATG 6 cut(s) 76, 274, 313, 369, 427, 592
FauNDI CATATG 1 cut(s) 613
FbaI TGATCA 2 cut(s) 424, 475
Fnu4HI GCNGC 8 cut(s) 30, 33, 42, 345, 363, 603, 765, 800
FokI GGATG 2 cut(s) 156, 471
Fsp4HI GCNGC 8 cut(s) 30, 33, 42, 345, 363, 603, 765, 800
FspBI CTAG 3 cut(s) 279, 398, 785
GlaI GCGC 1 cut(s) 151
GluI GCNGC 8 cut(s) 30, 33, 42, 345, 363, 603, 765, 800
GsuI CTGGAG 1 cut(s) 342
HapII CCGG 2 cut(s) 22, 719
HhaI GCGC 1 cut(s) 152
Hin1II CATG 6 cut(s) 80, 278, 317, 373, 431, 596
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 6 cut(s) 47, 81, 414, 551, 650, 727
HpaII CCGG 2 cut(s) 22, 719
HphI GGTGA 1 cut(s) 675
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 3 cut(s) 439, 522, 583
Hpy188III TCNNGA 3 cut(s) 251, 418, 719
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 4 cut(s) 12, 41, 204, 674
HpyAV CCTTC 2 cut(s) 112, 580
HpyCH4III ACNGT 5 cut(s) 73, 107, 185, 533, 753
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 6 cut(s) 301, 365, 380, 640, 767, 802
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 41, 254, 332, 341, 602, 608, 770, 796
HpyF3I CTNAG 2 cut(s) 218, 629
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 6 cut(s) 80, 278, 317, 373, 431, 596
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 718
Ksp22I TGATCA 2 cut(s) 424, 475
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 6 cut(s) 196, 424, 439, 475, 617, 781
LmnI GCTCC 5 cut(s) 147, 224, 323, 341, 811
Lsp1109I GCAGC 6 cut(s) 41, 331, 349, 589, 751, 786
LweI GCATC 1 cut(s) 373
MaeI CTAG 3 cut(s) 279, 398, 785
MaeII ACGT 1 cut(s) 669
MalI GATC 6 cut(s) 198, 426, 441, 477, 619, 783
MboI GATC 6 cut(s) 196, 424, 439, 475, 617, 781
MboII GAAGA 3 cut(s) 64, 105, 830
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 3 cut(s) 15, 262, 662
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 7 cut(s) 89, 222, 227, 506, 626, 696, 828
MroI TCCGGA 1 cut(s) 718
MseI TTAA 3 cut(s) 14, 156, 410
MslI CAYNNNNRTG 2 cut(s) 489, 597
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 22, 719
MspR9I CCNGG 3 cut(s) 321, 489, 710
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 3 cut(s) 321, 489, 710
MvnI CGCG 2 cut(s) 44, 152
MwoI GCNNNNNNNGC 9 cut(s) 38, 41, 254, 332, 341, 602, 608, 770, 796
NdeI CATATG 1 cut(s) 613
NdeII GATC 6 cut(s) 196, 424, 439, 475, 617, 781
NlaIII CATG 6 cut(s) 80, 278, 317, 373, 431, 596
NlaIV GGNNCC 1 cut(s) 493
NspI RCATGY 1 cut(s) 596
NspV TTCGAA 1 cut(s) 84
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 5 cut(s) 47, 81, 551, 650, 727
PflMI CCANNNNNTGG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 8 cut(s) 31, 34, 43, 346, 364, 604, 766, 801
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp6I CCWGG 3 cut(s) 319, 487, 708
PspGI CCWGG 3 cut(s) 319, 487, 708
PspN4I GGNNCC 1 cut(s) 493
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 617
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 2 cut(s) 489, 597
SacII CCGCGG 1 cut(s) 45
SaqAI TTAA 3 cut(s) 14, 156, 410
SatI GCNGC 8 cut(s) 30, 33, 42, 345, 363, 603, 765, 800
Sau3AI GATC 6 cut(s) 196, 424, 439, 475, 617, 781
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 3 cut(s) 321, 489, 710
SduI GDGCHC 1 cut(s) 496
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 2 cut(s) 363, 606
Sfr303I CCGCGG 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 84
SgrBI CCGCGG 1 cut(s) 45
SmiMI CAYNNNNRTG 2 cut(s) 489, 597
Sse9I AATT 3 cut(s) 15, 262, 662
SsiI CCGC 3 cut(s) 33, 42, 44
SspMI CTAG 3 cut(s) 279, 398, 785
StyD4I CCNGG 3 cut(s) 319, 487, 708
TaaI ACNGT 5 cut(s) 73, 107, 185, 533, 753
TaiI ACGT 1 cut(s) 672
TaqI TCGA 5 cut(s) 50, 84, 177, 357, 417
TasI AATT 3 cut(s) 15, 262, 662
TauI GCSGC 2 cut(s) 35, 44
TfiI GAWTC 5 cut(s) 47, 81, 551, 650, 727
Tru1I TTAA 3 cut(s) 14, 156, 410
Tru9I TTAA 3 cut(s) 14, 156, 410
TseI GCWGC 6 cut(s) 29, 344, 362, 602, 764, 799
TspDTI ATGAA 2 cut(s) 65, 740
Van91I CCANNNNNTGG 1 cut(s) 144
XceI RCATGY 1 cut(s) 596
XspI CTAG 3 cut(s) 279, 398, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.