Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007196

Physical Location & Seq

Genomic Coordinates Forward (+)

26086538 .. 26087348

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G277700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATGCAGAGGCGGCTCTTGAAGAAGCTCAGTTTCAGACCTCCCAATGGCGTCACTCAATTCAATCAACGGAGAGAGATGCACAGCAGGAACAAGAAGGCCATGGAATTGATAGCCAAAGGGGCAGCAAAGGAAAACTTTGAGCTGGCTCTGGACGCTGACAATTCAAACACCCATGCCAGGTTTTGGTTGTCCAAACTGCATTTGAAATACCATGTCCCGGGGGCTTGCAGAGCCATAGGAGCTGCTCTGTTAATTGAAGCCGCGAATATGGGTGATCCGGATGCGCAGTATGAACTAGGTTGTAAGCTTAGAGTCGAAAATGAATACGCCCAATCGGATCAACAAGCTTTCCATTATCTGGAGAAGGCTGTGGATGCCGTGTATCTCACGGGGGAGTGTGCGAAGAAAGATATTGCCTCTGCATTGTGGTGTTTACATAGGGCATCGGACAAGGGGCATGCCGGTGCAGCTATAGCATTTGGGTCTCTTGTTCTTAGAGGTGTTGAAATCCCAGAATCTGTGACCAAGCTCACTTCAAAGAGGGGTTCTTTGGCCAGGACGGCAAGAAAGAATGGAGAAAGCCTTGTAACAGATCCTGTAGAGATGGCGAGAGAACGGTTCCAGATTGCTGCGAAAGGAGGATGTGATTTAGGACTCAAATGGTTGGAAAGACTTGAGGAGGAAGAGAAGCAACTATTGACTGGAAGTGAAATGGTTGAACAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1

Protein Analysis

244

Amino Acids

27.06

Weight (kDa)

8.74

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25570 AT2G25570 AT2G25570
fragaria_vesca	FvH4_5g12980 FvH4_5g12980
malus_domestica	MD02G1034400.v1.1 MD15G1175100.v1.1
prunus_persica	Prupe.6G277700_v2.0.a1
pyrus_communis	pycom02g02810 pycom15g15660
rosa_chinensis	RchiOBHm_Chr2g0088741 RchiOBHm_Chr2g0088971 RchiOBHm_Chr2g0089021
rosa_laevigata	RLG00000015983
rosa_multiflora	Rmu_co8507067.1_g000001 Rmu_sc0006835.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152340
rosa_rugosa	Rorug01G0486600
rosa_samantha	Rh2AG042100 Rh2BG040600 Rh2CG041500 Rh2CG042100 Rh2DG041100
rosa_wichuraiana	Rw2G003540 Rw5G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
AccB7I	CCANNNNNTGG	2 cut(s)	186, 361
AccII	CGCG	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	2 cut(s)	13, 264
AclWI	GGATC	3 cut(s)	272, 348, 590
AcoI	YGGCCR	1 cut(s)	555
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	5 cut(s)	47, 180, 186, 220, 361
AgsI	TTSAA	8 cut(s)	22, 64, 168, 208, 260, 509, 540, 722
AjnI	CCWGG	2 cut(s)	179, 557
AluBI	AGCT	7 cut(s)	28, 145, 245, 310, 350, 473, 532
AluI	AGCT	7 cut(s)	28, 145, 245, 310, 350, 473, 532
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	3 cut(s)	272, 348, 590
AlwNI	CAGNNNCTG	2 cut(s)	521, 599
Ama87I	CYCGRG	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	2 cut(s)	99, 555
ApeKI	GCWGC	4 cut(s)	125, 245, 470, 632
AspLEI	GCGC	1 cut(s)	289
AsuC2I	CCSGG	2 cut(s)	221, 222
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	557
BbvI	GCAGC	4 cut(s)	137, 232, 482, 619
BccI	CCATC	1 cut(s)	601
BceAI	ACGGC	2 cut(s)	365, 579
BciT130I	CCWGG	2 cut(s)	181, 559
BcnI	CCSGG	2 cut(s)	221, 222
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	2 cut(s)	474, 600
BglI	GCCNNNNNGGC	2 cut(s)	122, 563
BisI	GCNGC	6 cut(s)	14, 126, 246, 264, 471, 633
BlsI	GCNGC	6 cut(s)	15, 127, 247, 265, 472, 634
Bme1390I	CCNGG	4 cut(s)	181, 221, 222, 559
BmeT110I	CYCGRG	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	623
BmrFI	CCNGG	4 cut(s)	181, 221, 222, 559
BmsI	GCATC	4 cut(s)	69, 274, 367, 455
BpmI	CTGGAG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	2 cut(s)	221, 222
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	3 cut(s)	102, 220, 221
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 180, 186, 220, 361
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	709
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	181, 559
BseDI	CCNNGG	3 cut(s)	102, 220, 221
BseGI	GGATG	3 cut(s)	289, 382, 650
BseLI	CCNNNNNNNGG	5 cut(s)	47, 180, 186, 220, 361
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	4 cut(s)	137, 232, 482, 619
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	101, 557
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	3 cut(s)	221, 281, 465
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	5 cut(s)	47, 180, 186, 220, 361
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	101, 557
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	220
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	277, 340, 595
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	2 cut(s)	13, 264
BspANI	GGCC	2 cut(s)	101, 557
BspCNI	CTCAG	1 cut(s)	42
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	623
BspPI	GGATC	3 cut(s)	272, 348, 590
BspTNI	GGTCTC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	709
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	102, 220, 221
BssMI	GATC	3 cut(s)	277, 340, 595
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	2 cut(s)	181, 559
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	1 cut(s)	681
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	147, 229, 462
BstDEI	CTNAG	3 cut(s)	29, 311, 497
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	289, 382, 650
BstFNI	CGCG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	280, 343, 598
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	3 cut(s)	277, 340, 595
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 122, 155, 233, 242, 377, 470, 476, 563
BstNI	CCWGG	2 cut(s)	181, 559
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	4 cut(s)	179, 219, 220, 557
BstSFI	CTRYAG	2 cut(s)	474, 600
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	4 cut(s)	137, 232, 482, 619
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	101, 557
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	289, 382, 650
Cac8I	GCNNGC	3 cut(s)	147, 229, 462
CaiI	CAGNNNCTG	2 cut(s)	521, 599
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	464
Cfr9I	CCCGGG	1 cut(s)	220
CseI	GACGC	2 cut(s)	40, 164
CviAII	CATG	4 cut(s)	103, 176, 215, 461
DdeI	CTNAG	3 cut(s)	29, 311, 497
DpnI	GATC	3 cut(s)	279, 342, 597
DpnII	GATC	3 cut(s)	277, 340, 595
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	179, 557
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	106, 179, 218, 464
FaiI	YATR	9 cut(s)	104, 177, 216, 239, 272, 294, 441, 462, 476
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	4 cut(s)	102, 175, 214, 460
Fnu4HI	GCNGC	6 cut(s)	14, 126, 246, 264, 471, 633
FokI	GGATG	3 cut(s)	296, 389, 657
Fsp4HI	GCNGC	6 cut(s)	14, 126, 246, 264, 471, 633
FspBI	CTAG	1 cut(s)	299
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	6 cut(s)	14, 126, 246, 264, 471, 633
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	101, 557
HapII	CCGG	3 cut(s)	221, 281, 465
HgaI	GACGC	2 cut(s)	40, 164
HhaI	GCGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	106, 179, 218, 464
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HindIII	AAGCTT	2 cut(s)	308, 348
HinfI	GANTC	3 cut(s)	315, 518, 657
HpaII	CCGG	3 cut(s)	221, 281, 465
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	3 cut(s)	38, 340, 451
Hpy188III	TCNNGA	5 cut(s)	19, 152, 281, 362, 625
Hpy8I	GTNNAC	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	91, 361
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	7, 82, 202, 231, 425, 470
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 122, 155, 233, 242, 377, 470, 476, 563
HpyF3I	CTNAG	3 cut(s)	29, 311, 497
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	106, 179, 218, 464
HspAI	GCGC	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	277, 340, 595
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	4 cut(s)	137, 232, 482, 619
LweI	GCATC	4 cut(s)	69, 274, 367, 455
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	52, 523, 589
MalI	GATC	3 cut(s)	279, 342, 597
MboI	GATC	3 cut(s)	277, 340, 595
MboII	GAAGA	3 cut(s)	34, 418, 698
MflI	RGATCY	1 cut(s)	595
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	4 cut(s)	59, 107, 163, 255
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	2 cut(s)	324, 651
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	8 cut(s)	3, 51, 430, 494, 537, 635, 673, 676
Mox20I	TGGCCA	1 cut(s)	557
MroI	TCCGGA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	2 cut(s)	430, 465
Msp20I	TGGCCA	1 cut(s)	557
MspI	CCGG	3 cut(s)	221, 281, 465
MspR9I	CCNGG	4 cut(s)	181, 221, 222, 559
MvaI	CCWGG	2 cut(s)	181, 559
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	9 cut(s)	13, 122, 155, 233, 242, 377, 470, 476, 563
NciI	CCSGG	2 cut(s)	221, 222
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	277, 340, 595
NlaIII	CATG	4 cut(s)	106, 179, 218, 464
NlaIV	GGNNCC	1 cut(s)	623
NmuCI	GTSAC	2 cut(s)	52, 523
NsbI	TGCGCA	1 cut(s)	288
NspI	RCATGY	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	518
PflMI	CCANNNNNTGG	2 cut(s)	186, 361
PkrI	GCNGC	6 cut(s)	15, 127, 247, 265, 472, 634
PleI	GAGTC	2 cut(s)	323, 651
PpsI	GAGTC	2 cut(s)	323, 651
Psp6I	CCWGG	2 cut(s)	179, 557
PspGI	CCWGG	2 cut(s)	179, 557
PspN4I	GGNNCC	1 cut(s)	623
PstNI	CAGNNNCTG	2 cut(s)	521, 599
PsuI	RGATCY	1 cut(s)	595
RseI	CAYNNNNRTG	2 cut(s)	430, 465
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	6 cut(s)	14, 126, 246, 264, 471, 633
Sau3AI	GATC	3 cut(s)	277, 340, 595
SchI	GAGTC	2 cut(s)	324, 651
ScrFI	CCNGG	4 cut(s)	181, 221, 222, 559
SfaNI	GCATC	4 cut(s)	69, 274, 367, 455
SfcI	CTRYAG	2 cut(s)	474, 600
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	430, 465
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	4 cut(s)	59, 107, 163, 255
SsiI	CCGC	2 cut(s)	13, 264
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	4 cut(s)	179, 219, 220, 557
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	318
TasI	AATT	4 cut(s)	59, 107, 163, 255
TauI	GCSGC	2 cut(s)	16, 266
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseFI	GTSAC	2 cut(s)	52, 523
TseI	GCWGC	4 cut(s)	125, 245, 470, 632
Tsp45I	GTSAC	2 cut(s)	52, 523
TspDTI	ATGAA	2 cut(s)	309, 339
TspGWI	ACGGA	1 cut(s)	85
TspMI	CCCGGG	1 cut(s)	220
Van91I	CCANNNNNTGG	2 cut(s)	186, 361
XceI	RCATGY	1 cut(s)	464
XmaI	CCCGGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.