Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007196

Physical Location & Seq

Genomic Coordinates Reverse (-)

3375786 .. 3379268

Gene Structure 3483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG042100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCAGCGGCAGCTCTTGAACAAGCTCAGCTGGAGAGCCGTCAATGGATTTGCTCAGTTCACTCAAAGGAGAGCGATGCACGATAGGAACAAGAAGGCGATGGAGTTAATAGCCAAAGGGTGGAGCGCTCTGAAGGAAGTTGATAGAGTCATTGATTACTGCGAGCTCAATGATCGCCGCCTCATTCCTTTATTAAGGGCAGCAAAAGATAATTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTTTTGGTTGTCCAGATTGCATTTGAAATACCATGTCCCAGGGGCGTGCAAAGCTATAGGAGCTGCTTTGTTAGTTGAAGCGGCAAATATGGGTGATGCAGATGCACAATATGAACTTGCTTGTCGTCTTAGAGTTGAGAATGAATATGTCCAATCGGATCAACAAGCTTTCCATTATCTGGAGAAGGCAGTTGACCAGTTGCATCCTGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGTCCAGAAAGATGTTGCATCCGCCTTATGGTGTTTCCATAGGGCATCAGAGAAGGGACATGCTGGTGCCGCTATAGCATATGGGTCTCTTCTTCTTCAAGGTGTTGAAGTCCCAGAATCTGTGATGAACTTGACTTCAAAAAGGGGTTCTTTAGCCAGAAAGGCAAGAAAGAATGCAGAAAGCATTGTAAGAGACCAGGCAGGAATGGCAAGAGAGCGGTTTCAGATCGCTGCAAAAGCAGGATGTGATCTTGGACTGAAATGGTTGGAAAGACTTGACGAGGAAGAGAAGCATCTATTGACTGAAAATGAAATGGTAGAAAATGCCCAAGGAGGAAAGAAGGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1

Protein Analysis

286

Amino Acids

32.11

Weight (kDa)

8.4

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25570 AT2G25570 AT2G25570
fragaria_vesca	FvH4_5g12980 FvH4_5g12980
malus_domestica	MD02G1034400.v1.1 MD15G1175100.v1.1
prunus_persica	Prupe.6G277700_v2.0.a1
pyrus_communis	pycom02g02810 pycom15g15660
rosa_chinensis	RchiOBHm_Chr2g0088741 RchiOBHm_Chr2g0088971 RchiOBHm_Chr2g0089021
rosa_laevigata	RLG00000015983
rosa_multiflora	Rmu_co8507067.1_g000001 Rmu_sc0006835.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152340
rosa_rugosa	Rorug01G0486600
rosa_samantha	Rh2AG042100 Rh2BG040600 Rh2CG041500 Rh2CG042100 Rh2DG041100
rosa_wichuraiana	Rw2G003540 Rw5G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	575
AccB7I	CCANNNNNTGG	3 cut(s)	120, 261, 436
AccBSI	CCGCTC	1 cut(s)	727
AciI	CCGC	6 cut(s)	7, 178, 338, 531, 579, 727
AclWI	GGATC	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	127
AfiI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
AgsI	TTSAA	6 cut(s)	19, 283, 335, 608, 617, 648
AjnI	CCWGG	4 cut(s)	254, 295, 463, 705
AluBI	AGCT	7 cut(s)	13, 25, 30, 166, 311, 320, 425
AluI	AGCT	7 cut(s)	13, 25, 30, 166, 311, 320, 425
Alw21I	GWGCWC	2 cut(s)	168, 472
Alw26I	GTCTC	4 cut(s)	224, 498, 600, 696
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	127
ApeKI	GCWGC	5 cut(s)	4, 10, 200, 320, 740
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	168, 472
BbvI	GCAGC	5 cut(s)	16, 22, 212, 307, 727
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	4 cut(s)	256, 297, 465, 707
BcoDI	GTCTC	4 cut(s)	224, 498, 600, 696
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	312, 582
BfoI	RGCGCY	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	671
BisI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	9 cut(s)	6, 9, 12, 179, 202, 322, 340, 580, 742
Bme1390I	CCNGG	4 cut(s)	256, 297, 465, 707
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	4 cut(s)	256, 297, 465, 707
BmsI	GCATC	7 cut(s)	66, 343, 349, 469, 536, 563, 811
BpmI	CTGGAG	2 cut(s)	52, 458
Bpu1102I	GCTNAGC	1 cut(s)	26
BsaI	GGTCTC	2 cut(s)	600, 696
BsaJI	CCNNGG	3 cut(s)	295, 296, 838
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
Bse1I	ACTGG	1 cut(s)	454
BseBI	CCWGG	4 cut(s)	256, 297, 465, 707
BseDI	CCNNGG	3 cut(s)	295, 296, 838
BseGI	GGATG	3 cut(s)	460, 527, 758
BseLI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
BseMII	CTCAG	2 cut(s)	40, 68
BseNI	ACTGG	1 cut(s)	454
BseXI	GCAGC	5 cut(s)	16, 22, 212, 307, 727
BshNI	GGYRCC	1 cut(s)	575
BsiHKAI	GWGCWC	2 cut(s)	168, 472
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	3 cut(s)	278, 579, 605
BslI	CCNNNNNNNGG	5 cut(s)	120, 255, 261, 436, 537
BsmAI	GTCTC	4 cut(s)	224, 498, 600, 696
BsmFI	GGGAC	3 cut(s)	278, 579, 605
BsmI	GAATGC	1 cut(s)	688
Bso31I	GGTCTC	2 cut(s)	600, 696
Bsp1286I	GDGCHC	2 cut(s)	168, 472
Bsp143I	GATC	4 cut(s)	172, 415, 735, 757
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	6 cut(s)	7, 178, 338, 531, 579, 727
BspCNI	CTCAG	2 cut(s)	39, 67
BspLI	GGNNCC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	575
BspTNI	GGTCTC	2 cut(s)	600, 696
BsrBI	CCGCTC	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	295, 296, 838
BssMI	GATC	4 cut(s)	172, 415, 735, 757
BssT1I	CCWWGG	1 cut(s)	838
Bst2UI	CCWGG	4 cut(s)	256, 297, 465, 707
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	603, 789
BstC8I	GCNNGC	2 cut(s)	164, 304
BstDEI	CTNAG	3 cut(s)	26, 54, 386
BstF5I	GGATG	3 cut(s)	460, 527, 758
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	4 cut(s)	175, 418, 738, 760
BstMAI	GTCTC	4 cut(s)	224, 498, 600, 696
BstMBI	GATC	4 cut(s)	172, 415, 735, 757
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 671, 716, 746
BstNI	CCWGG	4 cut(s)	256, 297, 465, 707
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	4 cut(s)	254, 295, 463, 705
BstSFI	CTRYAG	2 cut(s)	312, 582
BstV1I	GCAGC	5 cut(s)	16, 22, 212, 307, 727
BtgZI	GCGATG	2 cut(s)	89, 113
BtsCI	GGATG	3 cut(s)	460, 527, 758
Cac8I	GCNNGC	2 cut(s)	164, 304
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	128
CviAII	CATG	3 cut(s)	251, 290, 569
DdeI	CTNAG	3 cut(s)	26, 54, 386
DpnI	GATC	4 cut(s)	174, 417, 737, 759
DpnII	GATC	4 cut(s)	172, 415, 735, 757
Eam1104I	CTCTTC	2 cut(s)	603, 789
EarI	CTCTTC	2 cut(s)	603, 789
EciI	GGCGGA	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	838
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	2 cut(s)	600, 696
Eco47III	AGCGCT	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	4 cut(s)	254, 295, 463, 705
EcoT14I	CCWWGG	1 cut(s)	838
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	838
FaeI	CATG	3 cut(s)	254, 293, 572
FalI	AAGNNNNNCTT	2 cut(s)	643, 675
FaqI	GGGAC	3 cut(s)	278, 579, 605
FatI	CATG	3 cut(s)	250, 289, 568
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
FokI	GGATG	3 cut(s)	447, 514, 765
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
GsuI	CTGGAG	2 cut(s)	52, 458
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	254, 293, 572
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	2 cut(s)	147, 626
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	60, 451
Hpy188I	TCNGA	5 cut(s)	132, 415, 498, 559, 735
Hpy188III	TCNNGA	5 cut(s)	16, 227, 270, 437, 514
Hpy8I	GTNNAC	2 cut(s)	60, 451
HpyAV	CCTTC	6 cut(s)	88, 127, 436, 488, 556, 844
HpyCH4III	ACNGT	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 671, 716, 746
HpyF3I	CTNAG	3 cut(s)	26, 54, 386
Hsp92II	CATG	3 cut(s)	254, 293, 572
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	172, 415, 735, 757
LmnI	GCTCC	2 cut(s)	123, 317
Lsp1109I	GCAGC	5 cut(s)	16, 22, 212, 307, 727
LweI	GCATC	7 cut(s)	66, 343, 349, 469, 536, 563, 811
MaeI	CTAG	1 cut(s)	227
MalI	GATC	4 cut(s)	174, 417, 737, 759
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	4 cut(s)	172, 415, 735, 757
MboII	GAAGA	4 cut(s)	590, 593, 596, 806
MhlI	GDGCHC	2 cut(s)	168, 472
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	3 cut(s)	191, 784, 836
MseI	TTAA	3 cut(s)	107, 194, 859
MslI	CAYNNNNRTG	2 cut(s)	465, 573
MspA1I	CMGCKG	2 cut(s)	7, 30
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	4 cut(s)	256, 297, 465, 707
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	4 cut(s)	256, 297, 465, 707
MwoI	GCNNNNNNNGC	8 cut(s)	10, 308, 317, 578, 584, 671, 716, 746
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	4 cut(s)	172, 415, 735, 757
NlaIII	CATG	3 cut(s)	254, 293, 572
NlaIV	GGNNCC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	572
PasI	CCCWGGG	1 cut(s)	296
PctI	GAATGC	1 cut(s)	688
PfeI	GAWTC	1 cut(s)	626
PflFI	GACNNNGTC	1 cut(s)	509
PflMI	CCANNNNNTGG	3 cut(s)	120, 261, 436
PkrI	GCNGC	9 cut(s)	6, 9, 12, 179, 202, 322, 340, 580, 742
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	4 cut(s)	254, 295, 463, 705
PspGI	CCWGG	4 cut(s)	254, 295, 463, 705
PspN4I	GGNNCC	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	629
PsyI	GACNNNGTC	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	465, 573
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	107, 194, 859
SatI	GCNGC	9 cut(s)	5, 8, 11, 178, 201, 321, 339, 579, 741
Sau3AI	GATC	4 cut(s)	172, 415, 735, 757
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	4 cut(s)	256, 297, 465, 707
SduI	GDGCHC	2 cut(s)	168, 472
SfaNI	GCATC	7 cut(s)	66, 343, 349, 469, 536, 563, 811
SfcI	CTRYAG	2 cut(s)	312, 582
SmiMI	CAYNNNNRTG	2 cut(s)	465, 573
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	6 cut(s)	7, 178, 338, 531, 579, 727
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	254, 295, 463, 705
StyI	CCWWGG	1 cut(s)	838
TaaI	ACNGT	1 cut(s)	509
TasI	AATT	1 cut(s)	211
TauI	GCSGC	4 cut(s)	10, 180, 341, 581
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	3 cut(s)	107, 194, 859
Tru9I	TTAA	3 cut(s)	107, 194, 859
TseI	GCWGC	5 cut(s)	4, 10, 200, 320, 740
TspDTI	ATGAA	4 cut(s)	384, 414, 650, 834
Tth111I	GACNNNGTC	1 cut(s)	509
Van91I	CCANNNNNTGG	3 cut(s)	120, 261, 436
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.