FvH4_5g12980

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007196
Physical Location & Seq
Forward (+)
7336737 .. 7340158
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12980.t1

Sequence Viewer

Length: 840 bp
ATGCAGAGACAGCTCTCAAACAAGCTCAGTTGGAAACCCATCTATGGGTTTGCTCAGTTCACTCAAAGGAGAGCGATGCACGATAGGAACAAGAAGGCGATGGAGTTGATAGCCAAAGGGTGGAGCGCTCTGAAGGAAGTTGATAGAGTCATCGACTATTGCGAGCTCAACGATCGCCGACTCATTCCTCTATTAAGGGCAGCAAAGGAAAACTTTGAGTTGGCTCTAGAGACTGACAACTCTAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACCATGTCCCAGGGGCGTGCAAAGCGATAGGAGCTGCCCTGTTAGTTGAAGCCGCAAATATGGGTGATGCAGATGCACAATATGAACTCGCTTGTCGTCTTAGAGTAGAGAATGAGCATGTGCAATCGGATCAGCAAGCTTTCCATTATTTGGAGAAGGCAGTTGACCAGTTGCATCCAGGTGCTCTATACCTTCTGGGTGCTGTGTATCTGACTGGAGACTGTGTCAAGAAAGATGTTGCCTCTGCCTTATGGTGTTTTCATAGGGCATCAGAGAAGGGTCATGCTGGTGCAGCTATAGCATATGGGTCTCTTCTTCTTCAAGGTGTTCAAGTCCCAGAATCTGTGACAAAGTCAACTTCAAAAAGGGGTTCTTTAGCCAGAAAGGCAAGAAAAGATGCAGAAAGCCTTGTAAGAGACCAGGCAGGAATGGCAAGAGAGCGGTTTCAGATCGCTGCAAAAGCAGGATGTGATCTTGGACTGAAATGGTTGGAAAGACTTGACGAGGAAGAGAAGCATCTATTGACCGGAAATGAAATGGTAGAAGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

280

Amino Acids

31.33

Weight (kDa)

8.44

Isoelectric Point (pI)

29.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 157 - 190 5.9e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 120, 261, 436
AccBSI CCGCTC 1 cut(s) 727
AciI CCGC 2 cut(s) 339, 727
AclWI GGATC 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 6 cut(s) 44, 45, 120, 255, 261, 436
AgsI TTSAA 5 cut(s) 283, 335, 608, 617, 648
AjnI CCWGG 4 cut(s) 254, 295, 463, 705
AluBI AGCT 6 cut(s) 13, 25, 166, 320, 425, 581
AluI AGCT 6 cut(s) 13, 25, 166, 320, 425, 581
Alw21I GWGCWC 2 cut(s) 168, 472
Alw26I GTCTC 4 cut(s) 224, 498, 600, 696
AlwI GGATC 1 cut(s) 423
AlwNI CAGNNNCTG 1 cut(s) 629
Aor51HI AGCGCT 1 cut(s) 127
ApeKI GCWGC 4 cut(s) 200, 320, 578, 740
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 362
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 168, 472
BbvI GCAGC 4 cut(s) 212, 307, 590, 727
BccI CCATC 2 cut(s) 47, 94
BciT130I CCWGG 4 cut(s) 256, 297, 465, 707
BcoDI GTCTC 4 cut(s) 224, 498, 600, 696
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 671
BisI GCNGC 5 cut(s) 201, 321, 339, 579, 741
BlsI GCNGC 5 cut(s) 202, 322, 340, 580, 742
Bme1390I CCNGG 4 cut(s) 256, 297, 465, 707
BmrFI CCNGG 4 cut(s) 256, 297, 465, 707
BmsI GCATC 8 cut(s) 66, 343, 349, 469, 563, 673, 811, 823
BpmI CTGGAG 1 cut(s) 522
BsaI GGTCTC 2 cut(s) 600, 696
BsaJI CCNNGG 2 cut(s) 295, 296
BsaWI WCCGGW 1 cut(s) 812
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 45, 120, 255, 261, 436
Bse1I ACTGG 2 cut(s) 454, 505
BseBI CCWGG 4 cut(s) 256, 297, 465, 707
BseDI CCNNGG 2 cut(s) 295, 296
BseGI GGATG 2 cut(s) 460, 758
BseLI CCNNNNNNNGG 6 cut(s) 44, 45, 120, 255, 261, 436
BseMII CTCAG 2 cut(s) 40, 68
BseNI ACTGG 2 cut(s) 454, 505
BseXI GCAGC 4 cut(s) 212, 307, 590, 727
BsgI GTGCAG 1 cut(s) 597
Bsh1285I CGRYCG 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 168, 472
BsiSI CCGG 1 cut(s) 813
BslFI GGGAC 2 cut(s) 278, 605
BslI CCNNNNNNNGG 6 cut(s) 44, 45, 120, 255, 261, 436
BsmAI GTCTC 4 cut(s) 224, 498, 600, 696
BsmFI GGGAC 2 cut(s) 278, 605
Bso31I GGTCTC 2 cut(s) 600, 696
Bsp1286I GDGCHC 2 cut(s) 168, 472
Bsp143I GATC 4 cut(s) 172, 415, 735, 757
BspACI CCGC 2 cut(s) 339, 727
BspCNI CTCAG 2 cut(s) 39, 67
BspPI GGATC 1 cut(s) 423
BspTNI GGTCTC 2 cut(s) 600, 696
BsrBI CCGCTC 1 cut(s) 727
BsrI ACTGG 2 cut(s) 454, 505
BssECI CCNNGG 2 cut(s) 295, 296
BssMI GATC 4 cut(s) 172, 415, 735, 757
Bst2UI CCWGG 4 cut(s) 256, 297, 465, 707
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 2 cut(s) 603, 789
BstC8I GCNNGC 3 cut(s) 164, 304, 423
BstDEI CTNAG 3 cut(s) 26, 54, 386
BstF5I GGATG 2 cut(s) 460, 758
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 4 cut(s) 175, 418, 738, 760
BstMAI GTCTC 4 cut(s) 224, 498, 600, 696
BstMBI GATC 4 cut(s) 172, 415, 735, 757
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 8 cut(s) 10, 308, 317, 578, 584, 671, 716, 746
BstNI CCWGG 4 cut(s) 256, 297, 465, 707
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 4 cut(s) 254, 295, 463, 705
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 4 cut(s) 212, 307, 590, 727
BtgZI GCGATG 2 cut(s) 89, 113
BtsCI GGATG 2 cut(s) 460, 758
Cac8I GCNNGC 3 cut(s) 164, 304, 423
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 1 cut(s) 128
CviAII CATG 4 cut(s) 251, 290, 404, 569
DdeI CTNAG 3 cut(s) 26, 54, 386
DpnI GATC 4 cut(s) 174, 417, 737, 759
DpnII GATC 4 cut(s) 172, 415, 735, 757
Eam1104I CTCTTC 2 cut(s) 603, 789
EarI CTCTTC 2 cut(s) 603, 789
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 2 cut(s) 600, 696
Eco47III AGCGCT 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 4 cut(s) 254, 295, 463, 705
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 4 cut(s) 254, 293, 407, 572
FalI AAGNNNNNCTT 4 cut(s) 197, 229, 643, 675
FaqI GGGAC 2 cut(s) 278, 605
FatI CATG 4 cut(s) 250, 289, 403, 568
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 5 cut(s) 201, 321, 339, 579, 741
FokI GGATG 2 cut(s) 447, 765
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 5 cut(s) 201, 321, 339, 579, 741
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 127
GluI GCNGC 5 cut(s) 201, 321, 339, 579, 741
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 1 cut(s) 813
HhaI GCGC 1 cut(s) 128
Hin1II CATG 4 cut(s) 254, 293, 407, 572
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 2 cut(s) 451, 642
HindII GTYRAC 2 cut(s) 451, 642
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 3 cut(s) 147, 180, 626
HpaII CCGG 1 cut(s) 813
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 3 cut(s) 60, 451, 642
Hpy188I TCNGA 5 cut(s) 132, 415, 498, 559, 735
Hpy188III TCNNGA 3 cut(s) 227, 270, 514
Hpy8I GTNNAC 3 cut(s) 60, 451, 642
HpyAV CCTTC 5 cut(s) 88, 127, 436, 488, 556
HpyCH4III ACNGT 1 cut(s) 509
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 308, 317, 578, 584, 671, 716, 746
HpyF3I CTNAG 3 cut(s) 26, 54, 386
Hsp92II CATG 4 cut(s) 254, 293, 407, 572
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 172, 415, 735, 757
LmnI GCTCC 2 cut(s) 123, 317
Lsp1109I GCAGC 4 cut(s) 212, 307, 590, 727
LweI GCATC 8 cut(s) 66, 343, 349, 469, 563, 673, 811, 823
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 631
MalI GATC 4 cut(s) 174, 417, 737, 759
MbiI CCGCTC 1 cut(s) 727
MboI GATC 4 cut(s) 172, 415, 735, 757
MboII GAAGA 4 cut(s) 590, 593, 596, 806
MhlI GDGCHC 2 cut(s) 168, 472
MlyI GAGTC 2 cut(s) 156, 174
MmeI TCCRAC 2 cut(s) 11, 756
MnlI CCTC 3 cut(s) 198, 538, 784
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 2 cut(s) 465, 573
MspI CCGG 1 cut(s) 813
MspR9I CCNGG 4 cut(s) 256, 297, 465, 707
MvaI CCWGG 4 cut(s) 256, 297, 465, 707
MwoI GCNNNNNNNGC 8 cut(s) 10, 308, 317, 578, 584, 671, 716, 746
NdeI CATATG 1 cut(s) 589
NdeII GATC 4 cut(s) 172, 415, 735, 757
NlaIII CATG 4 cut(s) 254, 293, 407, 572
NmuCI GTSAC 1 cut(s) 631
NspI RCATGY 1 cut(s) 407
PasI CCCWGGG 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 626
PflFI GACNNNGTC 2 cut(s) 509, 637
PflMI CCANNNNNTGG 3 cut(s) 120, 261, 436
PkrI GCNGC 5 cut(s) 202, 322, 340, 580, 742
Ple19I CGATCG 1 cut(s) 175
PleI GAGTC 2 cut(s) 155, 174
PpsI GAGTC 2 cut(s) 155, 174
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 4 cut(s) 254, 295, 463, 705
PspGI CCWGG 4 cut(s) 254, 295, 463, 705
PstNI CAGNNNCTG 1 cut(s) 629
PsyI GACNNNGTC 2 cut(s) 509, 637
PvuI CGATCG 1 cut(s) 175
RseI CAYNNNNRTG 2 cut(s) 465, 573
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 5 cut(s) 201, 321, 339, 579, 741
Sau3AI GATC 4 cut(s) 172, 415, 735, 757
SchI GAGTC 2 cut(s) 156, 174
ScrFI CCNGG 4 cut(s) 256, 297, 465, 707
SduI GDGCHC 2 cut(s) 168, 472
SfaNI GCATC 8 cut(s) 66, 343, 349, 469, 563, 673, 811, 823
SfcI CTRYAG 1 cut(s) 582
SmiMI CAYNNNNRTG 2 cut(s) 465, 573
SsiI CCGC 2 cut(s) 339, 727
SspMI CTAG 1 cut(s) 227
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 4 cut(s) 254, 295, 463, 705
TaaI ACNGT 1 cut(s) 509
TaqI TCGA 1 cut(s) 153
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 4 cut(s) 200, 320, 578, 740
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 3 cut(s) 384, 536, 834
Tth111I GACNNNGTC 2 cut(s) 509, 637
Van91I CCANNNNNTGG 3 cut(s) 120, 261, 436
XbaI TCTAGA 1 cut(s) 226
XceI RCATGY 1 cut(s) 407
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.