RchiOBHm_Chr2g0089021

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007196
Physical Location & Seq
Reverse (-)
3355443 .. 3360727
5285 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46432

Sequence Viewer

Length: 783 bp
ATGGAGTTAATAGCCAAAGGGTGGAGCGCTCTGAAGGAAGTTGATAGAGTCATTGATTACTGCGAGCTCAATGATCGCCGCCTCATTCCTTTATTAAGGGCAGCAAAAGATAATTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACCATGTCCCAGGGGCGTGCAAAGCTATAGGAGCTGCTTTGTTAGTTGAAGCGGCAAATATGGGTGATGCAGATGCACAATATGAACTTGCTTGTCGTCTTAGAGTTGAGTTGGGTTTTTCCCATTGTTTTGTTAATGAATATGTCCAATCGGATCAACAAGCTTTCCATTATCTGGAGAAGGCAGTTGACCAGTTGCATCCTGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGTACAGAAAGATGTTGCATCCGCCTTATGGTGTTTCCATAGGGCATCAGAGAAGGGACATGCTGGTGCCGCTATAGCATATGGGTCTCTTCTTCTTCAAGGTGTTGAAGTCCCAGAATCTGTGATGAACTTGACTTCAAAAAGGGGTTCTTTAGCCAGAAAGGCAAGAAAGAATGCAGAAAGCCTTGTAAGAGACCAGGCAGGAATGGCAAGAGAGCGGTTTCAGATCGCTGCAAAAGCAGGATGTGATCTTGGACTGAAATGGTTGGAAAGACTTGACGAGGAAGAGAAGCATCTATTGACCGAAAATGAAATGGTAGAAAATGCCCTAGGAGGAAAGGTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

260

Amino Acids

28.89

Weight (kDa)

6.01

Isoelectric Point (pI)

26.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 500
AccB7I CCANNNNNTGG 3 cut(s) 21, 162, 361
AccBSI CCGCTC 1 cut(s) 652
AciI CCGC 5 cut(s) 79, 239, 456, 504, 652
AclWI GGATC 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 438
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 5 cut(s) 21, 156, 162, 361, 462
AgsI TTSAA 5 cut(s) 184, 236, 533, 542, 573
AjnI CCWGG 4 cut(s) 155, 196, 388, 630
AluBI AGCT 4 cut(s) 67, 212, 221, 350
AluI AGCT 4 cut(s) 67, 212, 221, 350
Alw21I GWGCWC 2 cut(s) 69, 397
Alw26I GTCTC 4 cut(s) 125, 423, 525, 621
AlwI GGATC 1 cut(s) 348
AlwNI CAGNNNCTG 1 cut(s) 554
Aor51HI AGCGCT 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 101, 221, 665
AspA2I CCTAGG 1 cut(s) 763
AspLEI GCGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 263
AvrII CCTAGG 1 cut(s) 763
BanI GGYRCC 1 cut(s) 500
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 69, 397
BbvI GCAGC 3 cut(s) 113, 208, 652
BciT130I CCWGG 4 cut(s) 157, 198, 390, 632
BcoDI GTCTC 4 cut(s) 125, 423, 525, 621
BfaI CTAG 2 cut(s) 128, 764
BfmI CTRYAG 2 cut(s) 213, 507
BfoI RGCGCY 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 596
BisI GCNGC 6 cut(s) 79, 102, 222, 240, 504, 666
BlnI CCTAGG 1 cut(s) 763
BlsI GCNGC 6 cut(s) 80, 103, 223, 241, 505, 667
Bme1390I CCNGG 4 cut(s) 157, 198, 390, 632
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 4 cut(s) 157, 198, 390, 632
BmsI GCATC 6 cut(s) 244, 250, 394, 461, 488, 736
BpmI CTGGAG 1 cut(s) 383
BsaI GGTCTC 2 cut(s) 525, 621
BsaJI CCNNGG 3 cut(s) 196, 197, 763
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 3 cut(s) 420, 450, 759
Bsc4I CCNNNNNNNGG 5 cut(s) 21, 156, 162, 361, 462
Bse1I ACTGG 1 cut(s) 379
BseBI CCWGG 4 cut(s) 157, 198, 390, 632
BseDI CCNNGG 3 cut(s) 196, 197, 763
BseGI GGATG 3 cut(s) 385, 452, 683
BseLI CCNNNNNNNGG 5 cut(s) 21, 156, 162, 361, 462
BseNI ACTGG 1 cut(s) 379
BseXI GCAGC 3 cut(s) 113, 208, 652
BshNI GGYRCC 1 cut(s) 500
BsiHKAI GWGCWC 2 cut(s) 69, 397
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 3 cut(s) 179, 504, 530
BslI CCNNNNNNNGG 5 cut(s) 21, 156, 162, 361, 462
BsmAI GTCTC 4 cut(s) 125, 423, 525, 621
BsmFI GGGAC 3 cut(s) 179, 504, 530
BsmI GAATGC 1 cut(s) 613
Bso31I GGTCTC 2 cut(s) 525, 621
Bsp1286I GDGCHC 2 cut(s) 69, 397
Bsp1407I TGTACA 1 cut(s) 436
Bsp143I GATC 4 cut(s) 73, 340, 660, 682
BspACI CCGC 5 cut(s) 79, 239, 456, 504, 652
BspLI GGNNCC 1 cut(s) 502
BspPI GGATC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 500
BspTNI GGTCTC 2 cut(s) 525, 621
BsrBI CCGCTC 1 cut(s) 652
BsrGI TGTACA 1 cut(s) 436
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 196, 197, 763
BssMI GATC 4 cut(s) 73, 340, 660, 682
BssT1I CCWWGG 1 cut(s) 763
Bst2UI CCWGG 4 cut(s) 157, 198, 390, 632
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 2 cut(s) 528, 714
BstAUI TGTACA 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 65, 205
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 385, 452, 683
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 4 cut(s) 76, 343, 663, 685
BstMAI GTCTC 4 cut(s) 125, 423, 525, 621
BstMBI GATC 4 cut(s) 73, 340, 660, 682
BstMWI GCNNNNNNNGC 7 cut(s) 209, 218, 503, 509, 596, 641, 671
BstNI CCWGG 4 cut(s) 157, 198, 390, 632
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 4 cut(s) 155, 196, 388, 630
BstSFI CTRYAG 2 cut(s) 213, 507
BstV1I GCAGC 3 cut(s) 113, 208, 652
BtsCI GGATG 3 cut(s) 385, 452, 683
Cac8I GCNNGC 2 cut(s) 65, 205
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 437
CviAII CATG 3 cut(s) 152, 191, 494
CviJI RGCY 8 cut(s) 14, 67, 125, 212, 221, 350, 590, 618
CviKI_1 RGCY 8 cut(s) 14, 67, 125, 212, 221, 350, 590, 618
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 1 cut(s) 287
DpnI GATC 4 cut(s) 75, 342, 662, 684
DpnII GATC 4 cut(s) 73, 340, 660, 682
Eam1104I CTCTTC 2 cut(s) 528, 714
EarI CTCTTC 2 cut(s) 528, 714
EciI GGCGGA 1 cut(s) 445
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 2 cut(s) 525, 621
Eco47III AGCGCT 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 4 cut(s) 155, 196, 388, 630
EcoT14I CCWWGG 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 763
FaeI CATG 3 cut(s) 155, 194, 497
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FaqI GGGAC 3 cut(s) 179, 504, 530
FatI CATG 3 cut(s) 151, 190, 493
FauNDI CATATG 1 cut(s) 514
Fnu4HI GCNGC 6 cut(s) 79, 102, 222, 240, 504, 666
FokI GGATG 3 cut(s) 372, 439, 690
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 6 cut(s) 79, 102, 222, 240, 504, 666
FspBI CTAG 2 cut(s) 128, 764
GlaI GCGC 1 cut(s) 28
GluI GCNGC 6 cut(s) 79, 102, 222, 240, 504, 666
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 30
HapII CCGG 1 cut(s) 426
HhaI GCGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 155, 194, 497
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 2 cut(s) 48, 551
HpaII CCGG 1 cut(s) 426
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 2 cut(s) 376, 437
Hpy188I TCNGA 5 cut(s) 33, 340, 423, 484, 660
Hpy188III TCNNGA 3 cut(s) 128, 171, 362
Hpy8I GTNNAC 2 cut(s) 376, 437
HpyAV CCTTC 4 cut(s) 28, 361, 413, 481
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 8 cut(s) 178, 207, 257, 263, 385, 452, 611, 668
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 218, 503, 509, 596, 641, 671
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 3 cut(s) 155, 194, 497
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 4 cut(s) 73, 340, 660, 682
LmnI GCTCC 2 cut(s) 24, 218
Lsp1109I GCAGC 3 cut(s) 113, 208, 652
LweI GCATC 6 cut(s) 244, 250, 394, 461, 488, 736
MaeI CTAG 2 cut(s) 128, 764
MalI GATC 4 cut(s) 75, 342, 662, 684
MbiI CCGCTC 1 cut(s) 652
MboI GATC 4 cut(s) 73, 340, 660, 682
MboII GAAGA 4 cut(s) 515, 518, 521, 731
MhlI GDGCHC 2 cut(s) 69, 397
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 3 cut(s) 92, 709, 761
MseI TTAA 4 cut(s) 8, 95, 321, 781
MslI CAYNNNNRTG 2 cut(s) 390, 498
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 4 cut(s) 157, 198, 390, 632
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 4 cut(s) 157, 198, 390, 632
MwoI GCNNNNNNNGC 7 cut(s) 209, 218, 503, 509, 596, 641, 671
NdeI CATATG 1 cut(s) 514
NdeII GATC 4 cut(s) 73, 340, 660, 682
NlaIII CATG 3 cut(s) 155, 194, 497
NlaIV GGNNCC 1 cut(s) 502
NspI RCATGY 1 cut(s) 497
PasI CCCWGGG 1 cut(s) 197
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 1 cut(s) 551
PflMI CCANNNNNTGG 3 cut(s) 21, 162, 361
PkrI GCNGC 6 cut(s) 80, 103, 223, 241, 505, 667
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 4 cut(s) 155, 196, 388, 630
PspGI CCWGG 4 cut(s) 155, 196, 388, 630
PspN4I GGNNCC 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 554
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 2 cut(s) 390, 498
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 4 cut(s) 8, 95, 321, 781
SatI GCNGC 6 cut(s) 79, 102, 222, 240, 504, 666
Sau3AI GATC 4 cut(s) 73, 340, 660, 682
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 4 cut(s) 157, 198, 390, 632
SduI GDGCHC 2 cut(s) 69, 397
SetI ASST 8 cut(s) 69, 161, 214, 223, 352, 405, 538, 777
SfaNI GCATC 6 cut(s) 244, 250, 394, 461, 488, 736
SfcI CTRYAG 2 cut(s) 213, 507
SmiMI CAYNNNNRTG 2 cut(s) 390, 498
Sse9I AATT 1 cut(s) 112
SsiI CCGC 5 cut(s) 79, 239, 456, 504, 652
SspMI CTAG 2 cut(s) 128, 764
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 4 cut(s) 155, 196, 388, 630
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 1 cut(s) 434
TaqII GACCGA 1 cut(s) 752
TasI AATT 1 cut(s) 112
TatI WGTACW 1 cut(s) 436
TauI GCSGC 3 cut(s) 81, 242, 506
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 4 cut(s) 8, 95, 321, 781
Tru9I TTAA 4 cut(s) 8, 95, 321, 781
TseI GCWGC 3 cut(s) 101, 221, 665
TspDTI ATGAA 4 cut(s) 285, 339, 575, 759
Van91I CCANNNNNTGG 3 cut(s) 21, 162, 361
XbaI TCTAGA 1 cut(s) 127
XceI RCATGY 1 cut(s) 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmaJI CCTAGG 1 cut(s) 763
XspI CTAG 2 cut(s) 128, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.