Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007196

Physical Location & Seq

Genomic Coordinates Forward (+)

3266197 .. 3270754

Gene Structure 4558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGAATGAGCCAGAGAGCGATGCACGATAGGAACAAGAAGGCGATGGAGTTAATAGCCAAAGGGTGGAGCGCTCTGAAGGAAGTTGATAGAGTCATTGATTACTGCGAGCTCAATGATCGCCGCCTCATTCCTTTATTAAGGGCAGCAAAAGATAATTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACCATGTCCCAGGGGCGTGCAAAGCTATAGGAGCTGCTTTGTTAGTTGAAGCGGCAAATATGGGTGATGCAGATGCACAATATGAACTTGCTTGTCGTCTTAGAGTTGAGAATGAATATGTCCAATCGGATCAACAAGCTTTCCATTATCTGGAGAAGGCAGTTGACCAGTTGCATCCTGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGTCCAGAAAGATGTTGCATCCGCCTTATGGTGTTTCCATAGGGCATCAGAGAAGGGACATGCTGGTGCTGCTATAGCATATGGGTCTCTTCTTCTTCAAGGTGTTGAAGTCCCAGAATCTGTGATGAACTTGACTTCAAAAAGGGGTTCTATAGCCAGAAAGGCAAGAAAGAATGCAGAAAGCCTTGTAAGAGACCAGGCAGGAATGGCAAGAGAGCGGTTTCAGATCGCTGCAAAAGCAGGATGTGATCTTGGACTGAAATGGTTGGAAAGACTTGACGAGGAAGAGAAGCATCTATTGACTGAAAATGAAATGGTAGAAAATGCCCAAGGAGGAAAGAAGGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1

Protein Analysis

268

Amino Acids

29.98

Weight (kDa)

7.11

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25570 AT2G25570 AT2G25570
fragaria_vesca	FvH4_5g12980 FvH4_5g12980
malus_domestica	MD02G1034400.v1.1 MD15G1175100.v1.1
prunus_persica	Prupe.6G277700_v2.0.a1
pyrus_communis	pycom02g02810 pycom15g15660
rosa_chinensis	RchiOBHm_Chr2g0088741 RchiOBHm_Chr2g0088971 RchiOBHm_Chr2g0089021
rosa_laevigata	RLG00000015983
rosa_multiflora	Rmu_co8507067.1_g000001 Rmu_sc0006835.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152340
rosa_rugosa	Rorug01G0486600
rosa_samantha	Rh2AG042100 Rh2BG040600 Rh2CG041500 Rh2CG042100 Rh2DG041100
rosa_wichuraiana	Rw2G003540 Rw5G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	66, 207, 382
AccBSI	CCGCTC	1 cut(s)	673
AciI	CCGC	4 cut(s)	124, 284, 477, 673
AclWI	GGATC	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	98
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	5 cut(s)	66, 201, 207, 382, 483
AgsI	TTSAA	5 cut(s)	229, 281, 554, 563, 594
AjnI	CCWGG	4 cut(s)	200, 241, 409, 651
AluBI	AGCT	4 cut(s)	112, 257, 266, 371
AluI	AGCT	4 cut(s)	112, 257, 266, 371
Alw21I	GWGCWC	2 cut(s)	114, 418
Alw26I	GTCTC	4 cut(s)	170, 444, 546, 642
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	575
Aor51HI	AGCGCT	1 cut(s)	73
ApeKI	GCWGC	4 cut(s)	146, 266, 524, 686
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	114, 418
BbvI	GCAGC	4 cut(s)	158, 253, 511, 673
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	4 cut(s)	202, 243, 411, 653
BcoDI	GTCTC	4 cut(s)	170, 444, 546, 642
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	3 cut(s)	258, 528, 606
BfoI	RGCGCY	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	6 cut(s)	124, 147, 267, 285, 525, 687
BlsI	GCNGC	6 cut(s)	125, 148, 268, 286, 526, 688
Bme1390I	CCNGG	4 cut(s)	202, 243, 411, 653
BmrFI	CCNGG	4 cut(s)	202, 243, 411, 653
BmsI	GCATC	7 cut(s)	12, 289, 295, 415, 482, 509, 757
BpmI	CTGGAG	1 cut(s)	404
BsaI	GGTCTC	2 cut(s)	546, 642
BsaJI	CCNNGG	3 cut(s)	241, 242, 784
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 201, 207, 382, 483
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	4 cut(s)	202, 243, 411, 653
BseDI	CCNNGG	3 cut(s)	241, 242, 784
BseGI	GGATG	3 cut(s)	406, 473, 704
BseLI	CCNNNNNNNGG	5 cut(s)	66, 201, 207, 382, 483
BseNI	ACTGG	1 cut(s)	400
BseXI	GCAGC	4 cut(s)	158, 253, 511, 673
BsiHKAI	GWGCWC	2 cut(s)	114, 418
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	3 cut(s)	224, 525, 551
BslI	CCNNNNNNNGG	5 cut(s)	66, 201, 207, 382, 483
BsmAI	GTCTC	4 cut(s)	170, 444, 546, 642
BsmFI	GGGAC	3 cut(s)	224, 525, 551
BsmI	GAATGC	1 cut(s)	634
Bso31I	GGTCTC	2 cut(s)	546, 642
Bsp1286I	GDGCHC	2 cut(s)	114, 418
Bsp143I	GATC	4 cut(s)	118, 361, 681, 703
BspACI	CCGC	4 cut(s)	124, 284, 477, 673
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	2 cut(s)	546, 642
BsrBI	CCGCTC	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	241, 242, 784
BssMI	GATC	4 cut(s)	118, 361, 681, 703
BssT1I	CCWWGG	1 cut(s)	784
Bst2UI	CCWGG	4 cut(s)	202, 243, 411, 653
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	2 cut(s)	549, 735
BstC8I	GCNNGC	2 cut(s)	110, 250
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	3 cut(s)	406, 473, 704
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	4 cut(s)	121, 364, 684, 706
BstMAI	GTCTC	4 cut(s)	170, 444, 546, 642
BstMBI	GATC	4 cut(s)	118, 361, 681, 703
BstMWI	GCNNNNNNNGC	7 cut(s)	254, 263, 524, 530, 617, 662, 692
BstNI	CCWGG	4 cut(s)	202, 243, 411, 653
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	4 cut(s)	200, 241, 409, 651
BstSFI	CTRYAG	3 cut(s)	258, 528, 606
BstV1I	GCAGC	4 cut(s)	158, 253, 511, 673
BtgZI	GCGATG	2 cut(s)	35, 59
BtsCI	GGATG	3 cut(s)	406, 473, 704
Cac8I	GCNNGC	2 cut(s)	110, 250
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	74
CviAII	CATG	3 cut(s)	197, 236, 515
CviJI	RGCY	9 cut(s)	12, 59, 112, 170, 257, 266, 371, 611, 639
CviKI_1	RGCY	9 cut(s)	12, 59, 112, 170, 257, 266, 371, 611, 639
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	4 cut(s)	120, 363, 683, 705
DpnII	GATC	4 cut(s)	118, 361, 681, 703
Eam1104I	CTCTTC	2 cut(s)	549, 735
EarI	CTCTTC	2 cut(s)	549, 735
EciI	GGCGGA	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	784
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	2 cut(s)	546, 642
Eco47III	AGCGCT	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	4 cut(s)	200, 241, 409, 651
EcoT14I	CCWWGG	1 cut(s)	784
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	784
FaeI	CATG	3 cut(s)	200, 239, 518
FaqI	GGGAC	3 cut(s)	224, 525, 551
FatI	CATG	3 cut(s)	196, 235, 514
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	6 cut(s)	124, 147, 267, 285, 525, 687
FokI	GGATG	3 cut(s)	393, 460, 711
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	6 cut(s)	124, 147, 267, 285, 525, 687
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	6 cut(s)	124, 147, 267, 285, 525, 687
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	75
HapII	CCGG	1 cut(s)	447
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	200, 239, 518
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	2 cut(s)	93, 572
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	5 cut(s)	78, 361, 444, 505, 681
Hpy188III	TCNNGA	4 cut(s)	173, 216, 383, 460
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	6 cut(s)	34, 73, 382, 434, 502, 790
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	9 cut(s)	25, 223, 252, 302, 308, 406, 473, 632, 689
HpyF10VI	GCNNNNNNNGC	7 cut(s)	254, 263, 524, 530, 617, 662, 692
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	200, 239, 518
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	118, 361, 681, 703
LmnI	GCTCC	2 cut(s)	69, 263
Lsp1109I	GCAGC	4 cut(s)	158, 253, 511, 673
LweI	GCATC	7 cut(s)	12, 289, 295, 415, 482, 509, 757
MaeI	CTAG	1 cut(s)	173
MalI	GATC	4 cut(s)	120, 363, 683, 705
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	4 cut(s)	118, 361, 681, 703
MboII	GAAGA	4 cut(s)	536, 539, 542, 752
MhlI	GDGCHC	2 cut(s)	114, 418
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	3 cut(s)	137, 730, 782
MseI	TTAA	3 cut(s)	53, 140, 805
MslI	CAYNNNNRTG	2 cut(s)	411, 519
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	4 cut(s)	202, 243, 411, 653
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	4 cut(s)	202, 243, 411, 653
MwoI	GCNNNNNNNGC	7 cut(s)	254, 263, 524, 530, 617, 662, 692
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	4 cut(s)	118, 361, 681, 703
NlaIII	CATG	3 cut(s)	200, 239, 518
NspI	RCATGY	1 cut(s)	518
PasI	CCCWGGG	1 cut(s)	242
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	572
PflFI	GACNNNGTC	1 cut(s)	455
PflMI	CCANNNNNTGG	3 cut(s)	66, 207, 382
PkrI	GCNGC	6 cut(s)	125, 148, 268, 286, 526, 688
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	4 cut(s)	200, 241, 409, 651
PspGI	CCWGG	4 cut(s)	200, 241, 409, 651
PstNI	CAGNNNCTG	1 cut(s)	575
PsyI	GACNNNGTC	1 cut(s)	455
RseI	CAYNNNNRTG	2 cut(s)	411, 519
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	53, 140, 805
SatI	GCNGC	6 cut(s)	124, 147, 267, 285, 525, 687
Sau3AI	GATC	4 cut(s)	118, 361, 681, 703
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	4 cut(s)	202, 243, 411, 653
SduI	GDGCHC	2 cut(s)	114, 418
SetI	ASST	8 cut(s)	114, 206, 259, 268, 373, 426, 559, 801
SfaNI	GCATC	7 cut(s)	12, 289, 295, 415, 482, 509, 757
SfcI	CTRYAG	3 cut(s)	258, 528, 606
SmiMI	CAYNNNNRTG	2 cut(s)	411, 519
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	4 cut(s)	124, 284, 477, 673
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	4 cut(s)	200, 241, 409, 651
StyI	CCWWGG	1 cut(s)	784
TaaI	ACNGT	1 cut(s)	455
TasI	AATT	1 cut(s)	157
TauI	GCSGC	2 cut(s)	126, 287
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	3 cut(s)	53, 140, 805
Tru9I	TTAA	3 cut(s)	53, 140, 805
TseI	GCWGC	4 cut(s)	146, 266, 524, 686
TspDTI	ATGAA	4 cut(s)	330, 360, 596, 780
Tth111I	GACNNNGTC	1 cut(s)	455
Van91I	CCANNNNNTGG	3 cut(s)	66, 207, 382
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.